Wall clock time and date at job start Tue Mar 31 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47438 * 2 1 4 4 N 1.46901 * 109.47216 * 120.00391 * 2 1 3 5 5 C 1.46902 * 111.00040 * 56.04015 * 4 2 1 6 6 C 1.46899 * 111.00103 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.47107 * 169.99758 * 6 4 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.64024 * 34.29331 * 10 9 7 12 12 C 1.54327 * 110.71639 * 271.15408 * 10 9 7 13 13 N 1.47029 * 107.26712 * 219.44116 * 12 10 9 14 14 C 1.36942 * 125.64373 * 178.90692 * 13 12 10 15 15 H 1.07995 * 119.99680 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99737 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47219 * 59.99950 * 18 16 14 20 20 H 1.48504 * 109.47054 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47117 * 299.99788 * 18 16 14 22 22 C 1.47423 * 108.70516 * 358.94522 * 13 12 10 23 23 C 1.55121 * 104.94129 * 23.99719 * 22 13 12 24 24 H 1.09007 * 110.93255 * 81.22414 * 23 22 13 25 25 O 1.42906 * 111.16162 * 205.13036 * 23 22 13 26 26 H 1.09007 * 109.47009 * 300.00145 * 1 2 3 27 27 H 1.08998 * 109.47119 * 59.99871 * 1 2 3 28 28 H 1.08997 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47009 * 239.99855 * 2 1 3 30 30 H 1.08997 * 109.47058 * 59.99992 * 3 2 1 31 31 H 1.09004 * 109.47377 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47071 * 300.00158 * 3 2 1 33 33 H 1.09005 * 109.46528 * 183.95480 * 5 4 2 34 34 H 1.09000 * 109.46785 * 303.95569 * 5 4 2 35 35 H 1.08997 * 109.47044 * 63.96124 * 5 4 2 36 36 H 1.09002 * 109.47043 * 289.99738 * 6 4 2 37 37 H 1.09001 * 109.47354 * 49.99799 * 6 4 2 38 38 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 39 39 H 1.08996 * 109.88605 * 338.85667 * 12 10 9 40 40 H 1.09001 * 109.87994 * 99.87769 * 12 10 9 41 41 H 0.97002 * 120.00307 * 180.02562 * 17 16 14 42 42 H 1.08993 * 110.36800 * 142.96801 * 22 13 12 43 43 H 1.09008 * 110.35998 * 265.18122 * 22 13 12 44 44 H 0.96702 * 113.99924 * 292.17458 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.4729 -2.0536 1.2816 6 6 3.4881 -0.7127 1.2330 7 6 3.9531 -1.2051 2.5793 8 8 3.1411 -1.5089 3.4274 9 7 5.2712 -1.3070 2.8412 10 6 5.7232 -1.7862 4.1497 11 1 5.0375 -2.5374 4.5416 12 6 5.8705 -0.6118 5.1401 13 7 7.0790 -0.8634 5.9388 14 6 7.5735 -0.0436 6.9179 15 1 7.0645 0.8779 7.1585 16 6 8.7291 -0.3972 7.6010 17 7 9.3497 -1.5201 7.3073 18 14 9.4041 0.7214 8.9360 19 1 8.3887 0.8817 10.0077 20 1 10.6370 0.1223 9.5072 21 1 9.7236 2.0498 8.3541 22 6 7.6707 -2.1440 5.5104 23 6 7.1647 -2.3526 4.0590 24 1 7.7653 -1.7812 3.3512 25 8 7.1494 -3.7389 3.7122 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.7948 -2.5187 2.2133 34 1 0.3841 -2.0099 1.2544 35 1 1.8341 -2.6418 0.4380 36 1 3.8603 -1.3784 0.4543 37 1 3.8693 0.2942 1.0630 38 1 5.9206 -1.0636 2.1630 39 1 5.9767 0.3243 4.5920 40 1 4.9971 -0.5636 5.7904 41 1 10.1570 -1.7673 7.7848 42 1 8.7588 -2.0842 5.5290 43 1 7.3249 -2.9549 6.1517 44 1 8.0281 -4.1369 3.6437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199119375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:02 Heat of formation + Delta-G solvation = -69.121331 kcal Electronic energy + Delta-G solvation = -23417.100748 eV Core-core repulsion = 19983.698823 eV Total energy + Delta-G solvation = -3433.401925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17421 -39.69296 -38.44259 -36.69532 -35.53128 -33.67589 -32.99131 -30.68595 -29.76570 -28.72276 -27.25850 -26.25705 -25.33704 -22.54030 -21.98017 -21.39823 -20.80699 -19.10794 -18.52106 -17.99806 -17.38496 -17.18145 -16.61126 -15.97172 -15.88589 -15.71703 -15.54888 -15.00232 -14.76541 -14.68897 -14.07731 -13.91734 -13.77495 -13.44245 -13.21419 -13.19812 -13.12511 -12.93459 -12.74418 -12.69928 -12.67073 -12.31387 -12.09986 -11.93139 -11.92760 -11.53362 -11.43399 -11.11467 -10.78285 -10.69093 -10.12997 -9.23567 -8.98087 -7.82486 -5.29069 1.47245 1.50591 1.56853 1.66741 1.99816 2.46884 3.00690 3.07751 3.28932 3.62703 3.71354 3.91193 3.97741 4.06016 4.08612 4.19971 4.30780 4.32403 4.42653 4.45297 4.59060 4.60408 4.62060 4.83896 4.85043 4.93598 4.95272 4.97789 5.06197 5.14492 5.34342 5.36594 5.43175 5.43471 5.50258 5.66993 5.97972 6.18632 6.20552 6.61369 6.86051 7.04216 7.32060 7.68295 8.30652 9.19011 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.003460 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.720460 B = 8089.631839 C = 8720.934385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.148 4.148 4 N -0.542 5.542 5 C 0.020 3.980 6 C 0.041 3.959 7 C 0.509 3.491 8 O -0.567 6.567 9 N -0.705 5.705 10 C 0.159 3.841 11 H 0.072 0.928 12 C 0.132 3.868 13 N -0.619 5.619 14 C -0.247 4.247 15 H 0.080 0.920 16 C -0.060 4.060 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.273 1.273 22 C 0.133 3.867 23 C 0.093 3.907 24 H 0.090 0.910 25 O -0.568 6.568 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.416 0.584 39 H 0.042 0.958 40 H 0.010 0.990 41 H 0.251 0.749 42 H 0.091 0.909 43 H -0.012 1.012 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 1.844 -19.956 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.206 4.206 4 N -0.268 5.268 5 C -0.128 4.128 6 C -0.090 4.090 7 C 0.296 3.704 8 O -0.445 6.445 9 N -0.358 5.358 10 C 0.052 3.948 11 H 0.090 0.910 12 C 0.006 3.994 13 N -0.346 5.346 14 C -0.376 4.376 15 H 0.098 0.902 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.198 1.198 22 C 0.007 3.993 23 C 0.032 3.968 24 H 0.107 0.893 25 O -0.376 6.376 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.006 0.994 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.121 1.996 -18.829 21.959 hybrid contribution 1.485 -0.211 0.443 1.564 sum -9.636 1.785 -18.386 20.835 Atomic orbital electron populations 1.21905 0.93637 1.02242 1.02503 1.21764 0.96395 0.95340 0.89761 1.21939 1.01404 0.94630 1.02585 1.61671 1.06008 1.18442 1.40698 1.22509 1.01141 0.88341 1.00812 1.22064 0.89997 1.04419 0.92492 1.21270 0.81735 0.76781 0.90587 1.90666 1.54097 1.50068 1.49716 1.45771 1.07547 1.67338 1.15170 1.21454 0.94914 0.94523 0.83884 0.91019 1.21668 0.88895 0.96488 0.92388 1.44537 1.26375 1.22119 1.41613 1.19423 1.06248 1.01202 1.10710 0.90187 1.25637 0.98322 0.99132 1.02228 1.69950 1.20582 1.24449 1.44571 0.85072 0.77160 0.78055 0.78532 1.20883 1.21557 1.19843 1.22410 1.00616 0.85954 0.90313 1.23273 0.94498 0.82632 0.96397 0.89272 1.86387 1.35772 1.23197 1.92219 0.92973 0.90328 0.92382 0.92967 0.93031 0.91880 0.90291 0.92499 0.90255 0.94958 0.89515 0.85363 0.74714 0.94054 0.97161 0.93938 0.89075 0.99351 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 71.98 0.64 -1.45 16 2 C 0.07 1.17 2.67 44.91 0.12 1.29 16 3 C -0.15 -2.03 8.99 71.98 0.65 -1.38 16 4 N -0.54 -12.02 4.37 -901.60 -3.94 -15.96 16 5 C 0.02 0.45 8.84 127.69 1.13 1.58 16 6 C 0.04 0.82 5.26 85.56 0.45 1.27 16 7 C 0.51 15.17 7.55 87.66 0.66 15.83 16 8 O -0.57 -22.45 14.00 -3.02 -0.04 -22.49 16 9 N -0.71 -20.11 5.12 -436.93 -2.24 -22.34 16 10 C 0.16 6.02 3.00 46.18 0.14 6.16 16 11 H 0.07 3.15 7.62 -2.39 -0.02 3.13 16 12 C 0.13 5.92 7.00 86.73 0.61 6.53 16 13 N -0.62 -32.50 3.40 -691.55 -2.35 -34.85 16 14 C -0.25 -14.01 10.27 84.03 0.86 -13.15 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 17 N -0.95 -54.98 10.09 21.65 0.22 -54.77 16 18 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.13 6.49 5.64 86.93 0.49 6.98 16 23 C 0.09 3.37 4.06 32.06 0.13 3.50 16 24 H 0.09 2.81 8.01 -2.38 -0.02 2.79 16 25 O -0.57 -18.58 13.48 -148.98 -2.01 -20.59 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 6.26 -2.39 -0.01 0.81 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.77 6.20 -2.39 -0.01 0.76 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.70 5.88 -2.38 -0.01 1.68 16 34 H 0.08 1.61 6.01 -2.39 -0.01 1.60 16 35 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 37 H 0.13 2.04 5.83 -2.39 -0.01 2.02 16 38 H 0.42 8.70 8.54 -92.70 -0.79 7.91 16 39 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.09 4.84 5.87 -2.39 -0.01 4.83 16 43 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 44 H 0.40 9.50 9.12 -74.06 -0.68 8.82 16 Total: -1.00 -73.42 345.69 -2.45 -75.86 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.46 Total: 23.68 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 6.34 Total: 24.25 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -8.30 Total: -127.92 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -2.05 Total: -43.08 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.42 -2.45 -75.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199119375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.742 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds