Wall clock time and date at job start Tue Mar 31 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1 5 5 H 1.08005 * 120.00268 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99915 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99666 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00290 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47128 * 89.99741 * 8 6 4 10 10 H 1.48501 * 109.47251 * 209.99489 * 8 6 4 11 11 H 1.48497 * 109.47002 * 329.99797 * 8 6 4 12 12 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 13 13 C 1.53006 * 109.46682 * 66.04945 * 12 2 1 14 14 H 1.08992 * 109.47000 * 304.99758 * 13 12 2 15 15 O 1.42896 * 109.47092 * 65.00321 * 13 12 2 16 16 C 1.52998 * 109.46580 * 185.00096 * 13 12 2 17 17 N 1.46905 * 109.46800 * 180.02562 * 16 13 12 18 18 C 1.46905 * 110.99709 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46754 * 180.02562 * 18 17 16 20 20 H 1.09004 * 110.64160 * 305.69885 * 19 18 17 21 21 C 1.54595 * 110.72307 * 182.55095 * 19 18 17 22 22 C 1.53995 * 105.13753 * 219.68188 * 21 19 18 23 23 N 1.47900 * 107.06088 * 358.77356 * 22 21 19 24 24 C 1.46894 * 111.00529 * 145.84201 * 23 22 21 25 25 C 1.48734 * 105.94090 * 25.19882 * 23 22 21 26 26 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 27 27 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 29 29 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 30 30 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 31 31 H 0.97001 * 119.99343 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46988 * 186.04548 * 12 2 1 33 33 H 1.08996 * 109.46945 * 306.05035 * 12 2 1 34 34 H 0.96700 * 114.00334 * 59.99649 * 15 13 12 35 35 H 1.08998 * 109.47578 * 299.99682 * 16 13 12 36 36 H 1.09003 * 109.47564 * 59.99956 * 16 13 12 37 37 H 1.00899 * 110.99660 * 303.95095 * 17 16 13 38 38 H 1.08991 * 109.46998 * 299.99254 * 18 17 16 39 39 H 1.08998 * 109.47121 * 59.99981 * 18 17 16 40 40 H 1.09003 * 110.30701 * 338.59571 * 21 19 18 41 41 H 1.08994 * 110.31203 * 100.76740 * 21 19 18 42 42 H 1.08996 * 109.91745 * 118.12438 * 22 21 19 43 43 H 1.08996 * 109.91568 * 239.22341 * 22 21 19 44 44 H 1.09008 * 109.46768 * 60.12671 * 24 23 22 45 45 H 1.08998 * 109.47684 * 180.12417 * 24 23 22 46 46 H 1.09001 * 109.47396 * 300.12893 * 24 23 22 47 47 H 1.09007 * 110.83572 * 202.57531 * 25 23 22 48 48 H 1.09000 * 110.57950 * 79.38854 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0745 1.5112 -2.0489 6 6 2.0274 3.3492 -1.5289 7 7 2.7126 4.0016 -0.6153 8 14 1.5824 4.1870 -3.1381 9 1 0.2704 4.8680 -2.9953 10 1 2.6248 5.1878 -3.4800 11 1 1.4980 3.1713 -4.2181 12 6 1.9955 -0.7659 1.1376 13 6 1.6316 -2.2426 0.9703 14 1 0.5534 -2.3389 0.8432 15 8 2.2958 -2.7695 -0.1800 16 6 2.0701 -3.0198 2.2130 17 7 1.7212 -4.4377 2.0522 18 6 2.1278 -5.2167 3.2295 19 6 1.7493 -6.6850 3.0250 20 1 0.6895 -6.7792 2.7881 21 6 2.1069 -7.5213 4.2750 22 6 2.6581 -8.8501 3.7256 23 7 2.5836 -8.7740 2.2504 24 6 3.7075 -9.4871 1.6290 25 6 2.6184 -7.3256 1.9139 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 1.5610 1.9274 0.8308 30 1 3.0796 1.3445 0.1082 31 1 2.9870 4.9178 -0.7774 32 1 3.0798 -0.6610 1.1755 33 1 1.5611 -0.3872 2.0627 34 1 3.2603 -2.7165 -0.1360 35 1 3.1484 -2.9235 2.3401 36 1 1.5635 -2.6179 3.0905 37 1 0.7354 -4.5489 1.8683 38 1 3.2063 -5.1353 3.3642 39 1 1.6209 -4.8301 4.1136 40 1 2.8678 -7.0117 4.8662 41 1 1.2165 -7.7013 4.8773 42 1 3.6940 -8.9803 4.0388 43 1 2.0535 -9.6813 4.0884 44 1 3.6805 -10.5359 1.9248 45 1 3.6294 -9.4134 0.5443 46 1 4.6466 -9.0412 1.9568 47 1 2.1816 -7.1452 0.9316 48 1 3.6395 -6.9466 1.9576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336734628.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:42 Heat of formation + Delta-G solvation = -42.357392 kcal Electronic energy + Delta-G solvation = -22716.139555 eV Core-core repulsion = 19419.731296 eV Total energy + Delta-G solvation = -3296.408259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 285.216 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.42862 -38.18327 -36.08138 -35.04867 -32.63997 -32.46613 -30.15553 -28.89749 -27.18015 -26.70052 -25.63098 -24.03201 -22.86182 -21.41451 -21.26787 -20.38574 -20.12463 -16.63932 -16.44864 -16.38900 -15.82985 -15.47494 -15.14535 -14.87278 -14.59578 -14.32037 -14.27827 -14.04442 -13.53141 -13.43933 -13.35041 -12.81448 -12.46297 -12.20958 -12.05766 -11.86773 -11.75448 -11.60085 -11.41358 -11.26351 -11.13141 -11.05243 -10.89029 -10.79724 -10.72860 -10.67468 -10.25594 -9.95557 -9.53898 -9.08206 -8.72774 -8.50197 -8.42481 -7.18285 -6.01535 -4.02358 3.33279 3.39272 3.44777 3.70192 3.87770 4.35191 4.39511 4.45538 4.62484 4.77848 4.84238 4.92006 5.06084 5.11454 5.13211 5.18488 5.22284 5.33174 5.38463 5.41959 5.42904 5.44995 5.56159 5.58211 5.60744 5.64899 5.69067 5.71571 5.91638 6.00036 6.05624 6.18978 6.31604 6.42984 6.57973 6.72193 6.76785 6.84889 7.22736 7.28091 7.33421 7.81966 8.06389 8.16325 8.22695 8.56889 9.05720 9.61811 11.09462 Molecular weight = 285.22amu Principal moments of inertia in cm(-1) A = 0.040558 B = 0.002328 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.211698 B =12023.503995 C =12292.123361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.535 6.535 16 C 0.026 3.974 17 N -0.677 5.677 18 C 0.067 3.933 19 C -0.088 4.088 20 H 0.082 0.918 21 C -0.127 4.127 22 C 0.036 3.964 23 N -0.529 5.529 24 C 0.017 3.983 25 C 0.053 3.947 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.009 0.991 29 H -0.011 1.011 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.368 0.632 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.341 0.659 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.089 0.911 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -23.562 11.011 26.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.339 6.339 16 C -0.104 4.104 17 N -0.307 5.307 18 C -0.063 4.063 19 C -0.108 4.108 20 H 0.101 0.899 21 C -0.166 4.166 22 C -0.092 4.092 23 N -0.253 5.253 24 C -0.132 4.132 25 C -0.075 4.075 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.006 0.994 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.214 0.786 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.159 0.841 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.045 0.955 47 H 0.108 0.892 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.211 -24.126 9.858 26.063 hybrid contribution 0.291 1.812 1.272 2.233 sum 0.080 -22.314 11.129 24.936 Atomic orbital electron populations 1.22248 0.89078 0.99126 1.00716 1.62030 1.06759 1.17434 1.39153 1.19747 0.95274 0.81596 0.96612 1.21174 1.34610 0.96838 1.01674 0.91782 1.25005 0.95331 0.97384 0.97062 1.69965 1.38543 1.11407 1.34155 0.86483 0.77933 0.79193 0.83741 1.20780 1.21281 1.19693 1.22724 1.00531 0.93961 0.93301 1.21878 0.97540 0.90601 0.84353 0.88983 1.86590 1.22851 1.83890 1.40545 1.22727 1.01479 0.88164 0.97996 1.60356 1.23722 1.08586 1.38081 1.21997 1.00674 0.92226 0.91371 1.22060 1.00668 0.93387 0.94661 0.89937 1.22440 1.01296 0.95254 0.97602 1.22844 0.99675 0.98202 0.88521 1.64742 1.42050 1.11548 1.06946 1.22496 0.91396 0.98866 1.00458 1.23217 0.98646 0.85909 0.99697 0.90781 0.93539 0.97302 0.99356 0.95371 0.92983 0.91159 0.95622 0.78622 0.90788 0.94749 0.84055 0.91164 0.95263 0.91370 0.90961 0.93937 0.90535 0.91569 0.91098 0.95487 0.89236 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.17 60.07 0.55 1.29 16 2 N -0.53 -11.59 4.70 -244.37 -1.15 -12.74 16 3 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 4 C -0.50 -14.41 8.51 -34.44 -0.29 -14.71 16 5 H 0.06 1.83 7.10 -52.48 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.02 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.12 1.66 3.13 -26.73 -0.08 1.58 16 14 H 0.09 1.36 6.26 -51.93 -0.33 1.03 16 15 O -0.54 -8.49 13.15 -35.23 -0.46 -8.95 16 16 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 17 N -0.68 -6.94 6.24 -113.77 -0.71 -7.65 16 18 C 0.07 0.58 5.00 -3.82 -0.02 0.56 16 19 C -0.09 -0.73 3.22 -88.76 -0.29 -1.01 16 20 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.13 -0.90 6.51 -25.37 -0.17 -1.06 16 22 C 0.04 0.27 6.70 -2.75 -0.02 0.25 16 23 N -0.53 -4.81 5.55 -238.54 -1.32 -6.13 16 24 C 0.02 0.13 9.40 60.06 0.56 0.69 16 25 C 0.05 0.49 5.90 -1.79 -0.01 0.48 16 26 H 0.07 1.58 6.86 -51.93 -0.36 1.23 16 27 H 0.05 0.80 6.21 -51.93 -0.32 0.47 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 30 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.37 4.91 9.05 45.56 0.41 5.32 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.34 3.42 8.73 -39.29 -0.34 3.07 16 38 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.04 0.30 7.73 -51.93 -0.40 -0.10 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.03 0.20 8.01 -51.93 -0.42 -0.22 16 47 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 48 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -31.34 376.94 -10.55 -41.90 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.39 Total: 2.02 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.75 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -2.45 Total: -52.79 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.46 Total: -8.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.34 -10.55 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336734628.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.461 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds