Wall clock time and date at job start Tue Mar 31 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48497 * 109.47036 * 270.00262 * 3 2 1 5 5 H 1.48500 * 109.47228 * 30.00209 * 3 2 1 6 6 H 1.48498 * 109.46949 * 150.00202 * 3 2 1 7 7 C 1.37880 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99539 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00533 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47015 * 180.02562 * 11 10 9 13 13 O 1.21262 * 120.00004 * 359.97438 * 12 11 10 14 14 C 1.47168 * 120.00520 * 180.02562 * 12 11 10 15 15 C 1.39851 * 120.17582 * 180.02562 * 14 12 11 16 16 C 1.37885 * 119.82281 * 180.29957 * 15 14 12 17 17 C 1.38402 * 120.17407 * 359.43610 * 16 15 14 18 18 C 1.50696 * 119.82806 * 180.28065 * 17 16 15 19 19 F 1.39893 * 109.47571 * 270.27660 * 18 17 16 20 20 F 1.39901 * 109.46831 * 30.28055 * 18 17 16 21 21 F 1.39904 * 109.47339 * 150.27801 * 18 17 16 22 22 C 1.38410 * 120.34833 * 0.56494 * 17 16 15 23 23 C 1.37892 * 120.16928 * 359.71584 * 22 17 16 24 24 H 0.96999 * 119.99636 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46482 * 60.00055 * 9 7 2 26 26 H 1.08995 * 109.47307 * 300.00648 * 9 7 2 27 27 H 1.09002 * 109.46832 * 60.00381 * 10 9 7 28 28 H 1.08995 * 109.47577 * 300.00551 * 10 9 7 29 29 H 1.08994 * 109.47429 * 60.00142 * 11 10 9 30 30 H 1.09003 * 109.47138 * 300.00220 * 11 10 9 31 31 H 1.08002 * 120.08457 * 0.02562 * 15 14 12 32 32 H 1.07998 * 119.91348 * 179.72125 * 16 15 14 33 33 H 1.07999 * 119.91764 * 179.69813 * 22 17 16 34 34 H 1.08001 * 120.08323 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4595 -6.1325 -0.0031 13 8 3.6517 -5.9110 -0.0035 14 6 1.9691 -7.5201 -0.0044 15 6 2.8747 -8.5858 -0.0044 16 6 2.4072 -9.8829 -0.0119 17 6 1.0457 -10.1318 -0.0075 18 6 0.5434 -11.5525 -0.0093 19 9 0.3890 -11.9910 -1.3287 20 9 1.4643 -12.3735 0.6503 21 9 -0.6897 -11.6121 0.6491 22 6 0.1431 -9.0825 -0.0074 23 6 0.5949 -7.7797 -0.0058 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8726 -3.6048 0.8878 28 1 2.8714 -3.6040 -0.8921 29 1 0.8533 -5.0442 -0.8922 30 1 0.8540 -5.0455 0.8877 31 1 3.9374 -8.3932 -0.0031 32 1 3.1052 -10.7070 -0.0165 33 1 -0.9179 -9.2846 -0.0089 34 1 -0.1107 -6.9620 -0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:46 Heat of formation + Delta-G solvation = -183.105301 kcal Electronic energy + Delta-G solvation = -21121.060785 eV Core-core repulsion = 17182.323816 eV Total energy + Delta-G solvation = -3938.736969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.51717 -48.03151 -47.97618 -40.29667 -38.52476 -34.34641 -32.78484 -32.04389 -31.48344 -28.40757 -26.67081 -24.23574 -23.22665 -22.61514 -20.51772 -19.56650 -18.89417 -18.82517 -18.68077 -16.80261 -16.30828 -15.68110 -15.35429 -15.21978 -14.83646 -14.78598 -14.50060 -14.43927 -14.25272 -14.13274 -14.12266 -13.81441 -13.71949 -13.58124 -12.84810 -12.31803 -12.04449 -11.84919 -11.61245 -11.43751 -10.84873 -10.65553 -10.59272 -9.86682 -9.77046 -9.57541 -9.50610 -9.30576 -9.03939 -8.35839 -6.01459 -4.03205 0.07043 0.86925 2.15384 2.26805 3.28251 3.31548 3.32146 3.38263 3.42500 3.63937 3.92955 4.04967 4.38098 4.41832 4.46379 4.84993 4.89703 5.13485 5.24426 5.34731 5.48556 5.57734 5.60173 5.70860 5.75531 5.94801 6.23706 6.28858 6.61820 6.82046 7.05914 7.56208 7.65345 7.77708 7.98589 8.42093 9.03786 9.61096 11.09962 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.002571 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.800775 B =10887.800530 C =11344.211051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.165 4.165 12 C 0.389 3.611 13 O -0.440 6.440 14 C -0.129 4.129 15 C -0.069 4.069 16 C -0.084 4.084 17 C -0.164 4.164 18 C 0.508 3.492 19 F -0.175 7.175 20 F -0.177 7.177 21 F -0.175 7.175 22 C -0.083 4.083 23 C -0.073 4.073 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -24.433 -0.022 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.140 4.140 11 C -0.202 4.202 12 C 0.266 3.734 13 O -0.314 6.314 14 C -0.130 4.130 15 C -0.087 4.087 16 C -0.102 4.102 17 C -0.166 4.166 18 C 0.454 3.546 19 F -0.157 7.157 20 F -0.158 7.158 21 F -0.157 7.157 22 C -0.101 4.101 23 C -0.091 4.091 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.068 -24.231 -0.018 24.231 hybrid contribution 0.173 0.563 -0.011 0.589 sum 0.106 -23.668 -0.030 23.668 Atomic orbital electron populations 1.69960 1.06038 1.26607 1.51053 1.25022 0.94861 0.99273 0.95321 0.86592 0.79893 0.83406 0.78128 1.20655 1.21226 1.19845 1.21265 0.93165 0.91042 1.50366 0.92613 1.19120 0.93921 0.91393 0.97204 1.21512 0.98847 0.92083 1.01544 1.22198 0.99006 0.94850 1.04186 1.22922 0.90335 0.88950 0.71219 1.90521 1.18899 1.87130 1.34876 1.21122 0.94405 0.96219 1.01207 1.21474 1.00998 0.90895 0.95328 1.20917 0.93566 0.98003 0.97682 1.20214 0.95958 0.91419 1.08970 1.18316 0.75358 0.87069 0.73894 1.93238 1.95508 1.91016 1.35904 1.93199 1.66338 1.75117 1.81130 1.93204 1.44427 1.96882 1.81165 1.20961 1.00012 0.91710 0.97397 1.21595 0.94946 0.96896 0.95693 0.93018 0.96545 0.96525 0.92735 0.92743 0.88477 0.88483 0.83670 0.84208 0.83986 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.08 4.44 -26.73 -0.12 -2.20 16 11 C -0.17 -2.47 4.31 -27.88 -0.12 -2.60 16 12 C 0.39 5.55 7.12 -30.69 -0.22 5.33 16 13 O -0.44 -7.64 15.98 5.57 0.09 -7.55 16 14 C -0.13 -1.45 5.87 -105.06 -0.62 -2.07 16 15 C -0.07 -0.70 9.60 -39.11 -0.38 -1.08 16 16 C -0.08 -0.74 9.38 -39.65 -0.37 -1.11 16 17 C -0.16 -1.47 5.46 -104.50 -0.57 -2.04 16 18 C 0.51 4.49 3.36 36.00 0.12 4.62 16 19 F -0.18 -1.65 17.30 2.25 0.04 -1.61 16 20 F -0.18 -1.60 16.45 2.25 0.04 -1.56 16 21 F -0.18 -1.59 16.45 2.25 0.04 -1.55 16 22 C -0.08 -0.70 9.38 -39.64 -0.37 -1.07 16 23 C -0.07 -0.68 9.47 -39.10 -0.37 -1.05 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.15 8.10 -51.93 -0.42 0.73 16 28 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.10 1.30 8.09 -51.93 -0.42 0.88 16 30 H 0.10 1.30 8.09 -51.93 -0.42 0.88 16 31 H 0.15 1.42 7.65 -52.49 -0.40 1.02 16 32 H 0.14 0.95 7.60 -52.49 -0.40 0.56 16 33 H 0.14 0.92 7.59 -52.49 -0.40 0.53 16 34 H 0.15 1.13 7.05 -52.49 -0.37 0.76 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -31.43 312.85 -6.57 -38.00 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -3.64 Total: -4.75 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -3.56 Total: -16.43 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.55 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.11 Total: -4.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.43 -6.57 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.104 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds