Wall clock time and date at job start Tue Mar 31 2020 02:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34635 * 116.99954 * 2 1 4 4 O 1.21508 * 120.00407 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99827 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00107 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.47293 * 179.97438 * 6 5 3 8 8 O 1.21289 * 120.00205 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00460 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00394 * 180.02562 * 9 7 6 11 11 C 1.53010 * 109.46984 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.91432 * 308.90167 * 11 10 9 13 13 C 1.55159 * 111.00026 * 184.99828 * 11 10 9 14 14 C 1.54324 * 102.94134 * 206.42377 * 13 11 10 15 15 N 1.47020 * 107.39983 * 22.11770 * 14 13 11 16 16 C 1.36946 * 125.64749 * 181.10549 * 15 14 13 17 17 H 1.08003 * 119.99807 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99708 * 0.02562 * 16 15 14 19 19 N 1.31618 * 120.00158 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99504 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47699 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47286 * 120.00119 * 20 18 16 23 23 H 1.48500 * 109.47131 * 240.00056 * 20 18 16 24 24 C 1.47743 * 108.53125 * 1.18235 * 15 14 13 25 25 H 1.09004 * 109.46921 * 300.00070 * 1 2 3 26 26 H 1.08998 * 109.46971 * 59.99598 * 1 2 3 27 27 H 1.08991 * 109.47246 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99971 * 359.97438 * 5 3 2 29 29 H 1.09006 * 109.46915 * 59.99703 * 6 5 3 30 30 H 1.08995 * 109.46922 * 300.00106 * 6 5 3 31 31 H 0.97011 * 119.99999 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47343 * 60.00156 * 10 9 7 33 33 H 1.08996 * 109.47121 * 299.99391 * 10 9 7 34 34 H 1.09004 * 110.72010 * 88.06167 * 13 11 10 35 35 H 1.08995 * 110.87585 * 324.86016 * 13 11 10 36 36 H 1.09002 * 109.88322 * 141.61300 * 14 13 11 37 37 H 1.09000 * 109.88025 * 262.62465 * 14 13 11 38 38 H 0.96997 * 119.99987 * 180.02562 * 19 18 16 39 39 H 1.09003 * 110.29227 * 216.94505 * 24 15 14 40 40 H 1.08996 * 110.53057 * 94.67717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0744 2.5754 0.0000 7 6 5.5683 2.3780 -0.0001 8 8 6.0319 1.2572 -0.0011 9 7 6.3894 3.4467 -0.0001 10 6 7.8417 3.2547 -0.0008 11 6 8.5364 4.6180 -0.0014 12 1 8.1429 5.2548 -0.7936 13 6 10.0745 4.4583 -0.1283 14 6 10.6118 5.7351 0.5519 15 7 9.5590 6.2309 1.4503 16 6 9.6351 7.3591 2.2230 17 1 8.8037 7.6392 2.8529 18 6 10.7808 8.1424 2.1965 19 7 11.7937 7.8012 1.4284 20 14 10.8848 9.6807 3.2509 21 1 9.6235 9.8415 4.0179 22 1 12.0251 9.5580 4.1945 23 1 11.0890 10.8655 2.3792 24 6 8.4082 5.3070 1.3801 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.9375 0.4566 -0.0005 29 1 3.7818 3.1319 0.8905 30 1 3.7811 3.1330 -0.8894 31 1 6.0187 4.3432 0.0003 32 1 8.1342 2.6980 -0.8911 33 1 8.1350 2.6976 0.8889 34 1 10.3735 4.4245 -1.1760 35 1 10.4172 3.5675 0.3980 36 1 11.5084 5.5002 1.1255 37 1 10.8409 6.4883 -0.2019 38 1 12.5944 8.3483 1.4102 39 1 7.4727 5.8631 1.4413 40 1 8.4622 4.5678 2.1792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691118163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:22 Heat of formation + Delta-G solvation = -91.927298 kcal Electronic energy + Delta-G solvation = -21968.709747 eV Core-core repulsion = 18398.485787 eV Total energy + Delta-G solvation = -3570.223960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.83647 -39.85490 -37.77837 -36.91548 -35.07661 -34.66345 -32.60288 -30.20238 -29.15555 -28.20603 -27.02932 -25.36429 -23.51806 -21.71157 -20.93222 -20.05728 -19.97810 -19.21910 -17.34540 -17.02963 -16.97165 -16.64683 -16.21076 -15.85931 -15.17407 -14.65564 -14.51715 -14.33813 -14.03637 -13.70114 -13.37589 -13.27819 -12.70794 -12.39920 -12.39043 -12.04927 -11.81438 -11.46145 -11.10512 -10.98854 -10.92959 -10.83940 -10.53453 -10.24277 -10.07808 -9.95716 -9.86868 -9.69637 -9.66019 -9.15534 -8.63493 -6.86987 -5.74457 -3.08168 1.74418 2.32774 2.50093 3.02954 3.37721 3.43314 3.45743 3.95642 4.41848 4.47000 4.80812 4.88110 4.94732 4.97460 5.02034 5.15176 5.15828 5.35809 5.50393 5.61541 5.74901 5.82235 5.94097 5.98596 6.01979 6.24752 6.29378 6.44878 6.47849 6.61691 6.84803 7.04636 7.28554 7.52944 7.59309 7.79874 7.93280 7.98619 8.22487 9.18803 9.78939 10.44949 11.37320 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031976 B = 0.002579 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.442301 B =10854.239407 C =11574.013539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.573 6.573 5 N -0.697 5.697 6 C 0.117 3.883 7 C 0.508 3.492 8 O -0.541 6.541 9 N -0.715 5.715 10 C 0.132 3.868 11 C -0.118 4.118 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.176 3.824 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.141 3.859 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.419 0.581 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.406 0.594 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.252 0.748 39 H 0.036 0.964 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -13.661 -5.259 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.462 6.462 5 N -0.360 5.360 6 C -0.010 4.010 7 C 0.293 3.707 8 O -0.419 6.419 9 N -0.367 5.367 10 C 0.009 3.991 11 C -0.138 4.138 12 H 0.099 0.901 13 C -0.173 4.173 14 C 0.051 3.949 15 N -0.333 5.333 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.014 3.986 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.258 0.742 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.241 0.759 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -16.986 -13.811 -5.205 22.503 hybrid contribution 0.100 1.026 0.553 1.170 sum -16.886 -12.785 -4.653 21.685 Atomic orbital electron populations 1.23225 0.74112 1.03593 1.02856 1.86252 1.24365 1.30765 1.87005 1.17965 0.83059 0.82312 0.76384 1.91020 1.64672 1.34801 1.55726 1.44191 1.03265 1.10463 1.78053 1.21043 0.89489 0.84856 1.05585 1.20318 0.88431 0.85306 0.76694 1.90718 1.77322 1.23702 1.50111 1.45965 1.07618 1.09028 1.74057 1.21481 0.77428 0.97866 1.02330 1.22624 0.96820 0.94274 1.00068 0.90059 1.22856 0.93191 1.00762 1.00538 1.21151 0.90986 0.90181 0.92545 1.44560 1.12819 1.25796 1.50151 1.19098 1.00327 0.98534 1.17693 0.90399 1.24818 0.96398 0.99366 0.99984 1.69973 1.05739 1.39391 1.41823 0.86036 0.77437 0.82735 0.79493 1.20507 1.21751 1.21746 1.21648 0.91842 0.92315 0.92761 0.91712 0.91748 0.87856 0.74231 0.87700 0.87798 0.75878 0.91348 0.91016 0.91945 0.92165 0.93913 0.93508 0.93780 0.94532 0.96244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.63 10.62 -40.31 -0.43 -4.06 16 3 C 0.65 7.41 8.75 54.06 0.47 7.89 16 4 O -0.57 -7.90 16.13 -19.28 -0.31 -8.21 16 5 N -0.70 -7.07 5.53 -66.47 -0.37 -7.44 16 6 C 0.12 1.05 6.15 -5.20 -0.03 1.02 16 7 C 0.51 5.62 7.90 -10.99 -0.09 5.54 16 8 O -0.54 -7.73 15.67 5.55 0.09 -7.65 16 9 N -0.72 -7.61 5.50 -60.30 -0.33 -7.94 16 10 C 0.13 1.69 5.13 -4.04 -0.02 1.67 16 11 C -0.12 -1.81 3.05 -88.47 -0.27 -2.08 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.13 -2.33 6.42 -24.90 -0.16 -2.49 16 14 C 0.18 4.14 5.37 -3.06 -0.02 4.12 16 15 N -0.61 -15.02 3.41 -169.81 -0.58 -15.60 16 16 C -0.23 -6.25 10.29 -15.05 -0.15 -6.41 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.14 2.68 6.67 -2.35 -0.02 2.66 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.42 4.18 7.55 -40.82 -0.31 3.87 16 29 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.41 3.54 8.47 -40.82 -0.35 3.19 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.04 1.12 7.51 -51.93 -0.39 0.74 16 37 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -33.96 338.03 -6.62 -40.58 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.02 Total: 1.60 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 0.69 Total: 13.00 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.71 Total: -57.22 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.65 Total: -19.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.96 -6.62 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691118163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.347 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds