Wall clock time and date at job start Tue Mar 31 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46897 * 111.00173 * 2 1 4 4 C 1.52992 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46964 * 304.99488 * 4 3 2 6 6 O 1.42901 * 109.47660 * 64.99508 * 4 3 2 7 7 C 1.53000 * 109.47211 * 185.00204 * 4 3 2 8 8 N 1.46504 * 109.47289 * 179.97438 * 7 4 3 9 9 C 1.46497 * 119.99385 * 269.99523 * 8 7 4 10 10 C 1.34776 * 120.00224 * 89.99418 * 8 7 4 11 11 O 1.21585 * 119.99664 * 5.03510 * 10 8 7 12 12 N 1.34774 * 119.99907 * 185.03235 * 10 8 7 13 13 C 1.46496 * 120.00038 * 184.85129 * 12 10 8 14 14 C 1.52999 * 109.47458 * 185.15197 * 13 12 10 15 15 C 1.50702 * 115.54794 * 57.65814 * 14 13 12 16 16 H 1.07998 * 120.00247 * 269.35139 * 15 14 13 17 17 C 1.37880 * 119.99719 * 89.07792 * 15 14 13 18 18 N 1.31510 * 120.00052 * 171.41727 * 17 15 14 19 19 Si 1.86802 * 120.00029 * 351.41589 * 17 15 14 20 20 H 1.48491 * 109.47187 * 93.14149 * 19 17 15 21 21 H 1.48496 * 109.47169 * 213.14351 * 19 17 15 22 22 H 1.48509 * 109.47150 * 333.14087 * 19 17 15 23 23 C 1.52997 * 117.49890 * 203.33107 * 14 13 12 24 24 C 1.53001 * 117.49863 * 271.99448 * 14 13 12 25 25 H 1.09000 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46967 * 300.00555 * 1 2 3 27 27 H 1.09004 * 109.46621 * 60.00516 * 1 2 3 28 28 H 1.00899 * 110.99745 * 236.04430 * 2 1 3 29 29 H 1.09003 * 109.47126 * 59.99155 * 3 2 1 30 30 H 1.09005 * 109.46937 * 299.99855 * 3 2 1 31 31 H 0.96701 * 113.99484 * 59.99856 * 6 4 3 32 32 H 1.08994 * 109.47343 * 59.99118 * 7 4 3 33 33 H 1.09005 * 109.46572 * 299.99524 * 7 4 3 34 34 H 1.09002 * 109.47486 * 264.62142 * 9 8 7 35 35 H 1.09001 * 109.47513 * 24.62768 * 9 8 7 36 36 H 1.09005 * 109.46597 * 144.62474 * 9 8 7 37 37 H 0.97005 * 120.00121 * 4.84591 * 12 10 8 38 38 H 1.09005 * 109.47294 * 65.14543 * 13 12 10 39 39 H 1.09002 * 109.46928 * 305.15650 * 13 12 10 40 40 H 0.96998 * 120.00034 * 179.97438 * 18 17 15 41 41 H 1.09000 * 117.49920 * 214.99905 * 23 14 13 42 42 H 1.08997 * 117.50047 * 0.02562 * 23 14 13 43 43 H 1.08998 * 117.49803 * 359.97025 * 24 14 13 44 44 H 1.08994 * 117.49940 * 144.97066 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8728 0.7315 0.8410 6 8 3.9855 0.7488 -1.2219 7 6 4.0732 2.7534 0.1251 8 7 5.5377 2.7143 0.1251 9 6 6.2668 2.5843 1.3891 10 6 6.2141 2.7979 -1.0376 11 8 5.6148 2.9976 -2.0765 12 7 7.5547 2.6603 -1.0487 13 6 8.3009 2.8564 -2.2940 14 6 9.7753 2.5183 -2.0639 15 6 10.0521 1.1232 -1.5658 16 1 10.0930 0.9268 -0.5047 17 6 10.2476 0.0964 -2.4650 18 7 10.6543 -1.0803 -2.0413 19 14 9.9346 0.3766 -4.2852 20 1 11.2009 0.7775 -4.9492 21 1 9.4292 -0.8774 -4.8994 22 1 8.9249 1.4524 -4.4541 23 6 10.8002 3.1472 -3.0098 24 6 10.6878 3.6405 -1.5650 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8306 -0.5261 -0.7813 29 1 1.6459 1.8948 0.8899 30 1 1.6461 1.8947 -0.8900 31 1 3.7126 1.2307 -2.0146 32 1 3.7219 3.1972 1.0566 33 1 3.7254 3.3524 -0.7165 34 1 6.5584 3.5729 1.7438 35 1 5.6264 2.1065 2.1305 36 1 7.1583 1.9766 1.2333 37 1 8.0256 2.4314 -0.2320 38 1 8.2116 3.8954 -2.6114 39 1 7.8950 2.2042 -3.0673 40 1 10.7914 -1.8027 -2.6738 41 1 11.6748 2.5519 -3.2719 42 1 10.4243 3.8021 -3.7958 43 1 10.2379 4.6198 -1.4013 44 1 11.4881 3.3698 -0.8764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578645973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:42 Heat of formation + Delta-G solvation = -70.701074 kcal Electronic energy + Delta-G solvation = -23591.390321 eV Core-core repulsion = 20157.919893 eV Total energy + Delta-G solvation = -3433.470428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19849 -39.23351 -38.55004 -36.36378 -35.84813 -34.86826 -34.19259 -31.43630 -28.58051 -28.13786 -27.39057 -26.15031 -24.17549 -23.28361 -22.61245 -21.16865 -20.67647 -19.16774 -18.22224 -17.85138 -17.26957 -17.08286 -16.81652 -16.65576 -15.96394 -15.53537 -15.39424 -15.05454 -14.78911 -14.73871 -14.64177 -14.36340 -13.99597 -13.74416 -13.64776 -13.24916 -13.09110 -12.96188 -12.63081 -12.53976 -12.50776 -12.16071 -12.02646 -11.94899 -11.64055 -11.25638 -11.08192 -10.90591 -10.64541 -10.35105 -9.91270 -9.45327 -9.29692 -8.29922 -6.33464 1.32814 1.39713 1.50157 1.77505 2.30741 2.37300 2.98355 3.06433 3.21680 3.40635 3.57718 3.94805 4.06997 4.08997 4.18335 4.34385 4.35385 4.40548 4.43470 4.49359 4.56995 4.57880 4.65432 4.71413 4.78381 4.83475 4.89447 4.91476 5.00238 5.10900 5.13008 5.33531 5.51891 5.59044 5.71282 5.75683 6.00764 6.04723 6.29345 6.32663 6.73306 6.76603 7.13554 7.36201 7.71103 8.85012 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004328 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.690105 B = 6468.189704 C = 7084.105880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.707 5.707 3 C 0.038 3.962 4 C 0.091 3.909 5 H 0.096 0.904 6 O -0.574 6.574 7 C 0.105 3.895 8 N -0.627 5.627 9 C 0.076 3.924 10 C 0.702 3.298 11 O -0.636 6.636 12 N -0.721 5.721 13 C 0.182 3.818 14 C -0.040 4.040 15 C -0.476 4.476 16 H 0.044 0.956 17 C 0.030 3.970 18 N -0.943 5.943 19 Si 0.924 3.076 20 H -0.265 1.265 21 H -0.304 1.304 22 H -0.242 1.242 23 C -0.190 4.190 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.024 0.976 28 H 0.343 0.657 29 H 0.100 0.900 30 H 0.036 0.964 31 H 0.376 0.624 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.403 0.597 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.350 9.959 6.838 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.338 5.338 3 C -0.092 4.092 4 C 0.030 3.970 5 H 0.114 0.886 6 O -0.380 6.380 7 C -0.019 4.019 8 N -0.364 5.364 9 C -0.066 4.066 10 C 0.404 3.596 11 O -0.518 6.518 12 N -0.375 5.375 13 C 0.057 3.943 14 C -0.041 4.041 15 C -0.514 4.514 16 H 0.062 0.938 17 C -0.169 4.169 18 N -0.582 5.582 19 Si 0.750 3.250 20 H -0.190 1.190 21 H -0.232 1.232 22 H -0.166 1.166 23 C -0.228 4.228 24 C -0.188 4.188 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.042 0.958 28 H 0.161 0.839 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.224 0.776 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.240 0.760 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.401 9.456 7.161 20.241 hybrid contribution -0.011 -0.203 -1.825 1.836 sum -16.413 9.252 5.337 19.582 Atomic orbital electron populations 1.22247 0.86653 1.02483 1.00797 1.60372 1.08718 1.14012 1.50699 1.22565 0.94121 0.90343 1.02217 1.22510 0.92601 0.94392 0.87492 0.88629 1.86614 1.79320 1.55721 1.16355 1.22104 0.78147 0.96790 1.04903 1.46857 1.06698 1.77526 1.05302 1.21909 0.97304 1.02506 0.84925 1.16033 0.81884 0.77638 0.84073 1.90760 1.68867 1.59630 1.32561 1.45026 1.05006 1.74123 1.13392 1.20755 0.90440 0.97991 0.85106 1.19447 0.88389 0.93407 1.02887 1.20305 1.47211 0.90752 0.93124 0.93776 1.25642 0.93796 0.94711 1.02716 1.70026 1.47536 1.04061 1.36610 0.86123 0.79878 0.77628 0.81345 1.18968 1.23206 1.16556 1.22987 1.01671 1.04132 0.94037 1.22882 1.02484 0.97710 0.95764 0.90929 0.90886 0.95783 0.83912 0.88168 0.94539 0.77641 0.86081 0.90621 0.90805 0.88290 0.92839 0.75986 0.92829 0.94820 0.92768 0.90482 0.88257 0.87777 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 127.69 1.37 1.77 16 2 N -0.71 -13.75 6.86 -537.14 -3.68 -17.44 16 3 C 0.04 0.65 5.36 86.30 0.46 1.12 16 4 C 0.09 2.04 3.48 30.59 0.11 2.15 16 5 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 6 O -0.57 -17.88 11.78 -147.26 -1.73 -19.62 16 7 C 0.10 2.21 5.15 86.38 0.44 2.66 16 8 N -0.63 -17.25 2.83 -864.91 -2.45 -19.70 16 9 C 0.08 1.59 10.23 127.77 1.31 2.90 16 10 C 0.70 26.25 7.70 179.06 1.38 27.63 16 11 O -0.64 -27.31 15.02 -2.26 -0.03 -27.35 16 12 N -0.72 -28.00 5.25 -478.54 -2.51 -30.52 16 13 C 0.18 7.70 5.31 86.38 0.46 8.16 16 14 C -0.04 -1.74 0.93 -52.93 -0.05 -1.79 16 15 C -0.48 -25.72 8.94 25.60 0.23 -25.49 16 16 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 17 C 0.03 1.70 5.46 84.66 0.46 2.16 16 18 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 19 Si 0.92 45.45 25.22 68.60 1.73 47.18 16 20 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 22 H -0.24 -11.35 5.36 99.48 0.53 -10.82 16 23 C -0.19 -7.43 7.77 30.62 0.24 -7.20 16 24 C -0.15 -5.44 9.94 30.62 0.30 -5.14 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.02 0.33 8.14 -2.38 -0.02 0.31 16 28 H 0.34 7.43 8.37 -89.69 -0.75 6.68 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.38 11.06 8.62 -74.06 -0.64 10.42 16 32 H 0.12 1.58 8.07 -2.39 -0.02 1.56 16 33 H 0.08 1.79 7.36 -2.38 -0.02 1.78 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.51 8.03 -2.39 -0.02 1.49 16 36 H 0.05 1.33 6.39 -2.38 -0.02 1.32 16 37 H 0.40 14.87 5.98 -92.70 -0.55 14.32 16 38 H 0.05 2.08 8.11 -2.38 -0.02 2.06 16 39 H 0.03 1.63 6.04 -2.39 -0.01 1.62 16 40 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.08 3.22 7.47 -2.39 -0.02 3.21 16 42 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -71.97 353.67 -2.78 -74.75 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -1.11 Total: 41.89 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 6.71 Total: 8.92 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -8.34 Total: -125.78 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.77 Total: -46.96 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.73 Total: 47.18 kcal Total: -71.97 -2.78 -74.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578645973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.048 kcal (2) G-P(sol) polarization free energy of solvation -71.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds