Wall clock time and date at job start Tue Mar 31 2020 03:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34735 * 116.99974 * 2 1 4 4 O 1.21482 * 119.99794 * 359.97438 * 3 2 1 5 5 C 1.47607 * 119.99956 * 179.97438 * 3 2 1 6 6 C 1.40040 * 120.98308 * 359.97438 * 5 3 2 7 7 C 1.37901 * 119.08367 * 179.97438 * 6 5 3 8 8 N 1.31953 * 121.14687 * 0.02562 * 7 6 5 9 9 C 1.31545 * 122.19051 * 359.97438 * 8 7 6 10 10 C 1.39218 * 120.76883 * 0.25972 * 9 8 7 11 11 N 1.38850 * 120.61321 * 179.74171 * 10 9 8 12 12 S 1.65600 * 120.00096 * 324.62975 * 11 10 9 13 13 O 1.42095 * 106.40471 * 181.30761 * 12 11 10 14 14 O 1.42100 * 106.40073 * 314.22953 * 12 11 10 15 15 C 1.76204 * 107.21638 * 67.76667 * 12 11 10 16 16 H 1.07995 * 119.99998 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00138 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99918 * 0.02562 * 17 15 12 19 19 Si 1.86796 * 120.00031 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47209 * 90.00000 * 19 17 15 21 21 H 1.48501 * 109.47048 * 210.00043 * 19 17 15 22 22 H 1.48503 * 109.47451 * 330.00077 * 19 17 15 23 23 H 1.09001 * 109.47387 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47433 * 300.00466 * 1 2 3 25 25 H 1.09008 * 109.47052 * 60.00415 * 1 2 3 26 26 H 1.07996 * 120.45476 * 0.02585 * 6 5 3 27 27 H 1.08005 * 119.42816 * 180.02562 * 7 6 5 28 28 H 1.08002 * 119.61527 * 179.97438 * 9 8 7 29 29 H 0.96996 * 120.00272 * 144.63470 * 11 10 9 30 30 H 0.96993 * 119.99841 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5377 1.2777 0.0006 6 6 4.3204 0.1165 0.0017 7 6 5.6944 0.2343 0.0016 8 7 6.2780 1.4178 0.0011 9 6 5.5894 2.5386 0.0001 10 6 4.1974 2.5194 0.0049 11 7 3.4739 3.7045 0.0092 12 16 4.0434 5.0193 0.8393 13 8 3.0756 6.0469 0.6764 14 8 4.4626 4.5409 2.1100 15 6 5.4977 5.5696 0.0104 16 1 5.8455 5.0515 -0.8710 17 6 6.1915 6.6615 0.4871 18 7 5.7682 7.2921 1.5608 19 14 7.7328 7.2452 -0.3921 20 1 7.3640 8.2440 -1.4273 21 1 8.6568 7.8680 0.5895 22 1 8.4030 6.0878 -1.0375 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.8544 -0.8577 0.0017 27 1 6.3035 -0.6576 0.0020 28 1 6.1101 3.4849 0.0001 29 1 2.6348 3.7622 -0.4739 30 1 6.2561 8.0605 1.8959 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:33 Heat of formation + Delta-G solvation = -130.992382 kcal Electronic energy + Delta-G solvation = -20737.629410 eV Core-core repulsion = 17239.079480 eV Total energy + Delta-G solvation = -3498.549930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.050 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83966 -39.50330 -36.66969 -35.51947 -34.92735 -34.19349 -33.26414 -32.44972 -29.27309 -27.89644 -26.46909 -24.65974 -23.03456 -21.37196 -19.20137 -18.41104 -17.72964 -17.42565 -16.94393 -16.51320 -16.41349 -15.52153 -15.08769 -14.88322 -14.23529 -14.13418 -13.83896 -13.53036 -13.45224 -13.16612 -12.54608 -12.17382 -12.11524 -11.38514 -11.27739 -11.11535 -10.91502 -10.88124 -10.64365 -10.54158 -10.48615 -10.41339 -9.69144 -9.39483 -9.30929 -8.99423 -8.10331 -6.84566 -5.51957 0.67985 1.29107 1.97393 2.53347 2.61004 3.03112 3.10229 3.16794 3.93150 3.95932 4.27535 4.49115 4.59104 4.79272 4.85765 4.96670 5.04646 5.06072 5.24395 5.37536 5.54822 5.70779 5.86095 6.10867 6.16036 6.17684 6.58293 6.79495 7.16661 7.52071 7.70468 7.74896 8.12649 8.71668 10.09787 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.006260 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.150028 B = 4471.503219 C = 5326.245059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.516 3.484 4 O -0.498 6.498 5 C -0.140 4.140 6 C -0.092 4.092 7 C 0.043 3.957 8 N -0.426 5.426 9 C 0.055 3.945 10 C 0.217 3.783 11 N -1.050 6.050 12 S 2.692 3.308 13 O -0.987 6.987 14 O -0.986 6.986 15 C -1.026 5.026 16 H 0.113 0.887 17 C 0.135 3.865 18 N -0.837 5.837 19 Si 0.925 3.075 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.257 1.257 23 H 0.102 0.898 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.148 0.852 27 H 0.162 0.838 28 H 0.200 0.800 29 H 0.426 0.574 30 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -14.306 -5.098 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.385 6.385 5 C -0.154 4.154 6 C -0.113 4.113 7 C -0.112 4.112 8 N -0.135 5.135 9 C -0.109 4.109 10 C 0.111 3.889 11 N -0.793 5.793 12 S 2.793 3.207 13 O -0.978 6.978 14 O -0.976 6.976 15 C -1.159 5.159 16 H 0.131 0.869 17 C -0.084 4.084 18 N -0.466 5.466 19 Si 0.748 3.252 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.181 1.181 23 H 0.120 0.880 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.165 0.835 27 H 0.179 0.821 28 H 0.216 0.784 29 H 0.265 0.735 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.411 -13.413 -4.069 14.426 hybrid contribution -0.497 0.315 -1.010 1.169 sum -3.908 -13.098 -5.079 14.581 Atomic orbital electron populations 1.23299 0.75884 1.03682 1.02901 1.86525 1.23605 1.32380 1.84553 1.20928 0.88513 0.81558 0.72865 1.90766 1.66502 1.35737 1.45516 1.19256 0.89631 0.94015 1.12495 1.22258 0.94948 0.98054 0.95998 1.22633 0.91917 0.95902 1.00754 1.67520 1.40588 0.98146 1.07257 1.24048 0.88768 0.99582 0.98512 1.18609 0.92456 0.85749 0.92087 1.54482 1.34175 1.24560 1.66093 1.01440 0.75473 0.70281 0.73486 1.93408 1.64036 1.53688 1.86622 1.93421 1.83542 1.80260 1.40386 1.30513 1.31755 1.25991 1.27637 0.86948 1.24764 0.98036 0.92820 0.92814 1.69883 1.39007 1.18419 1.19264 0.86077 0.79848 0.79664 0.79628 1.19075 1.19793 1.18115 0.87963 0.91631 0.91713 0.83454 0.82081 0.78393 0.73480 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.47 9.92 -40.59 -0.40 -4.87 16 3 C 0.52 8.29 7.91 34.55 0.27 8.57 16 4 O -0.50 -9.17 13.89 -19.25 -0.27 -9.44 16 5 C -0.14 -2.33 5.92 -104.51 -0.62 -2.95 16 6 C -0.09 -1.20 9.70 -39.03 -0.38 -1.58 16 7 C 0.04 0.58 11.15 -17.62 -0.20 0.38 16 8 N -0.43 -7.40 10.32 -13.12 -0.14 -7.53 16 9 C 0.05 1.07 10.23 -17.31 -0.18 0.90 16 10 C 0.22 4.26 6.18 -83.43 -0.52 3.74 16 11 N -1.05 -22.65 5.13 32.64 0.17 -22.48 16 12 S 2.69 71.48 4.66 -107.50 -0.50 70.98 16 13 O -0.99 -28.97 18.02 -57.17 -1.03 -30.00 16 14 O -0.99 -28.61 17.51 -57.17 -1.00 -29.61 16 15 C -1.03 -26.71 7.66 30.60 0.23 -26.47 16 16 H 0.11 2.60 6.76 -52.49 -0.36 2.24 16 17 C 0.14 3.60 5.46 -17.82 -0.10 3.50 16 18 N -0.84 -23.71 13.19 55.43 0.73 -22.98 16 19 Si 0.92 19.63 29.54 -169.99 -5.02 14.61 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.15 1.39 7.71 -52.49 -0.40 0.99 16 27 H 0.16 1.51 8.06 -52.48 -0.42 1.08 16 28 H 0.20 4.17 4.44 -52.49 -0.23 3.93 16 29 H 0.43 8.58 6.69 -34.46 -0.23 8.35 16 30 H 0.29 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 284.65 15.07 4.29 4.29 Total: -1.00 -34.75 284.65 -5.63 -40.38 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.05 Total: 9.16 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.41 Total: -12.50 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.76 Total: -52.99 kcal Atomic # 8 Polarization: -71.22 SS G_CDS: -2.70 Total: -73.92 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 71.48 SS G_CDS: -0.50 Total: 70.98 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.75 -5.63 -40.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.610 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds