Wall clock time and date at job start Tue Mar 31 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.41602 * 113.99641 * 2 1 4 4 C 1.34775 * 119.99694 * 180.02562 * 3 2 1 5 5 O 1.21283 * 120.00114 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00123 * 179.97438 * 4 3 2 7 7 N 1.46503 * 109.47299 * 180.02562 * 6 4 3 8 8 C 1.34774 * 119.99752 * 179.97438 * 7 6 4 9 9 O 1.21586 * 120.00244 * 355.01977 * 8 7 6 10 10 N 1.34781 * 119.99705 * 175.02075 * 8 7 6 11 11 C 1.46926 * 120.62929 * 5.22474 * 10 8 7 12 12 C 1.53192 * 108.77568 * 126.37528 * 11 10 8 13 13 C 1.53043 * 109.31416 * 54.63071 * 12 11 10 14 14 C 1.53046 * 109.53653 * 298.63935 * 13 12 11 15 15 H 1.08999 * 109.49459 * 301.41311 * 14 13 12 16 16 C 1.50702 * 109.49497 * 181.34717 * 14 13 12 17 17 H 1.08009 * 119.99920 * 0.02562 * 16 14 13 18 18 C 1.37879 * 120.00047 * 179.97438 * 16 14 13 19 19 N 1.31514 * 119.99731 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00067 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47394 * 90.00280 * 20 18 16 22 22 H 1.48500 * 109.47100 * 210.00512 * 20 18 16 23 23 H 1.48507 * 109.47257 * 330.00055 * 20 18 16 24 24 C 1.46923 * 120.62751 * 184.94903 * 10 8 7 25 25 H 1.09000 * 109.46532 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46772 * 299.99811 * 1 2 3 27 27 H 1.08994 * 109.46988 * 60.00072 * 1 2 3 28 28 H 0.96997 * 120.00489 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.46917 * 299.99986 * 6 4 3 30 30 H 1.08998 * 109.46758 * 60.00089 * 6 4 3 31 31 H 0.97000 * 119.99675 * 359.97438 * 7 6 4 32 32 H 1.09000 * 109.58582 * 246.15866 * 11 10 8 33 33 H 1.08991 * 109.59005 * 6.58092 * 11 10 8 34 34 H 1.08994 * 109.50072 * 174.58638 * 12 11 10 35 35 H 1.09000 * 109.49267 * 294.68407 * 12 11 10 36 36 H 1.08996 * 109.45726 * 58.65661 * 13 12 11 37 37 H 1.08995 * 109.46224 * 178.62150 * 13 12 11 38 38 H 0.96999 * 119.99952 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.58835 * 353.42040 * 24 10 8 40 40 H 1.09007 * 109.58691 * 113.84163 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 3.3453 1.4345 -0.0005 5 8 4.0582 0.4534 -0.0005 6 6 3.9583 2.8112 -0.0011 7 7 5.4187 2.6956 -0.0022 8 6 6.1826 3.8060 -0.0034 9 8 5.6629 4.9013 -0.0950 10 7 7.5226 3.7021 0.0969 11 6 8.1737 2.3850 0.0932 12 6 9.2512 2.3706 -0.9956 13 6 10.2084 3.5444 -0.7760 14 6 9.4354 4.8613 -0.8787 15 1 8.9630 4.9303 -1.8586 16 6 10.3847 6.0173 -0.6953 17 1 11.4347 5.8317 -0.5231 18 6 9.9129 7.3118 -0.7483 19 7 8.6345 7.5376 -0.9585 20 14 11.0896 8.7447 -0.5216 21 1 11.6333 9.1524 -1.8419 22 1 10.3655 9.8878 0.0900 23 1 12.2056 8.3329 0.3675 24 6 8.3605 4.9041 0.2058 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.4348 2.0784 -0.0004 29 1 3.6363 3.3519 -0.8911 30 1 3.6370 3.3523 0.8889 31 1 5.8359 1.8199 -0.0021 32 1 8.6333 2.2019 1.0645 33 1 7.4338 1.6122 -0.1146 34 1 9.8065 1.4341 -0.9456 35 1 8.7805 2.4632 -1.9743 36 1 10.6600 3.4645 0.2127 37 1 10.9903 3.5222 -1.5351 38 1 8.3025 8.4483 -0.9954 39 1 7.7437 5.7928 0.0723 40 1 8.8357 4.9307 1.1865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927218574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:39 Heat of formation + Delta-G solvation = -77.223065 kcal Electronic energy + Delta-G solvation = -22854.212635 eV Core-core repulsion = 19284.626298 eV Total energy + Delta-G solvation = -3569.586337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50125 -40.52869 -38.56453 -38.17439 -35.66699 -35.04048 -33.70858 -33.28087 -31.51347 -29.00987 -27.29579 -26.88587 -25.62970 -23.43880 -22.25465 -21.64404 -20.57813 -19.56446 -19.01256 -18.26304 -17.74533 -17.18342 -17.17295 -16.59384 -16.33959 -15.85994 -15.58089 -15.22654 -15.19727 -15.03308 -14.65520 -14.38688 -14.13326 -14.09895 -13.60390 -13.43382 -13.05173 -12.85414 -12.65383 -12.24773 -12.23655 -12.19704 -11.85813 -11.60998 -11.31164 -11.22525 -10.92902 -10.81700 -10.47524 -10.29868 -10.04298 -9.27256 -8.05838 -6.22958 0.68366 1.35776 1.43779 1.44779 1.55487 1.83033 2.20727 2.45559 3.02307 3.22690 3.25383 3.73735 4.04768 4.16117 4.27216 4.32289 4.36293 4.37219 4.42634 4.62710 4.74484 4.75642 4.82800 4.87990 5.12726 5.25929 5.28148 5.32209 5.37084 5.59897 5.62254 5.65622 5.91618 5.99915 6.14270 6.15750 6.39761 6.89543 7.04529 7.09362 7.46421 7.62803 8.97482 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.003369 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.558949 B = 8309.861691 C = 9045.372752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.177 6.177 3 N -0.581 5.581 4 C 0.529 3.471 5 O -0.562 6.562 6 C 0.134 3.866 7 N -0.734 5.734 8 C 0.701 3.299 9 O -0.628 6.628 10 N -0.625 5.625 11 C 0.109 3.891 12 C -0.126 4.126 13 C -0.104 4.104 14 C 0.037 3.963 15 H -0.014 1.014 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.913 5.913 20 Si 0.958 3.042 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.263 1.263 24 C 0.143 3.857 25 H 0.127 0.873 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.430 0.570 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.410 0.590 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.260 0.740 39 H 0.081 0.919 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 -14.375 3.201 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.181 6.181 3 N -0.286 5.286 4 C 0.316 3.684 5 O -0.439 6.439 6 C 0.006 3.994 7 N -0.397 5.397 8 C 0.402 3.598 9 O -0.509 6.509 10 N -0.361 5.361 11 C -0.013 4.013 12 C -0.164 4.164 13 C -0.142 4.142 14 C 0.017 3.983 15 H 0.004 0.996 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.551 5.551 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 C 0.021 3.979 25 H 0.145 0.855 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.274 0.726 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.250 0.750 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.639 -14.354 3.148 20.742 hybrid contribution -0.032 1.062 -0.124 1.069 sum -14.670 -13.292 3.024 20.026 Atomic orbital electron populations 1.23623 0.77699 1.06182 1.02890 1.90589 1.23199 1.06852 1.97446 1.47245 1.05062 0.99795 1.76457 1.20692 0.80767 0.91358 0.75571 1.90703 1.61285 1.41083 1.50877 1.20793 0.80160 0.91786 1.06683 1.44821 1.05444 1.08274 1.81129 1.15932 0.82012 0.83839 0.77994 1.90897 1.73163 1.27366 1.59507 1.47661 1.03771 1.09068 1.75590 1.21840 0.96013 0.83180 1.00311 1.21905 0.96978 0.99515 0.98022 1.21509 0.97564 0.94204 1.00936 1.18855 0.92960 0.93389 0.93081 0.99618 1.21498 0.94792 0.91394 1.49698 0.92007 1.25890 0.96535 1.01826 0.94722 1.70093 1.14457 1.20949 1.49632 0.85561 0.79038 0.78735 0.78349 1.20271 1.21249 1.18717 1.21541 0.92591 0.86164 0.97636 0.85474 0.90896 0.90992 0.72588 0.86930 0.86390 0.74959 0.89998 0.89098 0.87980 0.93323 0.92263 0.92963 0.93110 0.90097 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 11.30 113.37 1.28 1.22 16 2 O -0.18 -3.31 11.47 -21.39 -0.25 -3.55 16 3 N -0.58 -9.49 6.39 -173.53 -1.11 -10.60 16 4 C 0.53 12.18 8.04 87.66 0.71 12.88 16 5 O -0.56 -17.66 16.07 14.36 0.23 -17.43 16 6 C 0.13 3.09 6.16 85.63 0.53 3.62 16 7 N -0.73 -22.67 5.44 -482.29 -2.62 -25.29 16 8 C 0.70 29.01 8.30 179.05 1.49 30.49 16 9 O -0.63 -31.52 15.77 -3.99 -0.06 -31.58 16 10 N -0.63 -25.88 2.98 -837.76 -2.50 -28.38 16 11 C 0.11 3.37 6.39 86.36 0.55 3.92 16 12 C -0.13 -3.97 6.08 30.67 0.19 -3.79 16 13 C -0.10 -4.14 5.11 30.62 0.16 -3.98 16 14 C 0.04 1.87 2.24 -11.60 -0.03 1.85 16 15 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 16 C -0.54 -29.69 8.56 25.60 0.22 -29.47 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.01 0.55 5.31 84.66 0.45 1.00 16 19 N -0.91 -55.52 11.39 21.45 0.24 -55.28 16 20 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 C 0.14 7.24 5.39 86.22 0.46 7.70 16 25 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.43 3.35 8.54 -92.71 -0.79 2.56 16 29 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.41 11.80 4.93 -92.71 -0.46 11.34 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.09 2.35 5.65 -2.39 -0.01 2.34 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.08 4.85 5.11 -2.39 -0.01 4.84 16 40 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -81.17 331.21 1.79 -79.39 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.18 Total: 20.89 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 6.00 Total: 25.45 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.98 Total: -119.54 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -0.08 Total: -52.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -81.17 1.79 -79.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927218574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.162 kcal (2) G-P(sol) polarization free energy of solvation -81.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds