Wall clock time and date at job start Tue Mar 31 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47152 * 266.62721 * 3 2 1 5 5 H 1.48498 * 109.47228 * 26.62853 * 3 2 1 6 6 H 1.48495 * 109.47286 * 146.62942 * 3 2 1 7 7 C 1.37878 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99778 * 0.34109 * 7 2 1 9 9 C 1.50694 * 119.99856 * 180.34003 * 7 2 1 10 10 C 1.53007 * 115.55270 * 88.74272 * 9 7 2 11 11 N 1.46907 * 109.46664 * 39.69068 * 10 9 7 12 12 C 1.46897 * 110.99844 * 185.14987 * 11 10 9 13 13 C 1.52999 * 109.47141 * 180.72615 * 12 11 10 14 14 H 1.09003 * 109.46769 * 54.47051 * 13 12 11 15 15 O 1.42895 * 109.47296 * 294.47521 * 13 12 11 16 16 C 1.52999 * 109.46889 * 174.46963 * 13 12 11 17 17 C 1.53005 * 109.47013 * 185.00294 * 16 13 12 18 18 O 1.42900 * 110.45402 * 64.29721 * 17 16 13 19 19 C 1.54504 * 110.51493 * 186.90392 * 17 16 13 20 20 C 1.54480 * 104.06407 * 118.78206 * 19 17 16 21 21 O 1.44429 * 104.80218 * 23.97780 * 20 19 17 22 22 C 1.44428 * 105.27643 * 319.48956 * 21 20 19 23 23 C 1.53002 * 117.52134 * 234.44544 * 9 7 2 24 24 C 1.53003 * 60.00067 * 107.48056 * 23 9 7 25 25 H 0.97003 * 119.99865 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47002 * 279.69571 * 10 9 7 27 27 H 1.08990 * 109.47277 * 159.68943 * 10 9 7 28 28 H 1.00905 * 110.99882 * 61.19766 * 11 10 9 29 29 H 1.09001 * 109.47044 * 60.73270 * 12 11 10 30 30 H 1.08998 * 109.47206 * 300.73154 * 12 11 10 31 31 H 0.96703 * 113.99794 * 299.99639 * 15 13 12 32 32 H 1.08999 * 109.47217 * 65.00833 * 16 13 12 33 33 H 1.08996 * 109.47284 * 304.99748 * 16 13 12 34 34 H 0.96705 * 114.00185 * 181.90695 * 18 17 16 35 35 H 1.08998 * 110.51272 * 237.42749 * 19 17 16 36 36 H 1.09005 * 110.50544 * 0.02562 * 19 17 16 37 37 H 1.08999 * 110.37326 * 142.81298 * 20 19 17 38 38 H 1.09007 * 110.36817 * 265.04110 * 20 19 17 39 39 H 1.08992 * 110.37169 * 281.68082 * 22 21 20 40 40 H 1.08996 * 110.36600 * 159.33764 * 22 21 20 41 41 H 1.09001 * 117.50274 * 214.97313 * 23 9 7 42 42 H 1.09001 * 117.49422 * 359.97438 * 23 9 7 43 43 H 1.08995 * 117.50125 * 252.51236 * 24 23 9 44 44 H 1.09004 * 117.49431 * 107.49282 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5680 2.0052 -1.3977 5 1 1.4128 2.6722 0.6275 6 1 3.5092 1.4618 0.7701 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 -0.0046 9 6 3.5114 -1.1941 0.0083 10 6 4.1643 -1.1673 1.3918 11 7 3.4092 -2.0342 2.3064 12 6 3.9338 -1.9392 3.6752 13 6 3.1357 -2.8674 4.5929 14 1 3.1457 -3.8782 4.1849 15 8 1.7871 -2.4036 4.6832 16 6 3.7675 -2.8736 5.9863 17 6 3.0465 -3.8948 6.8686 18 8 3.2350 -5.2164 6.3590 19 6 3.5482 -3.8002 8.3269 20 6 2.2866 -3.4217 9.1341 21 8 1.1806 -3.8836 8.3282 22 6 1.5411 -3.5622 6.9671 23 6 4.2241 -1.9803 -1.0940 24 6 4.2238 -0.4506 -1.1234 25 1 -0.4850 0.8401 -0.0004 26 1 4.1629 -0.1467 1.7745 27 1 5.1908 -1.5257 1.3161 28 1 3.4122 -2.9902 1.9835 29 1 3.8424 -0.9122 4.0288 30 1 4.9831 -2.2343 3.6834 31 1 1.7021 -1.5085 5.0391 32 1 3.6776 -1.8822 6.4304 33 1 4.8208 -3.1420 5.9065 34 1 2.7752 -5.9017 6.8631 35 1 3.9399 -4.7616 8.6591 36 1 4.3095 -3.0256 8.4193 37 1 2.2888 -3.9261 10.1003 38 1 2.2335 -2.3416 9.2708 39 1 1.3727 -2.5036 6.7699 40 1 0.9707 -4.1747 6.2689 41 1 5.1579 -2.4786 -0.8335 42 1 3.6029 -2.4981 -1.8248 43 1 3.6024 0.0382 -1.8738 44 1 5.1575 0.0576 -0.8824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905248234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:06 Heat of formation + Delta-G solvation = -142.083065 kcal Electronic energy + Delta-G solvation = -23595.358933 eV Core-core repulsion = 20126.500399 eV Total energy + Delta-G solvation = -3468.858534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15877 -39.23033 -38.39512 -36.91059 -35.38097 -34.04942 -33.13462 -31.24312 -29.64277 -27.89334 -26.85006 -24.68965 -23.74682 -23.26631 -22.43853 -21.43699 -20.72450 -18.42521 -18.21251 -17.64368 -17.17181 -16.80294 -16.52355 -16.43872 -15.85805 -15.59595 -15.41075 -15.26313 -15.02697 -14.77325 -14.64242 -14.13762 -13.93629 -13.47605 -13.27659 -13.11254 -12.94905 -12.80692 -12.39964 -12.31936 -12.13243 -12.08466 -11.92371 -11.88190 -11.70478 -11.45883 -11.23832 -10.88655 -10.78726 -10.49045 -10.29801 -10.15425 -8.91399 -8.12145 -6.13325 1.39863 1.41163 1.52963 2.47721 2.95845 3.08012 3.23825 3.25204 3.31979 3.60681 3.67805 3.75609 3.87973 4.10615 4.16951 4.22221 4.27524 4.34107 4.39131 4.45166 4.49146 4.61446 4.67156 4.73317 4.77016 4.80116 4.83903 4.86753 4.90781 4.99064 5.07333 5.09900 5.11135 5.29580 5.39582 5.52127 5.82524 5.83950 6.37592 6.53105 6.68421 6.74772 6.91206 6.98787 7.51896 9.05187 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.003862 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.316725 B = 7249.181451 C = 7736.524847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C 0.016 3.984 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.307 1.307 6 H -0.238 1.238 7 C -0.440 4.440 8 H 0.025 0.975 9 C -0.023 4.023 10 C 0.107 3.893 11 N -0.675 5.675 12 C 0.031 3.969 13 C 0.120 3.880 14 H 0.082 0.918 15 O -0.563 6.563 16 C -0.125 4.125 17 C 0.109 3.891 18 O -0.567 6.567 19 C -0.176 4.176 20 C 0.036 3.964 21 O -0.406 6.406 22 C 0.028 3.972 23 C -0.169 4.169 24 C -0.201 4.201 25 H 0.258 0.742 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.335 0.665 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.378 0.622 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.389 0.611 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.048 -5.007 18.339 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.234 1.234 6 H -0.161 1.161 7 C -0.478 4.478 8 H 0.043 0.957 9 C -0.024 4.024 10 C -0.022 4.022 11 N -0.305 5.305 12 C -0.098 4.098 13 C 0.061 3.939 14 H 0.100 0.900 15 O -0.369 6.369 16 C -0.163 4.163 17 C 0.068 3.932 18 O -0.374 6.374 19 C -0.214 4.214 20 C -0.040 4.040 21 O -0.325 6.325 22 C -0.049 4.049 23 C -0.206 4.206 24 C -0.238 4.238 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.152 0.848 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.226 0.774 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.239 0.761 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.460 -4.812 17.844 22.289 hybrid contribution 0.343 0.564 0.060 0.663 sum 12.802 -4.248 17.903 22.416 Atomic orbital electron populations 1.70075 1.08336 1.27229 1.54472 1.25692 0.95033 1.02439 0.94717 0.85873 0.79550 0.78954 0.78569 1.20140 1.23448 1.16112 1.20127 0.88668 0.92041 1.46992 0.95699 1.19474 0.92887 1.01827 0.88182 1.21482 0.92472 0.96411 0.91873 1.60008 1.56872 1.12544 1.01112 1.22723 0.96672 1.00496 0.89925 1.21746 0.81740 0.97154 0.93278 0.89992 1.86693 1.26473 1.35956 1.87794 1.22228 1.00840 0.98650 0.94560 1.22501 0.93737 0.83834 0.93115 1.86496 1.75696 1.16315 1.58938 1.23666 0.99116 1.04751 0.93888 1.23616 0.84468 1.00264 0.95627 1.89144 1.42612 1.82345 1.18442 1.24287 0.95436 1.02191 0.82961 1.22919 1.01644 0.92870 1.03194 1.22991 1.02067 0.95314 1.03454 0.93301 0.92910 0.95181 0.84762 0.91060 0.93899 0.77378 0.87998 0.89027 0.76149 0.89167 0.87918 0.87645 0.91200 0.90296 0.89971 0.87865 0.90858 0.91168 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.04 13.96 21.45 0.30 -61.74 16 2 C 0.02 0.96 5.47 84.65 0.46 1.43 16 3 Si 0.94 45.72 24.88 68.60 1.71 47.42 16 4 H -0.28 -12.89 7.00 99.48 0.70 -12.19 16 5 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.24 -10.35 5.65 99.48 0.56 -9.79 16 7 C -0.44 -25.17 8.76 25.60 0.22 -24.95 16 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 9 C -0.02 -1.01 1.22 -52.93 -0.06 -1.07 16 10 C 0.11 4.10 5.63 86.30 0.49 4.58 16 11 N -0.68 -25.37 5.75 -513.88 -2.96 -28.32 16 12 C 0.03 0.87 5.31 86.30 0.46 1.32 16 13 C 0.12 3.08 3.04 30.59 0.09 3.17 16 14 H 0.08 2.45 7.72 -2.39 -0.02 2.43 16 15 O -0.56 -16.95 10.35 -148.98 -1.54 -18.49 16 16 C -0.12 -2.23 4.07 30.60 0.12 -2.11 16 17 C 0.11 2.03 1.11 -9.78 -0.01 2.02 16 18 O -0.57 -11.89 12.50 -148.98 -1.86 -13.75 16 19 C -0.18 -2.32 6.52 31.61 0.21 -2.12 16 20 C 0.04 0.54 7.63 72.49 0.55 1.09 16 21 O -0.41 -9.27 11.65 -148.98 -1.74 -11.01 16 22 C 0.03 0.63 5.21 72.49 0.38 1.00 16 23 C -0.17 -6.51 9.88 30.60 0.30 -6.21 16 24 C -0.20 -8.05 7.55 30.60 0.23 -7.82 16 25 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.05 2.10 6.59 -2.39 -0.02 2.08 16 27 H 0.03 0.99 7.94 -2.39 -0.02 0.97 16 28 H 0.33 12.67 8.78 -89.69 -0.79 11.88 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.38 9.24 8.49 -74.06 -0.63 8.61 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.39 6.05 9.04 -74.05 -0.67 5.38 16 35 H 0.09 1.08 8.00 -2.39 -0.02 1.06 16 36 H 0.10 1.01 7.73 -2.38 -0.02 0.99 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.08 1.73 6.15 -2.39 -0.01 1.72 16 40 H 0.08 2.24 7.96 -2.39 -0.02 2.22 16 41 H 0.10 3.26 8.08 -2.39 -0.02 3.24 16 42 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.07 3.07 6.91 -2.39 -0.02 3.05 16 44 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -73.59 345.17 -3.88 -77.47 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -1.23 Total: 38.09 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.44 Total: -29.65 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -2.66 Total: -90.07 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -5.14 Total: -43.26 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.71 Total: 47.42 kcal Total: -73.59 -3.88 -77.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905248234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.615 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds