Wall clock time and date at job start Tue Mar 31 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99923 * 2 1 4 4 H 1.48497 * 109.47036 * 270.00262 * 3 2 1 5 5 H 1.48500 * 109.47228 * 30.00209 * 3 2 1 6 6 H 1.48498 * 109.46949 * 150.00202 * 3 2 1 7 7 C 1.37880 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99539 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00533 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47015 * 180.02562 * 11 10 9 13 13 O 1.21262 * 120.00004 * 359.97438 * 12 11 10 14 14 C 1.47168 * 120.00520 * 180.02562 * 12 11 10 15 15 C 1.39851 * 120.17582 * 180.02562 * 14 12 11 16 16 C 1.37885 * 119.82281 * 180.29957 * 15 14 12 17 17 C 1.38402 * 120.17407 * 359.43610 * 16 15 14 18 18 C 1.50696 * 119.82806 * 180.28065 * 17 16 15 19 19 F 1.39893 * 109.47571 * 270.27660 * 18 17 16 20 20 F 1.39901 * 109.46831 * 30.28055 * 18 17 16 21 21 F 1.39904 * 109.47339 * 150.27801 * 18 17 16 22 22 C 1.38410 * 120.34833 * 0.56494 * 17 16 15 23 23 C 1.37892 * 120.16928 * 359.71584 * 22 17 16 24 24 H 0.96999 * 119.99636 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46482 * 60.00055 * 9 7 2 26 26 H 1.08995 * 109.47307 * 300.00648 * 9 7 2 27 27 H 1.09002 * 109.46832 * 60.00381 * 10 9 7 28 28 H 1.08995 * 109.47577 * 300.00551 * 10 9 7 29 29 H 1.08994 * 109.47429 * 60.00142 * 11 10 9 30 30 H 1.09003 * 109.47138 * 300.00220 * 11 10 9 31 31 H 1.08002 * 120.08457 * 0.02562 * 15 14 12 32 32 H 1.07998 * 119.91348 * 179.72125 * 16 15 14 33 33 H 1.07999 * 119.91764 * 179.69813 * 22 17 16 34 34 H 1.08001 * 120.08323 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4595 -6.1325 -0.0031 13 8 3.6517 -5.9110 -0.0035 14 6 1.9691 -7.5201 -0.0044 15 6 2.8747 -8.5858 -0.0044 16 6 2.4072 -9.8829 -0.0119 17 6 1.0457 -10.1318 -0.0075 18 6 0.5434 -11.5525 -0.0093 19 9 0.3890 -11.9910 -1.3287 20 9 1.4643 -12.3735 0.6503 21 9 -0.6897 -11.6121 0.6491 22 6 0.1431 -9.0825 -0.0074 23 6 0.5949 -7.7797 -0.0058 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5572 0.8896 27 1 2.8726 -3.6048 0.8878 28 1 2.8714 -3.6040 -0.8921 29 1 0.8533 -5.0442 -0.8922 30 1 0.8540 -5.0455 0.8877 31 1 3.9374 -8.3932 -0.0031 32 1 3.1052 -10.7070 -0.0165 33 1 -0.9179 -9.2846 -0.0089 34 1 -0.1107 -6.9620 -0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002392919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:46 Heat of formation + Delta-G solvation = -199.201442 kcal Electronic energy + Delta-G solvation = -21121.758766 eV Core-core repulsion = 17182.323816 eV Total energy + Delta-G solvation = -3939.434950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.21888 -48.72929 -48.68512 -41.24960 -39.50239 -36.16228 -34.18248 -33.35968 -32.28397 -29.97200 -27.74573 -25.82726 -23.96763 -23.71925 -22.06684 -20.72941 -19.60089 -19.52720 -19.39274 -18.49137 -17.74583 -16.68846 -16.65460 -16.44211 -15.92809 -15.57422 -15.54689 -15.21192 -15.12866 -14.98083 -14.93434 -14.83296 -14.60979 -14.50027 -14.25154 -13.80039 -13.69081 -13.10122 -12.76793 -12.62298 -12.55116 -12.42600 -12.22929 -11.55030 -11.52376 -11.26628 -10.64958 -10.53914 -10.38830 -10.19993 -8.20144 -6.29869 -0.75435 0.17288 1.17634 1.40095 1.40596 1.52030 1.56361 2.41113 2.47158 2.60566 2.90865 2.94965 3.13098 3.35244 3.67451 3.76959 4.03959 4.13748 4.15378 4.27619 4.34286 4.51536 4.78835 4.83413 4.97637 5.00275 5.02183 5.12580 5.19670 5.23250 5.53899 5.56106 5.76518 5.87640 6.28110 6.45459 6.86183 7.38898 8.91186 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.002571 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.800775 B =10887.800530 C =11344.211051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.091 4.091 11 C -0.160 4.160 12 C 0.399 3.601 13 O -0.482 6.482 14 C -0.145 4.145 15 C -0.074 4.074 16 C -0.082 4.082 17 C -0.164 4.164 18 C 0.512 3.488 19 F -0.178 7.178 20 F -0.177 7.177 21 F -0.175 7.175 22 C -0.081 4.081 23 C -0.067 4.067 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 -25.346 -0.022 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.197 4.197 12 C 0.278 3.722 13 O -0.358 6.358 14 C -0.146 4.146 15 C -0.092 4.092 16 C -0.099 4.099 17 C -0.165 4.165 18 C 0.458 3.542 19 F -0.160 7.160 20 F -0.159 7.159 21 F -0.157 7.157 22 C -0.098 4.098 23 C -0.085 4.085 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.161 0.839 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.523 -25.161 -0.019 25.167 hybrid contribution 0.263 0.781 -0.011 0.824 sum -0.260 -24.381 -0.029 24.382 Atomic orbital electron populations 1.70061 1.07454 1.27764 1.51609 1.25889 0.95807 1.03001 0.94751 0.85530 0.78664 0.78862 0.78514 1.19771 1.20397 1.19278 1.21718 0.93356 0.92912 1.50657 0.93067 1.19017 0.94233 0.92302 0.95631 1.21252 0.97851 0.93495 1.00320 1.22121 0.99023 0.92321 1.06253 1.22956 0.89372 0.90136 0.69701 1.90515 1.20280 1.87782 1.37270 1.20852 0.95586 0.94416 1.03740 1.21521 1.00932 0.91294 0.95443 1.21077 0.94016 0.97885 0.96970 1.20365 0.96173 0.91662 1.08340 1.18245 0.75293 0.86916 0.73714 1.93236 1.95522 1.91046 1.36151 1.93200 1.66376 1.75160 1.81134 1.93207 1.44437 1.96874 1.81152 1.21224 1.01141 0.91099 0.96377 1.21779 0.94178 0.97906 0.94639 0.92677 0.97978 0.97960 0.93986 0.93971 0.86407 0.86416 0.83873 0.82362 0.81755 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.78 4.44 30.59 0.14 -3.64 16 11 C -0.16 -4.66 4.31 29.85 0.13 -4.53 16 12 C 0.40 11.16 7.12 28.03 0.20 11.36 16 13 O -0.48 -16.95 15.98 -2.97 -0.05 -17.00 16 14 C -0.15 -3.07 5.87 -20.15 -0.12 -3.19 16 15 C -0.07 -1.42 9.60 22.58 0.22 -1.20 16 16 C -0.08 -1.27 9.38 22.23 0.21 -1.07 16 17 C -0.16 -2.54 5.46 -19.79 -0.11 -2.65 16 18 C 0.51 7.90 3.36 71.23 0.24 8.13 16 19 F -0.18 -2.98 17.30 44.97 0.78 -2.21 16 20 F -0.18 -2.84 16.45 44.97 0.74 -2.10 16 21 F -0.18 -2.76 16.45 44.97 0.74 -2.02 16 22 C -0.08 -1.13 9.38 22.23 0.21 -0.92 16 23 C -0.07 -1.07 9.47 22.58 0.21 -0.86 16 24 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 29 H 0.12 2.95 8.09 -2.39 -0.02 2.94 16 30 H 0.12 2.95 8.09 -2.39 -0.02 2.93 16 31 H 0.14 2.77 7.65 -2.91 -0.02 2.74 16 32 H 0.16 1.82 7.60 -2.91 -0.02 1.79 16 33 H 0.16 1.56 7.59 -2.91 -0.02 1.54 16 34 H 0.17 2.02 7.05 -2.91 -0.02 2.00 16 Total: -1.00 -67.73 312.85 7.81 -59.91 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 1.12 Total: -0.06 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 2.17 Total: -27.81 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.24 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.05 Total: -17.00 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 2.26 Total: -6.33 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.73 7.81 -59.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.290 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds