Wall clock time and date at job start Tue Mar 31 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00073 * 2 1 4 4 H 1.09005 * 109.46942 * 29.99807 * 3 2 1 5 5 C 1.52993 * 109.47180 * 269.99923 * 3 2 1 6 6 C 1.50701 * 109.47446 * 149.99710 * 3 2 1 7 7 O 1.21279 * 119.99864 * 4.99632 * 6 3 2 8 8 N 1.34772 * 120.00213 * 184.73028 * 6 3 2 9 9 C 1.46497 * 120.00084 * 180.27779 * 8 6 3 10 10 C 1.53005 * 109.47223 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.47104 * 179.97438 * 10 9 8 12 12 C 1.46902 * 111.00366 * 294.30296 * 11 10 9 13 13 C 1.53239 * 109.34345 * 172.74718 * 12 11 10 14 14 N 1.47082 * 108.52084 * 53.82706 * 13 12 11 15 15 C 1.36938 * 120.87814 * 128.83626 * 14 13 12 16 16 H 1.07999 * 120.00239 * 333.49025 * 15 14 13 17 17 C 1.38816 * 119.99747 * 153.48853 * 15 14 13 18 18 N 1.31611 * 120.00062 * 159.43968 * 17 15 14 19 19 Si 1.86803 * 119.99814 * 339.44098 * 17 15 14 20 20 H 1.48504 * 109.46988 * 91.97930 * 19 17 15 21 21 H 1.48500 * 109.47113 * 211.97323 * 19 17 15 22 22 H 1.48497 * 109.47179 * 331.98010 * 19 17 15 23 23 C 1.47080 * 118.23684 * 308.81618 * 14 13 12 24 24 C 1.46895 * 111.00086 * 169.99738 * 11 10 9 25 25 H 1.08996 * 109.46752 * 59.99918 * 1 2 3 26 26 H 1.08995 * 109.46895 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47245 * 300.00423 * 1 2 3 28 28 H 1.09005 * 109.47088 * 299.99795 * 5 3 2 29 29 H 1.08994 * 109.47340 * 59.99804 * 5 3 2 30 30 H 1.09002 * 109.47057 * 179.97438 * 5 3 2 31 31 H 0.97001 * 120.00195 * 0.26615 * 8 6 3 32 32 H 1.09006 * 109.46881 * 299.99419 * 9 8 6 33 33 H 1.09005 * 109.47744 * 59.99251 * 9 8 6 34 34 H 1.08998 * 109.47046 * 299.99406 * 10 9 8 35 35 H 1.08993 * 109.46979 * 59.99633 * 10 9 8 36 36 H 1.09004 * 109.48991 * 292.70559 * 12 11 10 37 37 H 1.08998 * 109.49006 * 52.78509 * 12 11 10 38 38 H 1.08996 * 109.62463 * 294.12009 * 13 12 11 39 39 H 1.08999 * 109.62709 * 173.53874 * 13 12 11 40 40 H 0.96999 * 120.00632 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.62624 * 291.47343 * 23 14 13 42 42 H 1.08998 * 109.78543 * 170.98951 * 23 14 13 43 43 H 1.09001 * 109.49377 * 307.21504 * 24 11 10 44 44 H 1.09005 * 109.49252 * 67.29543 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4424 6 6 3.3386 1.2640 0.7105 7 8 3.7896 0.2046 1.0915 8 7 4.0280 2.4034 0.9176 9 6 5.3221 2.3623 1.6028 10 6 5.8892 3.7795 1.7073 11 7 7.1866 3.7384 2.3950 12 6 7.0287 3.3136 3.7923 13 6 8.4115 3.1088 4.4200 14 7 9.1980 4.3369 4.2284 15 6 9.8298 4.9386 5.2838 16 1 9.4476 4.8114 6.2859 17 6 10.9616 5.7122 5.0657 18 7 11.3340 6.6011 5.9620 19 14 11.9562 5.4916 3.4999 20 1 11.4656 6.4366 2.4646 21 1 13.3885 5.7649 3.7806 22 1 11.8048 4.0981 3.0095 23 6 9.2882 4.9011 2.8731 24 6 7.8708 5.0352 2.3063 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.8830 1.0774 -1.9563 29 1 1.2570 1.8014 -1.9563 30 1 2.6607 2.7673 -1.4424 31 1 3.6673 3.2507 0.6128 32 1 5.1908 1.9485 2.6027 33 1 6.0126 1.7357 1.0382 34 1 6.0206 4.1929 0.7073 35 1 5.1989 4.4063 2.2717 36 1 6.4876 4.0805 4.3466 37 1 6.4713 2.3775 3.8271 38 1 8.9140 2.2727 3.9339 39 1 8.3036 2.9056 5.4854 40 1 12.1251 7.1414 5.8099 41 1 9.8750 4.2371 2.2385 42 1 9.7611 5.8823 2.9127 43 1 7.9242 5.3478 1.2635 44 1 7.3180 5.7782 2.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490484967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:08 Heat of formation + Delta-G solvation = -69.349623 kcal Electronic energy + Delta-G solvation = -22896.726185 eV Core-core repulsion = 19463.314360 eV Total energy + Delta-G solvation = -3433.411824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08290 -39.94990 -38.60773 -36.94786 -35.49320 -33.69435 -32.69970 -32.02550 -30.26344 -27.74396 -27.63192 -25.39258 -24.92360 -24.05000 -22.80310 -21.53424 -21.00845 -18.84955 -18.50336 -17.99743 -17.35900 -16.95254 -16.67489 -16.22366 -15.95694 -15.85009 -15.74789 -15.57276 -15.28998 -14.92269 -14.48110 -14.35648 -14.23643 -13.85974 -13.58741 -13.41918 -13.29821 -13.01992 -12.76446 -12.58596 -12.50390 -12.20933 -12.10949 -12.10329 -11.77610 -11.64490 -11.44563 -11.07674 -10.73883 -10.54249 -10.14660 -9.40908 -8.91517 -8.17613 -5.49378 1.28900 1.42448 1.52132 1.53471 1.78695 2.40844 2.83738 3.05642 3.13850 3.34700 3.67429 3.83599 3.93262 4.03686 4.07485 4.15500 4.21808 4.42345 4.44756 4.46174 4.50224 4.55667 4.57850 4.69204 4.69924 4.79223 4.81300 4.87240 4.89083 4.93889 5.00798 5.03300 5.21264 5.27297 5.33516 5.81362 6.04101 6.06388 6.07924 6.17463 6.53338 6.88490 7.20324 7.59695 8.02175 9.02262 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.046173 B = 0.002793 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.273558 B =10023.492220 C =10251.873769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.400 6.400 3 C 0.071 3.929 4 H 0.119 0.881 5 C -0.165 4.165 6 C 0.506 3.494 7 O -0.577 6.577 8 N -0.708 5.708 9 C 0.130 3.870 10 C 0.054 3.946 11 N -0.541 5.541 12 C 0.050 3.950 13 C 0.145 3.855 14 N -0.624 5.624 15 C -0.250 4.250 16 H 0.052 0.948 17 C -0.036 4.036 18 N -0.957 5.957 19 Si 0.950 3.050 20 H -0.267 1.267 21 H -0.311 1.311 22 H -0.267 1.267 23 C 0.122 3.878 24 C 0.057 3.943 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.419 0.581 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.092 0.908 38 H 0.033 0.967 39 H 0.059 0.941 40 H 0.262 0.738 41 H 0.033 0.967 42 H 0.056 0.944 43 H 0.101 0.899 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.768 -5.754 -17.578 30.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.010 3.990 4 H 0.136 0.864 5 C -0.223 4.223 6 C 0.293 3.707 7 O -0.456 6.456 8 N -0.363 5.363 9 C 0.005 3.995 10 C -0.074 4.074 11 N -0.266 5.266 12 C -0.079 4.079 13 C 0.020 3.980 14 N -0.349 5.349 15 C -0.379 4.379 16 H 0.069 0.931 17 C -0.231 4.231 18 N -0.603 5.603 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.240 1.240 22 H -0.192 1.192 23 C -0.003 4.003 24 C -0.073 4.073 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.257 0.743 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.946 -6.924 -17.484 29.667 hybrid contribution 0.288 1.102 0.336 1.188 sum -22.657 -5.822 -17.148 29.005 Atomic orbital electron populations 1.23084 0.78609 1.04112 1.01535 1.88018 1.21970 1.26711 1.95198 1.22090 0.91886 0.86983 0.98017 0.86366 1.22236 1.04314 1.02565 0.93157 1.21122 0.87244 0.83492 0.78854 1.90721 1.70784 1.31911 1.52170 1.45662 1.20970 1.09921 1.59775 1.21145 0.83835 0.97489 0.96995 1.22198 0.89466 0.95127 1.00629 1.61739 1.20809 1.29212 1.14845 1.22533 0.97256 1.00206 0.87927 1.21167 0.90722 0.87484 0.98632 1.44569 1.59033 1.26908 1.04426 1.18874 1.05764 1.24820 0.88463 0.93050 1.25897 0.98508 0.98010 1.00689 1.69958 1.27458 1.24048 1.38870 0.85883 0.76953 0.78959 0.80364 1.19339 1.24022 1.19194 1.21489 0.96399 0.96981 0.85456 1.22441 0.94413 0.89164 1.01234 0.91662 0.88900 0.92787 0.93010 0.89260 0.88545 0.74339 0.92625 0.92081 0.87971 0.93175 0.95447 0.88964 0.94887 0.92222 0.92889 0.94864 0.92573 0.88078 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -7.96 9.89 -129.99 -1.29 -9.25 16 3 C 0.07 1.00 3.13 29.85 0.09 1.10 16 4 H 0.12 0.86 7.79 -2.38 -0.02 0.84 16 5 C -0.17 -1.46 9.48 71.98 0.68 -0.77 16 6 C 0.51 11.04 7.18 87.66 0.63 11.67 16 7 O -0.58 -19.49 16.51 15.96 0.26 -19.23 16 8 N -0.71 -11.19 5.51 -463.05 -2.55 -13.75 16 9 C 0.13 2.73 5.61 86.38 0.48 3.21 16 10 C 0.05 1.05 5.08 86.31 0.44 1.49 16 11 N -0.54 -15.55 4.63 -895.26 -4.14 -19.69 16 12 C 0.05 1.58 5.46 86.38 0.47 2.05 16 13 C 0.15 5.79 6.69 86.35 0.58 6.36 16 14 N -0.62 -29.98 2.82 -698.13 -1.97 -31.94 16 15 C -0.25 -14.39 10.08 84.03 0.85 -13.55 16 16 H 0.05 3.23 8.05 -2.91 -0.02 3.21 16 17 C -0.04 -2.15 5.24 84.86 0.44 -1.70 16 18 N -0.96 -60.51 13.97 21.65 0.30 -60.21 16 19 Si 0.95 47.00 24.31 68.60 1.67 48.67 16 20 H -0.27 -12.16 6.58 99.48 0.65 -11.51 16 21 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 22 H -0.27 -12.97 6.61 99.48 0.66 -12.31 16 23 C 0.12 5.14 4.35 86.35 0.38 5.51 16 24 C 0.06 1.80 5.62 86.38 0.49 2.29 16 25 H 0.06 0.38 7.87 -2.39 -0.02 0.36 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.44 8.08 -2.39 -0.02 0.42 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.09 0.47 7.87 -2.39 -0.02 0.45 16 30 H 0.10 0.38 7.91 -2.39 -0.02 0.36 16 31 H 0.42 3.18 8.24 -92.71 -0.76 2.42 16 32 H 0.06 1.36 6.40 -2.38 -0.02 1.35 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.10 1.55 7.97 -2.39 -0.02 1.53 16 35 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 2.53 6.16 -2.39 -0.01 2.51 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 40 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.03 1.41 6.94 -2.39 -0.02 1.39 16 42 H 0.06 2.57 4.61 -2.39 -0.01 2.56 16 43 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 44 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -79.90 345.79 -0.85 -80.75 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.12 Total: 5.54 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.76 Total: 19.11 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -8.36 Total: -125.59 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.02 Total: -28.48 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Total: -79.90 -0.85 -80.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490484967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.399 kcal (2) G-P(sol) polarization free energy of solvation -79.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds