Wall clock time and date at job start Tue Mar 31 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99974 * 2 1 4 4 C 1.53001 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.89148 * 51.10973 * 4 3 2 6 6 C 1.55157 * 111.00540 * 174.99769 * 4 3 2 7 7 C 1.54324 * 102.94526 * 153.57173 * 6 4 3 8 8 N 1.47027 * 107.26976 * 337.80776 * 7 6 4 9 9 C 1.34771 * 125.64926 * 178.90313 * 8 7 6 10 10 O 1.21592 * 120.00201 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00213 * 0.02685 * 9 8 7 12 12 C 1.46500 * 120.00259 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.46924 * 179.97438 * 12 11 9 14 14 O 1.21295 * 120.00238 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00076 * 180.02562 * 13 12 11 16 16 C 1.37105 * 120.00244 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99708 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00017 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99901 * 359.71836 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72227 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72075 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72111 * 20 18 16 24 24 C 1.47426 * 108.70189 * 359.16546 * 8 7 6 25 25 H 1.08997 * 109.46874 * 60.00386 * 1 2 3 26 26 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47219 * 300.00407 * 1 2 3 28 28 H 1.08995 * 109.47633 * 59.99598 * 3 2 1 29 29 H 1.09002 * 109.46532 * 299.99501 * 3 2 1 30 30 H 1.09001 * 110.71922 * 35.21045 * 6 4 3 31 31 H 1.08995 * 110.87106 * 272.00757 * 6 4 3 32 32 H 1.08996 * 109.88351 * 218.39302 * 7 6 4 33 33 H 1.08992 * 109.88048 * 97.22031 * 7 6 4 34 34 H 0.97005 * 119.99563 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.46977 * 60.00015 * 12 11 9 36 36 H 1.08993 * 109.47026 * 299.99632 * 12 11 9 37 37 H 0.97004 * 119.99652 * 359.97438 * 15 13 12 38 38 H 0.97000 * 120.00371 * 0.28325 * 19 18 16 39 39 H 1.09003 * 110.36409 * 142.73847 * 24 8 7 40 40 H 1.09000 * 110.36636 * 265.06416 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8721 0.5168 -0.7935 6 6 4.2038 2.5792 -0.1270 7 6 5.5730 2.3693 0.5532 8 7 5.4413 1.2130 1.4518 9 6 6.4246 0.6943 2.2136 10 8 6.2013 -0.2685 2.9219 11 7 7.6556 1.2426 2.1903 12 6 8.7246 0.6783 3.0180 13 6 9.9911 1.4679 2.8095 14 8 10.0001 2.4091 2.0445 15 7 11.1142 1.1277 3.4724 16 6 12.2664 1.8464 3.2832 17 1 12.2741 2.6849 2.6026 18 6 13.4240 1.4959 3.9670 19 7 13.4131 0.4790 4.7993 20 14 14.9940 2.4746 3.7087 21 1 15.7737 1.8749 2.5961 22 1 14.6516 3.8798 3.3719 23 1 15.8048 2.4472 4.9524 24 6 4.0572 0.7111 1.3765 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8901 30 1 3.6224 3.3348 0.4016 31 1 4.3314 2.8553 -1.1736 32 1 5.8416 3.2561 1.1273 33 1 6.3343 2.1683 -0.2004 34 1 7.8339 2.0104 1.6250 35 1 8.8937 -0.3605 2.7345 36 1 8.4350 0.7260 4.0677 37 1 11.1071 0.3748 4.0840 38 1 12.5980 -0.0295 4.9332 39 1 4.0447 -0.3773 1.4336 40 1 3.4539 1.1407 2.1763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342556369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:08 Heat of formation + Delta-G solvation = -136.740027 kcal Electronic energy + Delta-G solvation = -22126.513944 eV Core-core repulsion = 18554.346758 eV Total energy + Delta-G solvation = -3572.167186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54664 -40.39266 -39.34598 -38.04627 -36.63309 -35.44439 -33.49311 -33.16373 -30.49245 -29.41853 -27.73055 -26.53174 -25.70113 -23.93385 -21.86198 -21.46010 -21.14254 -20.10453 -19.53818 -18.00270 -17.63610 -17.30668 -17.13689 -16.85433 -16.52600 -16.38908 -15.85328 -15.62981 -15.44749 -15.14271 -14.61390 -14.34180 -14.19316 -13.93891 -13.59749 -13.39574 -13.24990 -12.98640 -12.79982 -12.40822 -12.21397 -11.96755 -11.91545 -11.88567 -11.64252 -11.59319 -11.50590 -10.64285 -10.58257 -10.42095 -10.19158 -9.62241 -8.97476 -6.13374 1.38603 1.46265 1.56105 1.83388 1.86438 1.98156 2.38987 2.71031 2.84647 3.04653 3.12244 3.53684 3.55619 3.93065 3.96116 4.20253 4.27658 4.31809 4.32478 4.33982 4.48548 4.56788 4.59217 4.64914 4.73718 4.80476 4.89265 4.90569 5.01028 5.18102 5.20244 5.29229 5.57265 5.87519 5.92098 6.26783 6.45074 6.60467 6.81121 7.30722 7.38741 7.72471 8.49176 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.051897 B = 0.002568 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.405871 B =10901.857681 C =11362.478990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.074 3.926 4 C -0.093 4.093 5 H 0.088 0.912 6 C -0.106 4.106 7 C 0.088 3.912 8 N -0.638 5.638 9 C 0.718 3.282 10 O -0.632 6.632 11 N -0.722 5.722 12 C 0.141 3.859 13 C 0.439 3.561 14 O -0.617 6.617 15 N -0.572 5.572 16 C -0.411 4.411 17 H 0.082 0.918 18 C -0.041 4.041 19 N -0.912 5.912 20 Si 1.139 2.861 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.274 1.274 24 C 0.131 3.869 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.387 0.613 38 H 0.261 0.739 39 H 0.057 0.943 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.615 3.837 -10.543 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.003 4.003 4 C -0.112 4.112 5 H 0.106 0.894 6 C -0.143 4.143 7 C -0.034 4.034 8 N -0.375 5.375 9 C 0.419 3.581 10 O -0.514 6.514 11 N -0.380 5.380 12 C 0.012 3.988 13 C 0.226 3.774 14 O -0.504 6.504 15 N -0.210 5.210 16 C -0.540 4.540 17 H 0.100 0.900 18 C -0.240 4.240 19 N -0.550 5.550 20 Si 0.958 3.042 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.222 0.778 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.977 3.696 -10.017 24.433 hybrid contribution -1.566 -0.346 -0.081 1.606 sum -23.543 3.349 -10.098 25.836 Atomic orbital electron populations 1.22897 0.79475 1.03579 1.01006 1.87876 1.21469 1.29063 1.95659 1.22525 0.90993 0.84579 1.02160 1.22276 0.94541 0.98376 0.96035 0.89411 1.22614 0.92832 0.95756 1.03148 1.22308 1.00427 0.87888 0.92817 1.47591 1.10410 1.34018 1.45498 1.15483 0.80136 0.81976 0.80458 1.90876 1.82736 1.30818 1.47013 1.44678 1.08109 1.36372 1.48842 1.20604 0.84492 0.97125 0.96550 1.20319 0.85522 0.87224 0.84304 1.90469 1.85467 1.33032 1.41466 1.41892 1.09300 1.29916 1.39871 1.20617 0.89579 1.14841 1.28973 0.90027 1.27961 1.04965 0.98343 0.92697 1.70937 1.30688 1.18723 1.34679 0.82560 0.70289 0.74158 0.77184 1.19496 1.19858 1.19920 1.22153 0.79675 0.99214 0.98153 0.92649 0.89244 0.93238 0.91836 0.90345 0.88278 0.86984 0.90729 0.91187 0.75235 0.89011 0.88922 0.77836 0.92829 0.92483 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.11 10.67 -148.98 -1.59 -8.70 16 3 C 0.07 0.87 5.39 71.98 0.39 1.26 16 4 C -0.09 -1.39 3.28 -9.48 -0.03 -1.42 16 5 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 6 C -0.11 -1.16 6.42 31.78 0.20 -0.95 16 7 C 0.09 1.65 6.15 86.73 0.53 2.18 16 8 N -0.64 -17.19 3.33 -830.18 -2.76 -19.95 16 9 C 0.72 25.53 8.49 179.06 1.52 27.05 16 10 O -0.63 -26.90 16.60 -4.01 -0.07 -26.97 16 11 N -0.72 -25.80 5.49 -482.31 -2.65 -28.44 16 12 C 0.14 5.40 6.15 85.63 0.53 5.93 16 13 C 0.44 20.66 7.85 87.66 0.69 21.35 16 14 O -0.62 -32.38 15.24 -3.08 -0.05 -32.43 16 15 N -0.57 -28.88 5.28 -306.98 -1.62 -30.51 16 16 C -0.41 -22.96 9.68 84.04 0.81 -22.15 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.04 -2.18 5.50 84.92 0.47 -1.71 16 19 N -0.91 -50.57 13.68 21.66 0.30 -50.27 16 20 Si 1.14 47.41 29.92 68.60 2.05 49.47 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 C 0.13 2.99 6.34 86.78 0.55 3.54 16 25 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.63 7.96 -2.39 -0.02 0.61 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.76 8.04 -2.39 -0.02 0.74 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.41 14.24 6.42 -92.70 -0.60 13.64 16 35 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.39 18.18 6.73 -92.71 -0.62 17.56 16 38 H 0.26 14.07 6.78 -92.71 -0.63 13.44 16 39 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 40 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 Total: -1.00 -74.58 338.25 0.51 -74.07 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.02 Total: 37.12 kcal Atomic # 6 Polarization: 29.69 SS G_CDS: 6.91 Total: 36.60 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -6.74 Total: -129.17 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: -1.70 Total: -68.09 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.05 Total: 49.47 kcal Total: -74.58 0.51 -74.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342556369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.667 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds