Wall clock time and date at job start Tue Mar 31 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99901 * 2 1 4 4 C 1.50696 * 109.47341 * 293.95682 * 3 2 1 5 5 H 1.08008 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00114 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00170 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00136 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47219 * 59.99691 * 8 6 4 10 10 H 1.48498 * 109.47292 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47214 * 299.99599 * 8 6 4 12 12 C 1.46894 * 110.99955 * 123.95540 * 2 1 3 13 13 C 1.53003 * 109.47283 * 66.04903 * 12 2 1 14 14 H 1.09004 * 109.47149 * 305.00089 * 13 12 2 15 15 O 1.42902 * 109.47042 * 64.99584 * 13 12 2 16 16 C 1.52997 * 109.47071 * 184.99927 * 13 12 2 17 17 N 1.46904 * 109.46950 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00029 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.47107 * 179.97438 * 18 17 16 20 20 O 1.21278 * 119.99985 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.46496 * 120.00271 * 180.02562 * 21 19 18 23 23 C 1.53005 * 117.49766 * 223.74434 * 22 21 19 24 24 C 1.52999 * 117.49938 * 155.08536 * 22 21 19 25 25 H 1.08997 * 109.46962 * 296.04243 * 1 2 3 26 26 H 1.09003 * 109.47103 * 56.04365 * 1 2 3 27 27 H 1.09003 * 109.46735 * 176.04315 * 1 2 3 28 28 H 1.09003 * 109.47141 * 53.95361 * 3 2 1 29 29 H 1.09000 * 109.47139 * 173.95135 * 3 2 1 30 30 H 0.96994 * 120.00461 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47742 * 306.04590 * 12 2 1 32 32 H 1.09010 * 109.46775 * 186.04408 * 12 2 1 33 33 H 0.96695 * 113.99730 * 60.00759 * 15 13 12 34 34 H 1.08995 * 109.47319 * 59.99998 * 16 13 12 35 35 H 1.09003 * 109.47435 * 299.99322 * 16 13 12 36 36 H 1.00908 * 110.99583 * 303.94989 * 17 16 13 37 37 H 1.09002 * 109.47043 * 299.99792 * 18 17 16 38 38 H 1.09001 * 109.47354 * 59.99854 * 18 17 16 39 39 H 0.97005 * 119.99463 * 359.97438 * 21 19 18 40 40 H 1.09003 * 115.54970 * 9.41184 * 22 21 19 41 41 H 1.08997 * 117.49943 * 359.97438 * 23 22 21 42 42 H 1.08996 * 117.49715 * 145.01792 * 23 22 21 43 43 H 1.09004 * 117.49551 * 214.98056 * 24 22 21 44 44 H 1.08999 * 117.49733 * 359.97429 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 2.7128 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1385 9 1 0.1066 4.2238 -3.2863 10 1 2.1158 5.5730 -3.1385 11 1 2.1755 3.4289 -4.2703 12 6 1.9954 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5532 -2.3390 0.8431 15 8 2.2956 -2.7695 -0.1802 16 6 2.0700 -3.0199 2.2130 17 7 1.7211 -4.4378 2.0520 18 6 2.1276 -5.2169 3.2292 19 6 1.7537 -6.6629 3.0283 20 8 1.2024 -7.0101 2.0054 21 7 2.0310 -7.5700 3.9858 22 6 1.6680 -8.9757 3.7902 23 6 1.0301 -9.7114 4.9704 24 6 2.4708 -10.0263 4.5600 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3444 0.1083 30 1 2.9874 4.9177 -0.7772 31 1 1.5612 -0.3873 2.0628 32 1 3.0798 -0.6611 1.1755 33 1 3.2601 -2.7167 -0.1361 34 1 1.5634 -2.6180 3.0904 35 1 3.1483 -2.9237 2.3400 36 1 0.7352 -4.5490 1.8681 37 1 3.2062 -5.1355 3.3641 38 1 1.6207 -4.8304 4.1135 39 1 2.4716 -7.2921 4.8041 40 1 1.3255 -9.2380 2.7891 41 1 0.8809 -9.1496 5.8924 42 1 0.2683 -10.4578 4.7458 43 1 2.6562 -10.9799 4.0655 44 1 3.2693 -9.6716 5.2117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335935313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:54 Heat of formation + Delta-G solvation = -49.433915 kcal Electronic energy + Delta-G solvation = -21947.221235 eV Core-core repulsion = 18514.673021 eV Total energy + Delta-G solvation = -3432.548215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12653 -38.24987 -37.47199 -35.83815 -34.72387 -33.20627 -32.49100 -30.15315 -27.69979 -26.87428 -25.23159 -23.33499 -22.89176 -22.16645 -21.37098 -20.89143 -20.12229 -17.69800 -17.02739 -16.46812 -16.41945 -15.67889 -15.48312 -15.20521 -14.95491 -14.55609 -14.33847 -14.27017 -13.96307 -13.42037 -13.25573 -13.04931 -12.64103 -12.49773 -12.10119 -11.99537 -11.84956 -11.70599 -11.30753 -11.06818 -11.00834 -10.86536 -10.74247 -10.64603 -10.27638 -10.15454 -9.93525 -9.53227 -9.17806 -9.08562 -8.57474 -8.40863 -7.17005 -6.00369 -4.01197 2.28462 2.58671 3.36642 3.39852 3.43774 3.43976 3.92554 4.28273 4.38465 4.45308 4.46377 4.50661 4.73081 4.85284 4.93648 5.03389 5.12182 5.18737 5.31018 5.33144 5.37036 5.46175 5.55907 5.56499 5.61279 5.69787 6.06598 6.07907 6.21080 6.32146 6.42737 6.65622 6.79367 7.06445 7.19781 7.29274 7.34465 7.83006 7.91512 8.08269 8.18841 8.24563 8.58222 9.06618 9.62879 11.10558 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.060151 B = 0.002137 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.383196 B =13096.563786 C =13226.364249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.026 3.974 13 C 0.117 3.883 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.027 3.973 17 N -0.662 5.662 18 C 0.042 3.958 19 C 0.516 3.484 20 O -0.517 6.517 21 N -0.709 5.709 22 C 0.081 3.919 23 C -0.195 4.195 24 C -0.190 4.190 25 H 0.008 0.992 26 H 0.075 0.925 27 H 0.047 0.953 28 H -0.011 1.011 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.368 0.632 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.352 0.648 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.401 0.599 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -23.762 15.379 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.103 4.103 17 N -0.295 5.295 18 C -0.091 4.091 19 C 0.302 3.698 20 O -0.390 6.390 21 N -0.360 5.360 22 C -0.025 4.025 23 C -0.234 4.234 24 C -0.228 4.228 25 H 0.026 0.974 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.006 0.994 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.214 0.786 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.171 0.829 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.235 0.765 40 H 0.156 0.844 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.463 -24.279 13.644 27.854 hybrid contribution -0.249 1.505 1.502 2.141 sum -0.712 -22.774 15.146 27.360 Atomic orbital electron populations 1.22264 0.89035 0.99594 1.00388 1.62009 1.06793 1.17411 1.39155 1.19738 0.95276 0.81591 0.96592 1.21144 1.34716 0.96854 1.01698 0.91811 1.24996 0.95328 0.97356 0.97039 1.69947 1.38502 1.11480 1.34157 0.86537 0.78683 0.78229 0.83822 1.20309 1.21418 1.20093 1.22724 1.00572 0.93823 0.93317 1.21868 0.97719 0.90570 0.84241 0.88897 1.86621 1.22853 1.83858 1.40359 1.22786 1.01702 0.87385 0.98418 1.60052 1.25178 1.08350 1.35887 1.21810 1.02927 0.90519 0.93856 1.20692 0.78365 0.87773 0.82985 1.90741 1.40614 1.80676 1.26991 1.45395 1.62423 1.06991 1.21216 1.21595 1.02933 0.79839 0.98122 1.23443 0.96310 1.03848 0.99760 1.23390 0.94908 1.00543 1.03993 0.97397 0.90635 0.93447 0.99352 0.95349 0.92931 0.95561 0.91078 0.78594 0.94467 0.90438 0.82859 0.87964 0.92438 0.76506 0.84412 0.88536 0.87963 0.87824 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.07 0.55 1.27 16 2 N -0.53 -11.65 4.70 -244.37 -1.15 -12.80 16 3 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 4 C -0.51 -14.49 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.82 7.12 -52.48 -0.37 1.45 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.03 0.44 4.59 -3.83 -0.02 0.42 16 13 C 0.12 1.71 3.13 -26.73 -0.08 1.62 16 14 H 0.09 1.42 6.34 -51.93 -0.33 1.10 16 15 O -0.53 -8.88 13.15 -35.23 -0.46 -9.35 16 16 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 17 N -0.66 -7.59 5.99 -115.05 -0.69 -8.28 16 18 C 0.04 0.35 6.17 -4.98 -0.03 0.31 16 19 C 0.52 5.20 7.87 -10.98 -0.09 5.11 16 20 O -0.52 -7.59 15.77 5.56 0.09 -7.50 16 21 N -0.71 -4.90 5.57 -53.81 -0.30 -5.20 16 22 C 0.08 0.57 6.43 -67.93 -0.44 0.14 16 23 C -0.19 -1.00 10.46 -26.69 -0.28 -1.28 16 24 C -0.19 -0.92 10.46 -26.69 -0.28 -1.20 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 27 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 28 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 29 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 1.21 7.93 -51.92 -0.41 0.79 16 33 H 0.37 5.08 9.04 45.56 0.41 5.50 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.35 4.32 8.43 -39.29 -0.33 3.99 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 40 H 0.14 1.23 7.40 -51.93 -0.38 0.84 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -34.82 365.55 -9.04 -43.86 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.66 Total: 4.60 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.10 Total: -1.57 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -1.40 Total: -52.55 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.38 Total: -16.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.82 -9.04 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335935313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.574 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds