Wall clock time and date at job start Tue Mar 31 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47407 * 245.00011 * 3 2 1 5 5 H 1.48500 * 109.47215 * 5.00128 * 3 2 1 6 6 H 1.48506 * 109.47175 * 124.99917 * 3 2 1 7 7 C 1.38978 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00101 * 161.02694 * 7 2 1 9 9 N 1.36942 * 120.00125 * 340.74915 * 7 2 1 10 10 C 1.46502 * 120.00435 * 143.30713 * 9 7 2 11 11 C 1.50692 * 109.47501 * 96.59101 * 10 9 7 12 12 O 1.20827 * 120.00188 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00167 * 180.02562 * 11 10 9 14 14 C 1.34784 * 120.00035 * 323.30410 * 9 7 2 15 15 O 1.21662 * 119.99606 * 355.53065 * 14 9 7 16 16 C 1.47173 * 120.00199 * 175.53597 * 14 9 7 17 17 C 1.35297 * 123.15469 * 185.48923 * 16 14 9 18 18 S 1.70937 * 108.82159 * 179.97438 * 17 16 14 19 19 C 1.70765 * 91.13688 * 0.28502 * 18 17 16 20 20 C 1.50704 * 124.71058 * 179.85510 * 19 18 17 21 21 O 1.42906 * 109.47049 * 274.91223 * 20 19 18 22 22 N 1.28648 * 110.58027 * 359.83280 * 19 18 17 23 23 H 0.96998 * 120.00428 * 5.03548 * 1 2 3 24 24 H 1.08998 * 109.47148 * 216.59778 * 10 9 7 25 25 H 1.08999 * 109.46421 * 336.59347 * 10 9 7 26 26 H 0.96705 * 116.99842 * 180.02562 * 13 11 10 27 27 H 1.08004 * 125.58348 * 0.03389 * 17 16 14 28 28 H 1.08997 * 109.47418 * 34.91306 * 20 19 18 29 29 H 1.08994 * 109.47118 * 154.91537 * 20 19 18 30 30 H 0.96696 * 114.00207 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0080 1.7507 -1.2688 5 1 1.2877 2.7438 0.1221 6 1 3.1910 1.6450 1.1469 7 6 2.0090 -1.2036 0.0005 8 1 3.0450 -1.2291 -0.3035 9 7 1.3818 -2.3562 0.3921 10 6 1.6862 -3.6211 -0.2816 11 6 2.7178 -4.3784 0.5140 12 8 3.1538 -3.9100 1.5389 13 8 3.1525 -5.5735 0.0841 14 6 0.4844 -2.3271 1.3973 15 8 0.2913 -1.2942 2.0105 16 6 -0.2618 -3.5447 1.7532 17 6 -1.2516 -3.5630 2.6754 18 16 -1.8621 -5.1550 2.7976 19 6 -0.7568 -5.7058 1.6183 20 6 -0.6577 -7.1293 1.1334 21 8 0.1839 -7.8753 2.0152 22 7 -0.0207 -4.7368 1.2008 23 1 -0.4851 0.8368 -0.0737 24 1 0.7779 -4.2184 -0.3607 25 1 2.0748 -3.4169 -1.2793 26 1 3.8144 -6.0216 0.6283 27 1 -1.5996 -2.7111 3.2408 28 1 -1.6514 -7.5767 1.1145 29 1 -0.2341 -7.1424 0.1293 30 1 0.2929 -8.8027 1.7640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184378.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:32 Heat of formation + Delta-G solvation = -90.666903 kcal Electronic energy + Delta-G solvation = -21094.974004 eV Core-core repulsion = 17598.172718 eV Total energy + Delta-G solvation = -3496.801286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.050 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.09104 -39.15281 -37.60378 -36.67389 -35.37139 -34.08413 -31.94877 -30.74797 -27.56603 -27.16329 -25.69921 -23.36648 -21.41923 -20.34836 -19.22391 -18.26099 -17.68254 -17.38845 -16.33499 -15.90691 -15.55065 -15.27493 -14.84979 -14.57546 -14.39164 -14.14969 -13.72190 -13.20440 -12.76807 -12.51775 -12.08530 -11.96701 -11.75302 -11.52254 -11.13158 -10.88942 -10.77125 -10.66509 -10.29680 -10.24920 -9.87097 -9.31064 -9.17543 -8.94855 -8.43488 -8.30264 -7.23151 -6.19140 -3.86538 0.92227 1.58937 2.00711 2.63193 3.11664 3.30928 3.38103 3.43245 3.70883 3.96098 4.26748 4.66860 4.83958 4.93397 5.00332 5.28906 5.33097 5.44981 5.78542 5.89986 6.06786 6.18928 6.30837 6.62403 7.16262 7.41859 7.53467 7.84859 8.14623 8.67353 8.91882 9.07464 9.52773 10.18957 10.89665 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.006847 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.998913 B = 4088.636546 C = 5059.833069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.064 3.936 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.084 0.916 9 N -0.416 5.416 10 C 0.108 3.892 11 C 0.469 3.531 12 O -0.511 6.511 13 O -0.526 6.526 14 C 0.536 3.464 15 O -0.517 6.517 16 C 0.048 3.952 17 C -0.238 4.238 18 S 0.185 5.815 19 C 0.005 3.995 20 C 0.160 3.840 21 O -0.563 6.563 22 N -0.432 5.432 23 H 0.268 0.732 24 H 0.135 0.865 25 H 0.103 0.897 26 H 0.394 0.606 27 H 0.185 0.815 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -15.695 -0.449 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.147 4.147 3 Si 0.748 3.252 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.136 5.136 10 C -0.019 4.019 11 C 0.309 3.691 12 O -0.398 6.398 13 O -0.337 6.337 14 C 0.322 3.678 15 O -0.394 6.394 16 C -0.086 4.086 17 C -0.380 4.380 18 S 0.440 5.560 19 C -0.273 4.273 20 C 0.079 3.921 21 O -0.368 6.368 22 N -0.151 5.151 23 H 0.078 0.922 24 H 0.152 0.848 25 H 0.121 0.879 26 H 0.251 0.749 27 H 0.202 0.798 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.504 -14.674 0.459 15.356 hybrid contribution 1.327 0.749 -0.126 1.529 sum -3.177 -13.925 0.333 14.287 Atomic orbital electron populations 1.69858 1.06660 1.27966 1.40695 1.25177 0.94930 0.99504 0.95133 0.86113 0.79293 0.81219 0.78544 1.20275 1.20988 1.19772 1.19133 0.95354 0.84281 1.47828 0.89803 1.42793 1.37695 1.04823 1.28297 1.21476 0.97662 0.87919 0.94846 1.24713 0.81019 0.78410 0.84918 1.90677 1.56070 1.67962 1.25078 1.84556 1.58296 1.34502 1.56297 1.16503 0.84242 0.84924 0.82138 1.90636 1.66704 1.30501 1.51546 1.21290 0.97916 0.92973 0.96436 1.26425 1.03142 1.02497 1.05935 1.82340 1.35668 1.00222 1.37804 1.26708 0.99455 0.99503 1.01628 1.20334 0.94474 0.84138 0.93156 1.86561 1.70681 1.26259 1.53347 1.67208 1.23765 0.98992 1.25122 0.92217 0.84820 0.87942 0.74949 0.79824 0.91467 0.90285 0.76788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.35 11.22 55.50 0.62 -23.72 16 2 C 0.06 1.83 4.36 -17.46 -0.08 1.75 16 3 Si 0.92 22.30 29.60 -169.99 -5.03 17.27 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.34 -9.71 9.28 -15.00 -0.14 -9.85 16 8 H 0.08 2.31 7.90 -52.48 -0.41 1.89 16 9 N -0.42 -11.26 2.12 -117.40 -0.25 -11.51 16 10 C 0.11 2.36 5.57 -5.20 -0.03 2.33 16 11 C 0.47 9.89 7.33 36.00 0.26 10.15 16 12 O -0.51 -12.90 17.03 -18.75 -0.32 -13.22 16 13 O -0.53 -8.47 13.42 -39.26 -0.53 -9.00 16 14 C 0.54 15.00 6.60 -12.63 -0.08 14.91 16 15 O -0.52 -16.19 14.03 5.22 0.07 -16.12 16 16 C 0.05 1.10 6.50 -84.53 -0.55 0.55 16 17 C -0.24 -4.68 10.62 29.68 0.32 -4.36 16 18 S 0.19 2.68 22.92 -107.50 -2.46 0.21 16 19 C 0.01 0.08 6.97 -13.61 -0.09 -0.01 16 20 C 0.16 1.76 7.62 36.01 0.27 2.04 16 21 O -0.56 -6.25 13.64 -35.23 -0.48 -6.73 16 22 N -0.43 -8.54 5.94 -8.51 -0.05 -8.59 16 23 H 0.27 7.56 8.32 -40.82 -0.34 7.22 16 24 H 0.13 2.76 5.16 -51.93 -0.27 2.49 16 25 H 0.10 2.03 7.99 -51.93 -0.41 1.61 16 26 H 0.39 4.71 9.10 45.56 0.41 5.13 16 27 H 0.18 3.53 8.04 -52.48 -0.42 3.11 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.38 2.01 9.12 45.56 0.42 2.42 16 LS Contribution 288.01 15.07 4.34 4.34 Total: -1.00 -38.97 288.01 -4.87 -43.85 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -0.67 Total: 5.72 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -0.12 Total: 17.51 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.32 Total: -43.83 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.25 Total: -45.07 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.46 Total: 0.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -38.97 -4.87 -43.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184378.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.822 kcal (2) G-P(sol) polarization free energy of solvation -38.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds