Wall clock time and date at job start Tue Mar 31 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00112 * 2 1 4 4 C 1.46898 * 110.99626 * 123.94923 * 2 1 3 5 5 C 1.53003 * 109.47331 * 66.04857 * 4 2 1 6 6 C 1.50700 * 109.47608 * 179.97438 * 5 4 2 7 7 O 1.21288 * 119.99644 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00118 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99778 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.45013 * 324.96434 * 9 8 6 11 11 C 1.53042 * 109.46084 * 84.93322 * 9 8 6 12 12 C 1.52761 * 109.38545 * 181.25723 * 11 9 8 13 13 N 1.46926 * 109.00676 * 305.59232 * 12 11 9 14 14 C 1.36935 * 120.62679 * 233.57816 * 13 12 11 15 15 H 1.08007 * 120.00125 * 151.86114 * 14 13 12 16 16 C 1.38814 * 120.00295 * 331.86126 * 14 13 12 17 17 N 1.31616 * 119.99756 * 343.00020 * 16 14 13 18 18 Si 1.86800 * 120.00150 * 162.72161 * 16 14 13 19 19 H 1.48499 * 109.47120 * 266.51728 * 18 16 14 20 20 H 1.48500 * 109.47186 * 26.51827 * 18 16 14 21 21 H 1.48496 * 109.47113 * 146.51645 * 18 16 14 22 22 C 1.46924 * 118.74247 * 53.30926 * 13 12 11 23 23 C 1.53041 * 109.46024 * 205.00084 * 9 8 6 24 24 H 1.09000 * 109.49696 * 298.57018 * 23 9 8 25 25 O 1.42901 * 109.49508 * 58.66520 * 23 9 8 26 26 H 1.09004 * 109.47037 * 296.04995 * 1 2 3 27 27 H 1.09002 * 109.46633 * 56.04491 * 1 2 3 28 28 H 1.09001 * 109.47019 * 176.04996 * 1 2 3 29 29 H 1.09003 * 109.47130 * 183.95276 * 3 2 1 30 30 H 1.09006 * 109.47045 * 303.94953 * 3 2 1 31 31 H 1.08997 * 109.47497 * 63.95356 * 3 2 1 32 32 H 1.08996 * 109.47810 * 306.04324 * 4 2 1 33 33 H 1.09005 * 109.47248 * 186.04305 * 4 2 1 34 34 H 1.09002 * 109.47048 * 59.99752 * 5 4 2 35 35 H 1.09000 * 109.46874 * 300.00173 * 5 4 2 36 36 H 0.96994 * 120.00237 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.49545 * 301.33866 * 11 9 8 38 38 H 1.09003 * 109.49458 * 61.43456 * 11 9 8 39 39 H 1.08996 * 109.51199 * 185.70744 * 12 11 9 40 40 H 1.09004 * 109.43117 * 65.42487 * 12 11 9 41 41 H 0.97007 * 119.99844 * 179.72804 * 17 16 14 42 42 H 1.08999 * 109.58753 * 66.42971 * 22 13 12 43 43 H 1.09001 * 109.58978 * 186.71321 * 22 13 12 44 44 H 0.96704 * 113.99593 * 179.84371 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 6 2.1719 -3.0285 2.1373 7 8 2.7880 -2.4631 3.0158 8 7 1.9706 -4.3594 2.2045 9 6 2.4956 -5.1232 3.3390 10 1 3.4482 -4.6971 3.6538 11 6 1.5005 -5.0604 4.5001 12 6 2.0637 -5.8311 5.6928 13 7 2.4055 -7.1941 5.2635 14 6 1.9105 -8.2812 5.9330 15 1 1.7634 -9.2156 5.4116 16 6 1.5976 -8.1824 7.2818 17 7 2.0727 -7.1842 7.9961 18 14 0.4959 -9.4617 8.0812 19 1 -0.9122 -8.9910 8.0506 20 1 0.6057 -10.7430 7.3388 21 1 0.9184 -9.6680 9.4898 22 6 3.2838 -7.3685 4.0986 23 6 2.7025 -6.5806 2.9205 24 1 1.7460 -7.0147 2.6290 25 8 3.6082 -6.6358 1.8165 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3432 -0.0708 30 1 1.5899 1.9163 -0.8525 31 1 1.7045 1.8724 0.9232 32 1 1.5611 -0.3871 2.0628 33 1 3.0797 -0.6611 1.1757 34 1 2.0658 -2.6214 0.0454 35 1 0.5471 -2.3474 0.9324 36 1 1.4782 -4.8115 1.5017 37 1 1.3358 -4.0205 4.7822 38 1 0.5554 -5.5089 4.1938 39 1 1.3157 -5.8742 6.4844 40 1 2.9585 -5.3283 6.0596 41 1 1.8509 -7.1130 8.9378 42 1 4.2802 -6.9936 4.3328 43 1 3.3427 -8.4258 3.8404 44 1 3.7877 -7.5316 1.4996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099987238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:05 Heat of formation + Delta-G solvation = -89.363788 kcal Electronic energy + Delta-G solvation = -23342.256969 eV Core-core repulsion = 19907.977266 eV Total energy + Delta-G solvation = -3434.279704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14938 -39.57375 -38.23369 -36.98177 -35.73461 -33.84433 -32.59466 -31.45680 -30.13762 -28.46888 -27.28211 -25.86133 -24.05378 -23.57057 -22.21221 -21.40937 -20.87440 -18.97018 -18.13036 -18.01249 -17.37574 -16.89550 -16.74395 -16.08000 -15.80296 -15.72898 -15.62307 -15.33633 -14.98863 -14.59322 -14.39535 -14.11039 -13.83549 -13.53984 -13.29040 -13.27866 -12.98649 -12.76672 -12.73398 -12.60726 -12.45862 -12.33409 -12.12218 -12.04292 -11.90554 -11.89473 -11.38937 -11.09399 -10.81554 -10.57632 -10.00960 -9.37997 -8.77992 -7.91171 -5.39399 1.48232 1.49454 1.58887 1.68061 2.13660 2.48523 3.04654 3.13806 3.26561 3.62244 3.80827 3.88420 3.97649 4.05362 4.16608 4.22276 4.30236 4.38487 4.49580 4.53282 4.58657 4.66579 4.69999 4.73228 4.83500 4.91831 4.95542 4.98726 5.00936 5.02014 5.08190 5.11680 5.36056 5.51976 5.58970 5.64385 5.97701 6.06114 6.32721 6.61518 6.89210 7.08521 7.32164 7.76733 8.29654 9.16208 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.003338 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.354181 B = 8387.257215 C = 8854.471077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.554 5.554 3 C 0.022 3.978 4 C 0.073 3.927 5 C -0.121 4.121 6 C 0.508 3.492 7 O -0.593 6.593 8 N -0.704 5.704 9 C 0.169 3.831 10 H 0.051 0.949 11 C -0.128 4.128 12 C 0.180 3.820 13 N -0.604 5.604 14 C -0.265 4.265 15 H 0.078 0.922 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.285 1.285 20 H -0.263 1.263 21 H -0.299 1.299 22 C 0.117 3.883 23 C 0.103 3.897 24 H 0.075 0.925 25 O -0.570 6.570 26 H 0.021 0.979 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.415 0.585 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.062 0.938 40 H -0.012 1.012 41 H 0.251 0.749 42 H 0.010 0.990 43 H 0.076 0.924 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 8.906 -19.327 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.278 5.278 3 C -0.126 4.126 4 C -0.055 4.055 5 C -0.161 4.161 6 C 0.295 3.705 7 O -0.474 6.474 8 N -0.354 5.354 9 C 0.063 3.937 10 H 0.070 0.930 11 C -0.168 4.168 12 C 0.054 3.946 13 N -0.328 5.328 14 C -0.395 4.395 15 H 0.096 0.904 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.800 3.200 19 H -0.212 1.212 20 H -0.187 1.187 21 H -0.226 1.226 22 C -0.010 4.010 23 C 0.042 3.958 24 H 0.093 0.907 25 O -0.378 6.378 26 H 0.040 0.960 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.252 0.748 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.006 0.994 41 H 0.060 0.940 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.003 9.725 -18.933 21.658 hybrid contribution -0.565 -0.813 1.690 1.958 sum -4.568 8.912 -17.244 19.941 Atomic orbital electron populations 1.22566 0.86390 1.03348 1.00949 1.62026 1.09072 1.14546 1.42110 1.22437 1.01045 0.88074 1.01021 1.21715 1.00148 0.92474 0.91176 1.21567 1.03902 0.94123 0.96527 1.21314 0.78832 0.82516 0.87788 1.90700 1.43417 1.70555 1.42734 1.45864 1.56933 1.07497 1.25133 1.20598 0.96364 0.90395 0.86296 0.93032 1.22238 0.98965 0.99663 0.95976 1.20446 0.96654 0.83546 0.93998 1.44243 1.54273 1.02148 1.32176 1.19591 1.36265 0.92550 0.91086 0.90447 1.25915 1.01904 1.00246 0.96665 1.70218 1.46317 1.34870 1.06888 0.85182 0.78508 0.79204 0.77102 1.21156 1.18706 1.22554 1.21709 0.92265 0.99258 0.87772 1.22288 0.92937 0.93900 0.86664 0.90676 1.86456 1.67086 1.35074 1.49139 0.96038 0.89883 0.90117 0.91331 0.89598 0.95955 0.95734 0.91507 0.86119 0.86568 0.74839 0.92591 0.91061 0.91978 0.99364 0.94045 0.97242 0.90541 0.75380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 127.69 1.19 1.40 16 2 N -0.55 -9.85 5.02 -948.83 -4.76 -14.61 16 3 C 0.02 0.34 9.57 127.69 1.22 1.56 16 4 C 0.07 1.62 4.25 86.30 0.37 1.99 16 5 C -0.12 -2.36 5.62 29.85 0.17 -2.19 16 6 C 0.51 14.84 7.79 87.66 0.68 15.53 16 7 O -0.59 -23.41 15.64 -3.05 -0.05 -23.46 16 8 N -0.70 -19.35 4.92 -442.40 -2.18 -21.53 16 9 C 0.17 6.01 2.12 45.02 0.10 6.10 16 10 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 11 C -0.13 -5.10 5.63 30.53 0.17 -4.92 16 12 C 0.18 9.00 5.28 86.22 0.45 9.45 16 13 N -0.60 -29.84 3.00 -699.92 -2.10 -31.94 16 14 C -0.27 -14.09 9.58 84.03 0.81 -13.29 16 15 H 0.08 3.89 7.89 -2.91 -0.02 3.86 16 16 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 17 N -0.94 -55.83 11.20 21.65 0.24 -55.59 16 18 Si 0.97 43.87 29.59 68.60 2.03 45.90 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 22 C 0.12 4.65 6.14 86.36 0.53 5.18 16 23 C 0.10 3.28 3.14 30.67 0.10 3.38 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 O -0.57 -15.21 13.16 -148.98 -1.96 -17.18 16 26 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 28 H 0.08 0.95 6.47 -2.39 -0.02 0.94 16 29 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.09 1.01 8.12 -2.38 -0.02 0.99 16 31 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.02 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.07 1.67 8.02 -2.38 -0.02 1.65 16 34 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.12 1.70 6.55 -2.39 -0.02 1.69 16 36 H 0.41 8.43 8.60 -92.71 -0.80 7.64 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 3.46 6.06 -2.39 -0.01 3.45 16 40 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 41 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.08 2.77 7.93 -2.39 -0.02 2.75 16 44 H 0.40 6.88 9.08 -74.05 -0.67 6.20 16 Total: -1.00 -72.05 351.29 -3.05 -75.10 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -0.48 Total: 21.54 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 6.20 Total: 21.76 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -8.79 Total: -123.67 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -2.01 Total: -40.63 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -72.05 -3.05 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099987238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.266 kcal (2) G-P(sol) polarization free energy of solvation -72.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds