Wall clock time and date at job start Tue Mar 31 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46897 * 111.00173 * 2 1 4 4 C 1.52992 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46964 * 304.99488 * 4 3 2 6 6 O 1.42901 * 109.47660 * 64.99508 * 4 3 2 7 7 C 1.53000 * 109.47211 * 185.00204 * 4 3 2 8 8 N 1.46504 * 109.47289 * 179.97438 * 7 4 3 9 9 C 1.46497 * 119.99385 * 269.99523 * 8 7 4 10 10 C 1.34776 * 120.00224 * 89.99418 * 8 7 4 11 11 O 1.21585 * 119.99664 * 5.03510 * 10 8 7 12 12 N 1.34774 * 119.99907 * 185.03235 * 10 8 7 13 13 C 1.46496 * 120.00038 * 184.85129 * 12 10 8 14 14 C 1.52999 * 109.47458 * 185.15197 * 13 12 10 15 15 C 1.50702 * 115.54794 * 57.65814 * 14 13 12 16 16 H 1.07998 * 120.00247 * 269.35139 * 15 14 13 17 17 C 1.37880 * 119.99719 * 89.07792 * 15 14 13 18 18 N 1.31510 * 120.00052 * 171.41727 * 17 15 14 19 19 Si 1.86802 * 120.00029 * 351.41589 * 17 15 14 20 20 H 1.48491 * 109.47187 * 93.14149 * 19 17 15 21 21 H 1.48496 * 109.47169 * 213.14351 * 19 17 15 22 22 H 1.48509 * 109.47150 * 333.14087 * 19 17 15 23 23 C 1.52997 * 117.49890 * 203.33107 * 14 13 12 24 24 C 1.53001 * 117.49863 * 271.99448 * 14 13 12 25 25 H 1.09000 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46967 * 300.00555 * 1 2 3 27 27 H 1.09004 * 109.46621 * 60.00516 * 1 2 3 28 28 H 1.00899 * 110.99745 * 236.04430 * 2 1 3 29 29 H 1.09003 * 109.47126 * 59.99155 * 3 2 1 30 30 H 1.09005 * 109.46937 * 299.99855 * 3 2 1 31 31 H 0.96701 * 113.99484 * 59.99856 * 6 4 3 32 32 H 1.08994 * 109.47343 * 59.99118 * 7 4 3 33 33 H 1.09005 * 109.46572 * 299.99524 * 7 4 3 34 34 H 1.09002 * 109.47486 * 264.62142 * 9 8 7 35 35 H 1.09001 * 109.47513 * 24.62768 * 9 8 7 36 36 H 1.09005 * 109.46597 * 144.62474 * 9 8 7 37 37 H 0.97005 * 120.00121 * 4.84591 * 12 10 8 38 38 H 1.09005 * 109.47294 * 65.14543 * 13 12 10 39 39 H 1.09002 * 109.46928 * 305.15650 * 13 12 10 40 40 H 0.96998 * 120.00034 * 179.97438 * 18 17 15 41 41 H 1.09000 * 117.49920 * 214.99905 * 23 14 13 42 42 H 1.08997 * 117.50047 * 0.02562 * 23 14 13 43 43 H 1.08998 * 117.49803 * 359.97025 * 24 14 13 44 44 H 1.08994 * 117.49940 * 144.97066 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8728 0.7315 0.8410 6 8 3.9855 0.7488 -1.2219 7 6 4.0732 2.7534 0.1251 8 7 5.5377 2.7143 0.1251 9 6 6.2668 2.5843 1.3891 10 6 6.2141 2.7979 -1.0376 11 8 5.6148 2.9976 -2.0765 12 7 7.5547 2.6603 -1.0487 13 6 8.3009 2.8564 -2.2940 14 6 9.7753 2.5183 -2.0639 15 6 10.0521 1.1232 -1.5658 16 1 10.0930 0.9268 -0.5047 17 6 10.2476 0.0964 -2.4650 18 7 10.6543 -1.0803 -2.0413 19 14 9.9346 0.3766 -4.2852 20 1 11.2009 0.7775 -4.9492 21 1 9.4292 -0.8774 -4.8994 22 1 8.9249 1.4524 -4.4541 23 6 10.8002 3.1472 -3.0098 24 6 10.6878 3.6405 -1.5650 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8306 -0.5261 -0.7813 29 1 1.6459 1.8948 0.8899 30 1 1.6461 1.8947 -0.8900 31 1 3.7126 1.2307 -2.0146 32 1 3.7219 3.1972 1.0566 33 1 3.7254 3.3524 -0.7165 34 1 6.5584 3.5729 1.7438 35 1 5.6264 2.1065 2.1305 36 1 7.1583 1.9766 1.2333 37 1 8.0256 2.4314 -0.2320 38 1 8.2116 3.8954 -2.6114 39 1 7.8950 2.2042 -3.0673 40 1 10.7914 -1.8027 -2.6738 41 1 11.6748 2.5519 -3.2719 42 1 10.4243 3.8021 -3.7958 43 1 10.2379 4.6198 -1.4013 44 1 11.4881 3.3698 -0.8764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578645973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:43 Heat of formation + Delta-G solvation = -43.636783 kcal Electronic energy + Delta-G solvation = -23590.216725 eV Core-core repulsion = 20157.919893 eV Total energy + Delta-G solvation = -3432.296832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85802 -38.03117 -37.01552 -35.32113 -34.74657 -33.32850 -32.08175 -30.44494 -27.39367 -26.85552 -25.71085 -24.82584 -23.25366 -21.72766 -21.59266 -19.48764 -19.19201 -17.73288 -16.82173 -16.47271 -16.19299 -15.73430 -15.55424 -14.91531 -14.75534 -14.51851 -13.99193 -13.93032 -13.65697 -13.25985 -13.04236 -12.84828 -12.71765 -12.39999 -12.30126 -12.14200 -12.03417 -11.92253 -11.57463 -11.11480 -11.03934 -10.61484 -10.49655 -10.15551 -10.10406 -9.74391 -9.55297 -9.12995 -8.69966 -8.62276 -8.53419 -8.44521 -7.97633 -6.12254 -4.14923 2.99827 3.33291 3.43686 3.49809 3.72640 4.00773 4.39431 4.45214 4.55303 4.79762 4.95068 4.98100 5.08840 5.15403 5.16479 5.19889 5.23718 5.28023 5.42368 5.53198 5.60578 5.66624 5.73098 5.82629 6.04358 6.07403 6.11724 6.29907 6.45878 6.50133 6.64631 6.74036 6.78619 7.05327 7.13286 7.14365 7.26997 7.39404 7.73233 7.83029 8.44549 8.56250 8.87769 9.16255 9.52314 10.99210 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004328 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.690105 B = 6468.189704 C = 7084.105880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.029 3.971 4 C 0.089 3.911 5 H 0.104 0.896 6 O -0.546 6.546 7 C 0.105 3.895 8 N -0.632 5.632 9 C 0.081 3.919 10 C 0.711 3.289 11 O -0.605 6.605 12 N -0.716 5.716 13 C 0.171 3.829 14 C -0.015 4.015 15 C -0.490 4.490 16 H 0.076 0.924 17 C 0.083 3.917 18 N -0.894 5.894 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.293 1.293 22 H -0.254 1.254 23 C -0.191 4.191 24 C -0.180 4.180 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.351 0.649 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.375 0.625 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.400 0.600 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.265 0.735 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 7.634 6.168 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.102 4.102 4 C 0.028 3.972 5 H 0.122 0.878 6 O -0.351 6.351 7 C -0.020 4.020 8 N -0.370 5.370 9 C -0.063 4.063 10 C 0.412 3.588 11 O -0.485 6.485 12 N -0.370 5.370 13 C 0.047 3.953 14 C -0.016 4.016 15 C -0.527 4.527 16 H 0.094 0.906 17 C -0.120 4.120 18 N -0.530 5.530 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.179 1.179 23 C -0.229 4.229 24 C -0.217 4.217 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.169 0.831 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.223 0.777 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.189 7.100 6.441 17.961 hybrid contribution -0.346 0.517 -1.760 1.867 sum -15.535 7.617 4.681 17.924 Atomic orbital electron populations 1.22200 0.87999 1.01879 1.00170 1.60322 1.07369 1.13711 1.50950 1.22650 0.96064 0.90371 1.01100 1.22439 0.90936 0.94663 0.89169 0.87784 1.86649 1.78575 1.54709 1.15176 1.21886 0.79976 0.96931 1.03188 1.46743 1.05488 1.79007 1.05727 1.21702 0.97581 1.01225 0.85762 1.15794 0.82148 0.77685 0.83133 1.90791 1.68427 1.58269 1.31000 1.45066 1.04471 1.73599 1.13875 1.21039 0.91288 0.97960 0.85043 1.19610 0.87298 0.94664 1.00055 1.20113 1.49484 0.88472 0.94648 0.90581 1.24926 0.93367 0.94837 0.98893 1.69901 1.44755 1.02953 1.35398 0.86917 0.79239 0.77960 0.85553 1.20524 1.21992 1.17858 1.22921 1.03134 1.04273 0.92584 1.22853 1.04277 0.97734 0.96832 0.91405 0.91862 0.96179 0.83057 0.90283 0.94840 0.77739 0.90181 0.89674 0.92969 0.91133 0.90980 0.76403 0.94501 0.91569 0.92535 0.89141 0.90812 0.90988 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.70 60.07 0.64 0.87 16 2 N -0.69 -7.16 6.86 -121.13 -0.83 -7.99 16 3 C 0.03 0.28 5.36 -3.83 -0.02 0.25 16 4 C 0.09 1.06 3.48 -26.73 -0.09 0.97 16 5 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 6 O -0.55 -8.43 11.78 -37.03 -0.44 -8.86 16 7 C 0.11 1.23 5.15 -4.04 -0.02 1.21 16 8 N -0.63 -9.21 2.83 -187.35 -0.53 -9.74 16 9 C 0.08 0.94 10.23 59.85 0.61 1.55 16 10 C 0.71 13.53 7.70 -86.92 -0.67 12.87 16 11 O -0.60 -13.06 15.02 3.49 0.05 -13.01 16 12 N -0.72 -14.13 5.25 -65.23 -0.34 -14.47 16 13 C 0.17 3.71 5.31 -4.04 -0.02 3.69 16 14 C -0.01 -0.34 0.93 -155.66 -0.14 -0.48 16 15 C -0.49 -13.05 8.94 -34.44 -0.31 -13.36 16 16 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 17 C 0.08 2.34 5.46 -17.82 -0.10 2.24 16 18 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 19 Si 0.88 21.87 25.22 -169.99 -4.29 17.59 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 22 H -0.25 -6.16 5.36 56.52 0.30 -5.86 16 23 C -0.19 -3.98 7.77 -26.69 -0.21 -4.18 16 24 C -0.18 -3.49 9.94 -26.69 -0.27 -3.75 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.35 3.85 8.37 -39.29 -0.33 3.52 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.37 5.37 8.62 45.56 0.39 5.76 16 32 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.08 1.08 7.36 -51.93 -0.38 0.70 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.07 0.93 6.39 -51.93 -0.33 0.60 16 37 H 0.40 7.44 5.98 -40.82 -0.24 7.19 16 38 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 39 H 0.07 1.62 6.04 -51.93 -0.31 1.30 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.09 1.98 7.47 -51.93 -0.39 1.59 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -32.52 353.67 -7.60 -40.12 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.74 Total: 15.21 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.59 Total: 1.87 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.93 Total: -58.24 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.38 Total: -21.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.29 Total: 17.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.52 -7.60 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578645973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.519 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds