Wall clock time and date at job start Tue Mar 31 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 120.00125 * 2 1 4 4 O 1.21287 * 119.99617 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00207 * 180.02562 * 3 2 1 6 6 C 1.50702 * 109.46765 * 180.02562 * 5 3 2 7 7 O 1.21275 * 120.00210 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99759 * 180.02562 * 6 5 3 9 9 C 1.46496 * 120.00209 * 179.72258 * 8 6 5 10 10 H 1.09003 * 109.45862 * 35.27456 * 9 8 6 11 11 C 1.53041 * 109.46074 * 275.30252 * 9 8 6 12 12 C 1.53197 * 109.30944 * 178.59659 * 11 9 8 13 13 N 1.46927 * 108.76688 * 54.66021 * 12 11 9 14 14 C 1.36933 * 120.62916 * 126.35573 * 13 12 11 15 15 H 1.07998 * 120.00828 * 331.85573 * 14 13 12 16 16 C 1.38817 * 119.99554 * 151.86415 * 14 13 12 17 17 N 1.31619 * 120.00048 * 343.06625 * 16 14 13 18 18 Si 1.86799 * 120.00008 * 163.07446 * 16 14 13 19 19 H 1.48498 * 109.47201 * 59.99430 * 18 16 14 20 20 H 1.48506 * 109.47050 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46961 * 299.99302 * 18 16 14 22 22 C 1.46924 * 118.73535 * 306.38434 * 13 12 11 23 23 C 1.53045 * 109.46171 * 155.24838 * 9 8 6 24 24 H 1.09000 * 109.49529 * 61.43418 * 23 9 8 25 25 O 1.42904 * 109.49484 * 301.36868 * 23 9 8 26 26 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47020 * 299.99453 * 1 2 3 28 28 H 1.08999 * 109.47119 * 59.99601 * 1 2 3 29 29 H 0.97000 * 120.00177 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47119 * 60.00400 * 5 3 2 31 31 H 1.09001 * 109.47421 * 300.00093 * 5 3 2 32 32 H 0.97011 * 120.00191 * 0.02562 * 8 6 5 33 33 H 1.08988 * 109.49850 * 298.56488 * 11 9 8 34 34 H 1.09005 * 109.49482 * 58.66617 * 11 9 8 35 35 H 1.08997 * 109.60226 * 294.86408 * 12 11 9 36 36 H 1.09001 * 109.69930 * 174.50535 * 12 11 9 37 37 H 0.96997 * 120.00302 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.58225 * 293.81686 * 22 13 12 39 39 H 1.08998 * 109.70489 * 173.46631 * 22 13 12 40 40 H 0.96703 * 113.99695 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1481 2.5881 0.0002 7 8 3.3600 3.5099 0.0016 8 7 5.4732 2.8345 -0.0007 9 6 5.9615 4.2156 -0.0061 10 1 5.2914 4.8400 0.5849 11 6 6.0059 4.7351 -1.4450 12 6 6.4835 6.1907 -1.4435 13 7 7.7686 6.2658 -0.7353 14 6 8.8602 6.8405 -1.3297 15 1 8.9568 6.8315 -2.4053 16 6 9.8428 7.4346 -0.5496 17 7 9.5889 7.7467 0.7036 18 14 11.5253 7.7913 -1.2784 19 1 11.3790 8.7123 -2.4341 20 1 12.3872 8.4239 -0.2478 21 1 12.1471 6.5216 -1.7329 22 6 7.8603 5.7120 0.6225 23 6 7.3669 4.2619 0.5980 24 1 8.0430 3.6577 -0.0070 25 8 7.3304 3.7473 1.9307 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.9500 -0.8400 -0.0004 30 1 4.0089 0.6537 -0.8909 31 1 4.0096 0.6532 0.8891 32 1 6.1037 2.0971 -0.0022 33 1 6.6949 4.1265 -2.0304 34 1 5.0090 4.6800 -1.8825 35 1 5.7492 6.8160 -0.9356 36 1 6.6109 6.5367 -2.4693 37 1 10.2753 8.1622 1.2486 38 1 7.2383 6.2983 1.2990 39 1 8.8958 5.7400 0.9616 40 1 8.1890 3.7463 2.3755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099791421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:02 Heat of formation + Delta-G solvation = -96.039966 kcal Electronic energy + Delta-G solvation = -23121.778387 eV Core-core repulsion = 19551.376088 eV Total energy + Delta-G solvation = -3570.402299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25815 -39.01319 -37.60887 -35.24848 -34.71494 -34.14052 -32.27215 -31.02706 -29.25356 -28.77063 -26.61459 -24.97569 -22.52617 -21.89317 -20.90166 -20.06572 -19.40058 -17.45603 -17.32464 -16.66115 -16.52232 -15.99427 -15.62125 -15.49641 -14.78736 -14.53051 -13.90219 -13.71287 -13.61040 -13.41783 -13.24406 -13.04496 -12.60381 -12.49774 -12.19607 -12.09570 -11.76975 -11.64842 -11.18742 -10.80695 -10.77480 -10.37203 -10.20599 -10.13243 -9.99195 -9.64743 -9.42443 -9.29739 -9.16480 -8.66531 -8.49861 -6.76001 -5.85864 -3.29737 2.56329 2.83232 2.95593 3.34105 3.40262 3.41015 3.59422 4.41918 4.46490 4.61330 4.85500 4.97749 5.05374 5.19240 5.28100 5.31516 5.43237 5.50642 5.56668 5.64261 5.94404 6.04699 6.12092 6.18820 6.27889 6.49562 6.52647 6.74094 6.92040 6.94958 7.13968 7.26070 7.47428 7.72566 7.81513 8.11033 8.15202 8.37577 8.58050 9.12607 9.75371 10.32184 11.22596 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.044002 B = 0.003336 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.181298 B = 8392.337133 C = 8628.952053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.744 5.744 3 C 0.509 3.491 4 O -0.488 6.488 5 C -0.165 4.165 6 C 0.509 3.491 7 O -0.500 6.500 8 N -0.719 5.719 9 C 0.164 3.836 10 H 0.087 0.913 11 C -0.139 4.139 12 C 0.144 3.856 13 N -0.589 5.589 14 C -0.256 4.256 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.148 3.852 23 C 0.073 3.927 24 H 0.051 0.949 25 O -0.573 6.573 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.399 0.601 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.395 0.605 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.060 0.940 37 H 0.256 0.744 38 H 0.029 0.971 39 H 0.093 0.907 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -19.291 -0.641 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.399 5.399 3 C 0.293 3.707 4 O -0.359 6.359 5 C -0.209 4.209 6 C 0.292 3.708 7 O -0.373 6.373 8 N -0.370 5.370 9 C 0.060 3.940 10 H 0.105 0.895 11 C -0.179 4.179 12 C 0.018 3.982 13 N -0.313 5.313 14 C -0.386 4.386 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.021 3.979 23 C 0.012 3.988 24 H 0.069 0.931 25 O -0.377 6.377 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.232 0.768 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.111 0.889 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -10.813 -17.752 -0.655 20.796 hybrid contribution 2.107 -0.663 -0.165 2.215 sum -8.705 -18.415 -0.819 20.385 Atomic orbital electron populations 1.21487 0.79658 1.01899 1.02405 1.45813 1.07671 1.08498 1.77893 1.20118 0.89374 0.83919 0.77277 1.90885 1.69398 1.30406 1.45244 1.21600 0.94485 0.98417 1.06354 1.19845 0.82845 0.90231 0.77894 1.90854 1.54472 1.45239 1.46751 1.46064 1.06216 1.09292 1.75466 1.20950 0.94466 0.81790 0.96783 0.89493 1.22408 1.00815 0.99664 0.95049 1.20946 0.88317 0.92029 0.96941 1.43997 1.06173 1.66995 1.14147 1.19167 0.97447 1.30355 0.91597 0.91426 1.25093 0.99970 0.97929 0.96633 1.70018 1.32986 1.43866 1.07758 0.86340 0.84001 0.78065 0.78184 1.20768 1.21592 1.21009 1.21403 1.02039 0.87334 0.87092 1.22976 0.94985 0.98602 0.82250 0.93090 1.86419 1.36258 1.86402 1.28668 0.90836 0.92306 0.92318 0.76789 0.86359 0.86277 0.77228 0.92089 0.91791 0.95807 0.92136 0.93428 0.95261 0.88893 0.77827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -5.90 5.71 -67.08 -0.38 -6.28 16 3 C 0.51 6.32 7.82 -10.99 -0.09 6.24 16 4 O -0.49 -8.99 14.18 -18.97 -0.27 -9.25 16 5 C -0.17 -1.61 6.19 -29.04 -0.18 -1.79 16 6 C 0.51 7.92 7.78 -10.98 -0.09 7.84 16 7 O -0.50 -10.53 13.84 -18.96 -0.26 -10.80 16 8 N -0.72 -10.57 4.92 -53.76 -0.26 -10.83 16 9 C 0.16 3.02 2.12 -67.89 -0.14 2.87 16 10 H 0.09 1.89 7.58 -51.93 -0.39 1.49 16 11 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 12 C 0.14 3.12 6.52 -3.71 -0.02 3.09 16 13 N -0.59 -14.57 2.99 -172.32 -0.52 -15.08 16 14 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 18 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.15 3.45 4.93 -3.71 -0.02 3.43 16 23 C 0.07 1.35 3.14 -26.61 -0.08 1.27 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 O -0.57 -9.69 13.16 -35.23 -0.46 -10.16 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.40 1.63 8.83 -40.82 -0.36 1.27 16 30 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 4.56 8.60 -40.82 -0.35 4.20 16 33 H 0.06 1.08 8.14 -51.94 -0.42 0.65 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 40 H 0.38 5.05 9.09 45.56 0.41 5.46 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -36.99 331.97 -7.12 -44.11 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.19 Total: 7.73 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -0.36 Total: 14.49 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.54 Total: -57.22 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.99 Total: -30.21 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.99 -7.12 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099791421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.932 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds