Wall clock time and date at job start Tue Mar 31 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99652 * 2 1 4 4 C 1.34769 * 120.00094 * 180.02562 * 2 1 3 5 5 O 1.21588 * 120.00531 * 0.02562 * 4 2 1 6 6 N 1.34780 * 119.99929 * 180.02562 * 4 2 1 7 7 C 1.46499 * 119.99945 * 179.97438 * 6 4 2 8 8 H 1.08993 * 109.53472 * 324.89871 * 7 6 4 9 9 C 1.53121 * 109.50625 * 85.00039 * 7 6 4 10 10 C 1.53114 * 109.16182 * 177.59356 * 9 7 6 11 11 C 1.53030 * 109.27881 * 302.34317 * 10 9 7 12 12 N 1.46849 * 109.52587 * 59.17766 * 11 10 9 13 13 C 1.46899 * 110.99934 * 174.15743 * 12 11 10 14 14 C 1.52994 * 109.47332 * 293.87757 * 13 12 11 15 15 H 1.09002 * 109.47214 * 60.67095 * 14 13 12 16 16 O 1.42893 * 109.47773 * 300.66228 * 14 13 12 17 17 C 1.50703 * 109.46910 * 180.66003 * 14 13 12 18 18 H 1.08005 * 119.99959 * 0.02562 * 17 14 13 19 19 C 1.37880 * 119.99907 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00202 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99738 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47192 * 90.00263 * 21 19 17 23 23 H 1.48506 * 109.46908 * 209.99956 * 21 19 17 24 24 H 1.48497 * 109.47218 * 329.99999 * 21 19 17 25 25 C 1.46845 * 111.19891 * 298.26127 * 12 11 10 26 26 H 1.09002 * 109.46803 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47495 * 299.99632 * 1 2 3 28 28 H 1.09000 * 109.47402 * 59.99977 * 1 2 3 29 29 H 1.08992 * 109.47609 * 270.00048 * 3 2 1 30 30 H 1.09000 * 109.46816 * 30.00354 * 3 2 1 31 31 H 1.08998 * 109.46874 * 149.99975 * 3 2 1 32 32 H 0.97000 * 119.99529 * 359.97438 * 6 4 2 33 33 H 1.08998 * 109.52360 * 57.68368 * 9 7 6 34 34 H 1.09005 * 109.52153 * 297.49891 * 9 7 6 35 35 H 1.08999 * 109.50526 * 182.39881 * 10 9 7 36 36 H 1.09005 * 109.50500 * 62.28416 * 10 9 7 37 37 H 1.08999 * 109.46672 * 299.16190 * 11 10 9 38 38 H 1.09002 * 109.45260 * 179.19075 * 11 10 9 39 39 H 1.09006 * 109.46807 * 173.87743 * 13 12 11 40 40 H 1.09005 * 109.46936 * 53.88652 * 13 12 11 41 41 H 0.96695 * 114.00096 * 300.00719 * 16 14 13 42 42 H 0.97001 * 120.00033 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.46168 * 181.75716 * 25 12 11 44 44 H 1.08998 * 109.46088 * 301.72641 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5311 -2.2202 -0.0015 6 7 3.4867 -1.1671 0.0000 7 6 4.2192 -2.4358 0.0000 8 1 3.6734 -3.1717 0.5903 9 6 4.3665 -2.9411 -1.4379 10 6 5.1845 -4.2354 -1.4344 11 6 6.5458 -3.9711 -0.7872 12 7 6.3510 -3.4903 0.5867 13 6 7.6364 -3.3579 1.2853 14 6 8.2610 -4.7421 1.4710 15 1 8.4341 -5.1964 0.4954 16 8 7.3747 -5.5668 2.2300 17 6 9.5719 -4.6077 2.2020 18 1 9.9241 -3.6325 2.5044 19 6 10.3217 -5.7297 2.4849 20 7 9.8931 -6.9171 2.1163 21 14 11.9464 -5.5631 3.3917 22 1 11.7087 -5.6573 4.8545 23 1 12.8635 -6.6516 2.9682 24 1 12.5584 -4.2481 3.0734 25 6 5.6085 -2.2235 0.6057 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.3791 1.5835 -1.0276 30 1 1.6083 2.0283 0.5139 31 1 3.1499 1.1385 0.5138 32 1 3.9716 -0.3270 0.0004 33 1 4.8780 -2.1885 -2.0379 34 1 3.3798 -3.1349 -1.8587 35 1 5.3291 -4.5774 -2.4592 36 1 4.6539 -4.9998 -0.8666 37 1 7.0816 -3.2167 -1.3633 38 1 7.1251 -4.8942 -0.7702 39 1 7.4742 -2.8986 2.2605 40 1 8.3073 -2.7324 0.6963 41 1 7.1757 -5.2230 3.1116 42 1 10.4208 -7.7064 2.3150 43 1 5.5073 -1.8773 1.6343 44 1 6.1486 -1.4773 0.0229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930666692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:41 Heat of formation + Delta-G solvation = -68.541039 kcal Electronic energy + Delta-G solvation = -23412.101340 eV Core-core repulsion = 19978.724579 eV Total energy + Delta-G solvation = -3433.376762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.41631 -38.65820 -36.01075 -35.49493 -34.32791 -32.32488 -32.02127 -29.80472 -28.26930 -27.91186 -25.92655 -25.16088 -22.86509 -22.63309 -20.41171 -20.15568 -19.48034 -18.13541 -17.07260 -16.55628 -16.03781 -15.31923 -14.80717 -14.66628 -14.56388 -14.33260 -14.08585 -14.01910 -13.61819 -13.35409 -13.00858 -12.90020 -12.88824 -12.81695 -12.34514 -12.29744 -12.11206 -11.19365 -11.12597 -10.95549 -10.89758 -10.78072 -10.62419 -10.42584 -10.27227 -10.16423 -9.97741 -9.16743 -8.94975 -8.76433 -8.55274 -8.07708 -7.65465 -5.98857 -4.17422 2.47996 3.10207 3.28090 3.35185 3.37116 3.70776 4.34736 4.52971 4.69007 4.90445 4.95970 5.01657 5.07801 5.23630 5.26491 5.29061 5.30814 5.42147 5.48719 5.60042 5.75828 5.81373 5.87906 6.00546 6.07513 6.15076 6.17772 6.23136 6.35246 6.46305 6.52147 6.52835 6.64647 6.76788 6.82065 7.54741 7.59702 7.79299 7.79582 7.89633 8.21727 8.49128 8.86432 9.48844 9.65480 11.05174 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.003180 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.645604 B = 8803.885245 C = 9111.175190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.642 5.642 3 C 0.081 3.919 4 C 0.706 3.294 5 O -0.586 6.586 6 N -0.739 5.739 7 C 0.165 3.835 8 H 0.098 0.902 9 C -0.126 4.126 10 C -0.113 4.113 11 C 0.054 3.946 12 N -0.521 5.521 13 C 0.033 3.967 14 C 0.237 3.763 15 H 0.055 0.945 16 O -0.553 6.553 17 C -0.575 4.575 18 H 0.054 0.946 19 C 0.080 3.920 20 N -0.857 5.857 21 Si 0.889 3.111 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.052 3.948 26 H 0.088 0.912 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.392 0.608 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.343 0.657 42 H 0.260 0.740 43 H 0.074 0.926 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 16.487 -6.107 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.381 5.381 3 C -0.063 4.063 4 C 0.407 3.593 5 O -0.463 6.463 6 N -0.395 5.395 7 C 0.060 3.940 8 H 0.116 0.884 9 C -0.165 4.165 10 C -0.151 4.151 11 C -0.074 4.074 12 N -0.245 5.245 13 C -0.095 4.095 14 C 0.179 3.821 15 H 0.073 0.927 16 O -0.354 6.354 17 C -0.613 4.613 18 H 0.072 0.928 19 C -0.126 4.126 20 N -0.493 5.493 21 Si 0.716 3.284 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.078 4.078 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.228 0.772 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.186 0.814 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.634 14.787 -6.420 21.772 hybrid contribution 1.777 1.748 0.542 2.551 sum -12.857 16.535 -5.878 21.755 Atomic orbital electron populations 1.21538 0.77965 1.04314 1.00660 1.46899 1.07087 1.04878 1.79218 1.21686 0.97085 0.85847 1.01690 1.15857 0.81974 0.83787 0.77700 1.90924 1.67652 1.29851 1.57907 1.45343 1.04534 1.09925 1.79659 1.20872 0.91872 0.84396 0.96872 0.88352 1.21959 1.00489 0.97753 0.96331 1.21539 0.95940 0.97276 1.00363 1.22146 0.96513 1.00745 0.87982 1.61831 1.21120 1.25909 1.15688 1.23094 0.87306 1.02210 0.96853 1.19319 0.86235 0.83615 0.92910 0.92744 1.86563 1.68032 1.51984 1.28858 1.21651 1.06024 0.93308 1.40367 0.92797 1.25021 0.97342 0.95302 0.94974 1.70079 1.37261 0.97778 1.44174 0.86684 0.83775 0.77747 0.80202 1.20525 1.21133 1.19941 1.22229 0.93039 0.92129 1.00372 0.89306 0.92590 0.92694 0.92705 0.90795 0.91469 0.77249 0.92654 0.91638 0.91605 0.90596 0.95802 0.89332 0.91827 0.95558 0.81443 0.92986 0.90761 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 10.69 59.85 0.64 1.45 16 2 N -0.64 -6.29 3.27 -195.34 -0.64 -6.93 16 3 C 0.08 0.47 10.25 59.85 0.61 1.09 16 4 C 0.71 9.45 8.25 -86.92 -0.72 8.73 16 5 O -0.59 -10.27 15.34 5.29 0.08 -10.19 16 6 N -0.74 -8.65 4.95 -58.60 -0.29 -8.94 16 7 C 0.16 2.31 2.61 -67.85 -0.18 2.13 16 8 H 0.10 1.67 7.58 -51.93 -0.39 1.28 16 9 C -0.13 -1.72 5.58 -26.61 -0.15 -1.87 16 10 C -0.11 -1.66 6.09 -26.66 -0.16 -1.82 16 11 C 0.05 0.92 5.29 -3.84 -0.02 0.90 16 12 N -0.52 -9.31 4.51 -234.67 -1.06 -10.37 16 13 C 0.03 0.66 4.57 -3.83 -0.02 0.64 16 14 C 0.24 5.95 2.69 -27.88 -0.08 5.87 16 15 H 0.05 1.50 6.47 -51.93 -0.34 1.16 16 16 O -0.55 -14.44 12.58 -35.23 -0.44 -14.89 16 17 C -0.58 -15.64 8.76 -34.44 -0.30 -15.94 16 18 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 19 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 20 N -0.86 -25.36 12.84 55.43 0.71 -24.64 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.05 0.74 4.93 -3.83 -0.02 0.73 16 26 H 0.09 0.92 6.90 -51.93 -0.36 0.56 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.07 0.35 6.36 -51.93 -0.33 0.02 16 32 H 0.39 3.49 6.33 -40.82 -0.26 3.23 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 1.72 6.24 -51.93 -0.32 1.40 16 39 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 40 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 41 H 0.34 8.09 9.04 45.56 0.41 8.51 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -33.38 349.89 -8.47 -41.86 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.61 Total: 8.76 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.48 Total: 4.03 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -1.28 Total: -50.88 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.36 Total: -25.08 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.38 -8.47 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930666692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.684 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds