Wall clock time and date at job start Tue Mar 31 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99785 * 2 1 4 4 C 1.50703 * 109.46915 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99926 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99773 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47006 * 180.02562 * 8 7 6 10 10 C 1.46839 * 111.00175 * 45.79285 * 9 8 7 11 11 C 1.53038 * 109.52321 * 185.83828 * 10 9 8 12 12 C 1.53111 * 109.28032 * 300.82001 * 11 10 9 13 13 N 1.46502 * 109.57610 * 177.59088 * 12 11 10 14 14 C 1.36938 * 119.99887 * 85.28770 * 13 12 11 15 15 H 1.07997 * 119.99863 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99835 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00071 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99905 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47044 * 90.00150 * 18 16 14 20 20 H 1.48505 * 109.46783 * 210.00419 * 18 16 14 21 21 H 1.48505 * 109.47009 * 330.00091 * 18 16 14 22 22 C 1.53117 * 109.16032 * 57.65459 * 12 11 10 23 23 C 1.46851 * 110.99682 * 170.00115 * 9 8 7 24 24 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46796 * 299.99531 * 1 2 3 26 26 H 1.09002 * 109.47326 * 59.99644 * 1 2 3 27 27 H 1.08998 * 109.46619 * 60.00544 * 3 2 1 28 28 H 1.08993 * 109.47057 * 299.99974 * 3 2 1 29 29 H 0.96992 * 120.00503 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 31 31 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 32 32 H 1.09001 * 109.46801 * 300.00349 * 8 7 6 33 33 H 1.09001 * 109.46998 * 59.99945 * 8 7 6 34 34 H 1.09000 * 109.46389 * 305.85096 * 10 9 8 35 35 H 1.08998 * 109.46466 * 65.81826 * 10 9 8 36 36 H 1.09001 * 109.50415 * 180.87699 * 11 10 9 37 37 H 1.09005 * 109.50244 * 60.76180 * 11 10 9 38 38 H 1.09006 * 109.52471 * 297.75264 * 12 11 10 39 39 H 0.97001 * 119.99798 * 265.28408 * 13 12 11 40 40 H 0.96993 * 120.00120 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.50431 * 182.40729 * 22 12 11 42 42 H 1.08996 * 109.50401 * 62.28603 * 22 12 11 43 43 H 1.08992 * 109.46356 * 294.17825 * 23 9 8 44 44 H 1.09007 * 109.46137 * 54.15905 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0002 7 6 5.7369 2.1812 -0.0003 8 6 6.3592 3.5789 -0.0004 9 7 7.8236 3.4629 -0.0011 10 6 8.2723 2.4686 -0.9840 11 6 9.7842 2.2691 -0.8560 12 6 10.4925 3.6054 -1.0944 13 7 11.9366 3.4341 -0.9168 14 6 12.7077 2.9969 -1.9606 15 1 12.2512 2.7781 -2.9145 16 6 14.0760 2.8351 -1.7924 17 7 14.6323 3.1014 -0.6296 18 14 15.1278 2.2381 -3.2161 19 1 15.6127 3.4046 -3.9965 20 1 16.2894 1.4779 -2.6886 21 1 14.3174 1.3570 -4.0948 22 6 9.9721 4.6363 -0.0889 23 6 8.4547 4.7673 -0.2393 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8593 3.1726 0.0001 30 1 6.0584 1.6406 -0.8905 31 1 6.0585 1.6400 0.8895 32 1 6.0375 4.1198 -0.8904 33 1 6.0376 4.1199 0.8896 34 1 7.7643 1.5218 -0.8008 35 1 8.0359 2.8189 -1.9888 36 1 10.1193 1.5425 -1.5962 37 1 10.0199 1.9055 0.1442 38 1 10.2885 3.9502 -2.1081 39 1 12.3465 3.6304 -0.0598 40 1 15.5885 2.9887 -0.5123 41 1 10.4414 5.6012 -0.2811 42 1 10.2107 4.3101 0.9233 43 1 8.2175 5.1069 -1.2474 44 1 8.0792 5.4901 0.4852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699993652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:21 Heat of formation + Delta-G solvation = -90.647642 kcal Electronic energy + Delta-G solvation = -22338.465990 eV Core-core repulsion = 18904.130614 eV Total energy + Delta-G solvation = -3434.335376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94513 -40.09277 -38.44453 -37.09125 -35.74041 -34.02866 -31.98577 -31.57267 -30.30425 -28.47254 -26.71688 -25.90459 -24.65400 -23.45739 -22.17876 -21.74539 -20.73782 -19.09986 -18.40465 -17.83202 -17.33821 -17.22954 -16.62845 -16.36593 -16.05329 -15.85809 -15.46155 -15.42153 -15.25945 -15.10601 -14.48996 -14.30182 -13.98453 -13.97750 -13.17470 -13.11699 -12.99534 -12.86941 -12.67241 -12.49871 -12.34771 -12.20801 -12.17265 -12.04120 -11.76203 -11.51517 -11.17161 -10.95498 -10.85010 -10.75274 -10.16111 -9.24968 -8.99375 -7.94188 -5.22452 1.45664 1.47541 1.54201 1.55847 1.77811 2.55608 2.92061 3.24138 3.38355 3.73205 3.79996 3.83027 4.01930 4.08253 4.19888 4.21724 4.30150 4.34184 4.37074 4.49757 4.51609 4.55910 4.59396 4.70468 4.75341 4.87804 4.89090 4.93861 4.97144 4.98469 5.12365 5.19681 5.35109 5.44285 5.49439 5.60818 6.05231 6.10764 6.17369 6.28627 6.53978 7.21712 7.33739 8.11180 8.34349 9.29372 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002460 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.099130 B =11378.605100 C =11959.862784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.047 3.953 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.709 5.709 7 C 0.119 3.881 8 C 0.055 3.945 9 N -0.545 5.545 10 C 0.062 3.938 11 C -0.124 4.124 12 C 0.171 3.829 13 N -0.738 5.738 14 C -0.238 4.238 15 H 0.073 0.927 16 C -0.079 4.079 17 N -0.970 5.970 18 Si 0.972 3.028 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.271 1.271 22 C -0.114 4.114 23 C 0.073 3.927 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.422 0.578 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.442 4.544 1.674 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.032 4.032 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.364 5.364 7 C -0.005 4.005 8 C -0.073 4.073 9 N -0.271 5.271 10 C -0.067 4.067 11 C -0.164 4.164 12 C 0.063 3.937 13 N -0.377 5.377 14 C -0.369 4.369 15 H 0.091 0.909 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.801 3.199 19 H -0.213 1.213 20 H -0.223 1.223 21 H -0.196 1.196 22 C -0.152 4.152 23 C -0.055 4.055 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.260 0.740 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -30.776 3.391 1.949 31.023 hybrid contribution 0.867 0.219 -1.077 1.400 sum -29.908 3.610 0.873 30.138 Atomic orbital electron populations 1.23031 0.78202 1.04073 1.01772 1.87976 1.22239 1.27077 1.95830 1.22396 0.88457 0.86715 1.05669 1.21069 0.90504 0.83941 0.75418 1.90743 1.75957 1.28944 1.50368 1.45607 1.06331 1.09395 1.75087 1.21364 0.79319 0.98023 1.01782 1.22228 0.86603 0.95129 1.03292 1.61908 1.06393 1.08524 1.50277 1.22097 0.94918 0.96280 0.93356 1.22108 0.94491 0.99308 1.00528 1.20496 0.82879 0.93562 0.96807 1.42652 1.02973 1.79830 1.12273 1.19603 0.89903 1.34945 0.92498 0.90947 1.25561 0.98194 1.03834 0.99500 1.69819 1.10529 1.57185 1.24547 0.85161 0.78266 0.77769 0.78712 1.21255 1.22275 1.19648 1.21751 0.95669 0.98630 0.99187 1.22001 0.92825 0.90051 1.00658 0.89104 0.92010 0.92083 0.86841 0.86968 0.74047 0.92531 0.92382 0.92375 0.87820 0.90331 0.94492 0.93877 0.93483 0.94586 0.79653 0.94092 0.91619 0.92387 0.94019 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.75 10.24 -129.94 -1.33 -9.08 16 3 C 0.05 0.54 6.42 71.24 0.46 0.99 16 4 C 0.50 10.16 7.91 87.66 0.69 10.85 16 5 O -0.58 -19.23 16.50 16.01 0.26 -18.96 16 6 N -0.71 -9.76 5.56 -463.05 -2.57 -12.33 16 7 C 0.12 2.29 4.93 86.38 0.43 2.72 16 8 C 0.06 0.86 5.39 86.31 0.46 1.33 16 9 N -0.55 -12.97 4.81 -896.35 -4.31 -17.28 16 10 C 0.06 1.75 4.85 86.33 0.42 2.16 16 11 C -0.12 -4.64 5.68 30.64 0.17 -4.46 16 12 C 0.17 6.90 2.84 45.07 0.13 7.02 16 13 N -0.74 -38.39 5.13 -322.57 -1.65 -40.04 16 14 C -0.24 -13.54 9.93 84.03 0.83 -12.70 16 15 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 16 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 17 N -0.97 -60.72 13.06 21.65 0.28 -60.44 16 18 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 C -0.11 -3.68 5.57 30.65 0.17 -3.51 16 23 C 0.07 1.69 5.42 86.33 0.47 2.16 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.42 2.03 8.47 -92.71 -0.79 1.24 16 30 H 0.06 1.32 6.21 -2.39 -0.01 1.30 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 2.17 5.81 -2.39 -0.01 2.15 16 35 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.04 1.49 8.08 -2.38 -0.02 1.47 16 39 H 0.37 20.81 7.80 -92.71 -0.72 20.08 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 1.81 8.12 -2.38 -0.02 1.79 16 Total: -1.00 -79.97 356.15 -1.86 -81.83 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.52 Total: 23.17 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.95 Total: 3.85 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -8.25 Total: -130.09 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.07 Total: -28.05 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -79.97 -1.86 -81.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699993652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.821 kcal (2) G-P(sol) polarization free energy of solvation -79.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds