Wall clock time and date at job start Tue Mar 31 2020 03:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86794 * 119.99978 * 2 1 4 4 H 1.48499 * 109.47292 * 275.00025 * 3 2 1 5 5 H 1.48498 * 109.47520 * 35.00039 * 3 2 1 6 6 H 1.48507 * 109.47051 * 155.00081 * 3 2 1 7 7 C 1.40132 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 174.94942 * 7 2 1 9 9 C 1.41824 * 119.99666 * 354.95154 * 7 2 1 10 10 O 1.21768 * 120.00002 * 5.04692 * 9 7 2 11 11 N 1.34774 * 119.99698 * 185.04934 * 9 7 2 12 12 C 1.39570 * 120.00093 * 184.47510 * 11 9 7 13 13 C 1.38940 * 120.10800 * 325.30265 * 12 11 9 14 14 C 1.38095 * 119.96522 * 179.97438 * 13 12 11 15 15 S 1.76204 * 119.89673 * 180.02562 * 14 13 12 16 16 N 1.65598 * 107.22179 * 89.99994 * 15 14 13 17 17 O 1.42102 * 106.39682 * 203.53971 * 15 14 13 18 18 O 1.42097 * 106.40291 * 336.45520 * 15 14 13 19 19 C 1.38393 * 120.19872 * 359.97438 * 14 13 12 20 20 C 1.38246 * 120.22016 * 359.78812 * 19 14 13 21 21 C 1.38537 * 120.02968 * 0.47013 * 20 19 14 22 22 O 1.35928 * 120.09818 * 179.78874 * 21 20 19 23 23 H 0.97002 * 119.99828 * 359.97438 * 1 2 3 24 24 H 0.97007 * 120.00260 * 4.47928 * 11 9 7 25 25 H 1.07991 * 120.01732 * 359.95980 * 13 12 11 26 26 H 0.97005 * 119.99912 * 359.97438 * 16 15 14 27 27 H 0.96997 * 120.00102 * 180.02562 * 16 15 14 28 28 H 1.07996 * 119.88696 * 180.02562 * 19 14 13 29 29 H 1.08001 * 119.98619 * 180.25384 * 20 19 14 30 30 H 0.96696 * 113.99702 * 269.71481 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3822 2.1074 -1.3947 5 1 1.4947 2.6199 0.8030 6 1 3.5868 1.4119 0.5917 7 6 2.0070 -1.2136 0.0005 8 1 3.0839 -1.2154 -0.0818 9 6 1.3020 -2.4393 0.1092 10 8 0.0843 -2.4434 0.1094 11 7 1.9798 -3.5997 0.2122 12 6 1.2892 -4.8125 0.2250 13 6 0.0420 -4.8980 0.8312 14 6 -0.6390 -6.0993 0.8417 15 16 -2.2209 -6.2056 1.6104 16 7 -3.3527 -5.8551 0.4535 17 8 -2.4087 -7.5714 1.9547 18 8 -2.2774 -5.1499 2.5599 19 6 -0.0830 -7.2198 0.2494 20 6 1.1553 -7.1425 -0.3603 21 6 1.8489 -5.9433 -0.3716 22 8 3.0685 -5.8669 -0.9669 23 1 -0.4850 0.8401 0.0004 24 1 2.9476 -3.5919 0.2776 25 1 -0.3947 -4.0255 1.2941 26 1 -3.0725 -5.6439 -0.4509 27 1 -4.2958 -5.8602 0.6803 28 1 -0.6201 -8.1567 0.2602 29 1 1.5838 -8.0182 -0.8249 30 1 3.8082 -6.0569 -0.3738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116668505.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:01 Heat of formation + Delta-G solvation = -126.014911 kcal Electronic energy + Delta-G solvation = -20401.025100 eV Core-core repulsion = 16902.691010 eV Total energy + Delta-G solvation = -3498.334090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.050 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91322 -37.54661 -36.84253 -36.42729 -35.54829 -33.66475 -32.97626 -32.51030 -30.17567 -29.11430 -26.52187 -22.99997 -22.61047 -20.29215 -19.25381 -18.51889 -17.99548 -17.43606 -17.14919 -15.99835 -15.94870 -15.49439 -15.45234 -14.98021 -14.62994 -14.12858 -13.53512 -13.20822 -12.79220 -12.60248 -12.15211 -11.99804 -11.92055 -11.81375 -11.65841 -11.46266 -11.18753 -10.77802 -10.70550 -10.54475 -10.39449 -10.28418 -9.57892 -9.00943 -8.87598 -7.85983 -7.33420 -6.47258 -4.99895 0.63913 1.03484 1.65374 3.00312 3.08603 3.12426 3.30542 3.60303 3.90352 3.97007 4.25959 4.30693 4.42417 4.83741 5.17082 5.35831 5.53538 5.80117 5.81686 6.08301 6.16266 6.22825 6.40704 6.55532 6.94833 7.16176 7.19007 7.55532 7.73636 7.91643 8.01596 8.71340 9.11590 10.26459 10.45199 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005605 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.562144 B = 4994.485363 C = 6191.243187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.087 3.913 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.541 3.459 10 O -0.567 6.567 11 N -0.691 5.691 12 C 0.151 3.849 13 C -0.016 4.016 14 C -0.664 4.664 15 S 2.705 3.295 16 N -1.249 6.249 17 O -0.976 6.976 18 O -0.961 6.961 19 C -0.055 4.055 20 C -0.146 4.146 21 C 0.101 3.899 22 O -0.489 6.489 23 H 0.275 0.725 24 H 0.395 0.605 25 H 0.169 0.831 26 H 0.419 0.581 27 H 0.416 0.584 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.653 -10.775 -0.502 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.351 3.649 10 O -0.451 6.451 11 N -0.335 5.335 12 C 0.049 3.951 13 C -0.038 4.038 14 C -0.754 4.754 15 S 2.795 3.205 16 N -0.923 5.923 17 O -0.965 6.965 18 O -0.950 6.950 19 C -0.076 4.076 20 C -0.166 4.166 21 C 0.052 3.948 22 O -0.299 6.299 23 H 0.086 0.914 24 H 0.228 0.772 25 H 0.187 0.813 26 H 0.246 0.754 27 H 0.246 0.754 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.728 -10.634 0.021 10.658 hybrid contribution 1.589 0.876 -0.621 1.918 sum 0.861 -9.758 -0.600 9.814 Atomic orbital electron populations 1.70000 1.07313 1.28139 1.31553 1.25775 0.94696 1.00785 0.92396 0.86228 0.80279 0.80673 0.78927 1.19561 1.20069 1.18607 1.20022 0.94747 0.89887 1.52281 0.91008 1.17151 0.87600 0.81950 0.78181 1.90625 1.13521 1.85292 1.55657 1.44116 1.09766 1.03744 1.75835 1.18394 0.94511 0.87422 0.94727 1.21349 0.93436 0.96125 0.92871 1.30318 1.23735 1.00528 1.20776 1.01302 0.72972 0.73606 0.72607 1.53001 1.21091 1.90971 1.27271 1.93561 1.85541 1.35586 1.81813 1.93623 1.86018 1.56751 1.58589 1.20547 0.95292 0.96607 0.95198 1.21168 0.96386 0.96917 1.02107 1.18704 0.88144 0.92874 0.95099 1.84869 1.13703 1.92807 1.38507 0.91445 0.77169 0.81343 0.75415 0.75405 0.84465 0.84970 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.94 11.75 55.55 0.65 -20.28 16 2 C 0.09 2.28 5.49 -17.35 -0.10 2.19 16 3 Si 0.92 18.94 29.56 -169.99 -5.03 13.92 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.53 -14.19 9.31 -37.50 -0.35 -14.54 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 C 0.54 14.60 7.41 -14.89 -0.11 14.49 16 10 O -0.57 -17.04 12.30 5.13 0.06 -16.97 16 11 N -0.69 -15.05 5.16 -12.30 -0.06 -15.12 16 12 C 0.15 3.04 6.32 -83.58 -0.53 2.52 16 13 C -0.02 -0.32 8.16 -39.37 -0.32 -0.64 16 14 C -0.66 -11.20 5.94 -39.58 -0.24 -11.43 16 15 S 2.71 41.93 6.28 -107.50 -0.67 41.25 16 16 N -1.25 -14.72 9.55 60.35 0.58 -14.15 16 17 O -0.98 -16.13 17.27 -57.17 -0.99 -17.11 16 18 O -0.96 -18.92 17.27 -57.17 -0.99 -19.91 16 19 C -0.06 -0.81 9.52 -39.52 -0.38 -1.18 16 20 C -0.15 -2.09 9.98 -39.47 -0.39 -2.48 16 21 C 0.10 1.66 6.73 -38.97 -0.26 1.40 16 22 O -0.49 -6.97 13.07 -19.51 -0.25 -7.22 16 23 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 24 H 0.39 7.29 8.52 -40.82 -0.35 6.94 16 25 H 0.17 4.05 5.74 -52.49 -0.30 3.75 16 26 H 0.42 4.40 8.92 -34.47 -0.31 4.09 16 27 H 0.42 3.87 8.96 -34.47 -0.31 3.56 16 28 H 0.14 1.65 7.61 -52.49 -0.40 1.25 16 29 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.38 3.39 9.06 45.56 0.41 3.80 16 LS Contribution 285.42 15.07 4.30 4.30 Total: -1.00 -37.40 285.42 -6.29 -43.69 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -1.22 Total: 17.28 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.67 Total: -9.68 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 1.17 Total: -49.55 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -2.17 Total: -61.22 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: 41.93 SS G_CDS: -0.67 Total: 41.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -37.40 -6.29 -43.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116668505.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.320 kcal (2) G-P(sol) polarization free energy of solvation -37.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds