Wall clock time and date at job start Tue Mar 31 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39965 * 125.81673 * 2 1 4 4 C 1.35277 * 107.96639 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.18983 * 179.97438 * 4 3 2 6 6 N 1.35848 * 107.61743 * 0.02562 * 4 3 2 7 7 C 1.39810 * 126.09860 * 179.97438 * 6 4 3 8 8 C 1.39081 * 119.91859 * 325.27429 * 7 6 4 9 9 C 1.37688 * 120.08829 * 180.28309 * 8 7 6 10 10 C 1.39812 * 119.91021 * 359.44005 * 9 8 7 11 11 C 1.47478 * 120.08116 * 180.25718 * 10 9 8 12 12 O 1.21527 * 120.00233 * 0.02562 * 11 10 9 13 13 O 1.34764 * 119.99373 * 180.02562 * 11 10 9 14 14 C 1.34852 * 116.99778 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00228 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00077 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99946 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00044 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47183 * 89.99793 * 18 16 14 20 20 H 1.48494 * 109.46912 * 210.00032 * 18 16 14 21 21 H 1.48502 * 109.47066 * 330.00234 * 18 16 14 22 22 C 1.39793 * 119.82963 * 0.28452 * 10 9 8 23 23 C 1.37696 * 119.91147 * 359.97438 * 22 10 9 24 24 N 1.30830 * 125.81728 * 180.30793 * 2 1 3 25 25 H 1.09000 * 109.47106 * 89.99895 * 1 2 3 26 26 H 1.08994 * 109.47286 * 209.99652 * 1 2 3 27 27 H 1.08996 * 109.46946 * 329.99856 * 1 2 3 28 28 H 1.07994 * 126.01356 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47636 * 270.02234 * 5 4 3 30 30 H 1.09001 * 109.47257 * 30.02849 * 5 4 3 31 31 H 1.09004 * 109.47137 * 150.02455 * 5 4 3 32 32 H 1.07998 * 119.95314 * 0.02562 * 8 7 6 33 33 H 1.08002 * 120.04750 * 179.72533 * 9 8 7 34 34 H 0.97002 * 119.99745 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.04689 * 180.02562 * 22 10 9 36 36 H 1.07999 * 119.95426 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1350 0.0000 4 6 3.6137 0.7203 -0.0006 5 6 4.8335 1.6052 -0.0013 6 7 3.6082 -0.6382 -0.0015 7 6 4.7345 -1.4665 -0.0028 8 6 5.8799 -1.0788 -0.6900 9 6 6.9891 -1.8945 -0.6985 10 6 6.9670 -3.1085 -0.0054 11 6 8.1549 -3.9825 -0.0072 12 8 9.1547 -3.6476 -0.6113 13 8 8.1315 -5.1526 0.6611 14 6 9.2502 -5.9043 0.6185 15 1 10.1119 -5.5595 0.0663 16 6 9.2946 -7.1209 1.2854 17 7 8.2463 -7.5403 1.9579 18 14 10.8446 -8.1619 1.2271 19 1 11.7325 -7.7917 2.3584 20 1 10.4807 -9.5977 1.3327 21 1 11.5528 -7.9238 -0.0563 22 6 5.8158 -3.4920 0.6889 23 6 4.7088 -2.6732 0.6882 24 7 2.2726 -1.0609 -0.0057 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5138 28 1 1.9893 2.1611 0.0004 29 1 5.1269 1.8188 -1.0291 30 1 4.6054 2.5389 0.5129 31 1 5.6506 1.0981 0.5118 32 1 5.8978 -0.1386 -1.2211 33 1 7.8766 -1.5949 -1.2360 34 1 8.2775 -8.3903 2.4242 35 1 5.7951 -4.4288 1.2259 36 1 3.8189 -2.9689 1.2240 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003469185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:38 Heat of formation + Delta-G solvation = 1.396728 kcal Electronic energy + Delta-G solvation = -21105.616787 eV Core-core repulsion = 17749.029918 eV Total energy + Delta-G solvation = -3356.586869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.65408 -41.28588 -39.79170 -37.30922 -35.26762 -34.36553 -33.41490 -32.20972 -31.49255 -28.95157 -28.05233 -27.45846 -24.82649 -24.03101 -22.19104 -21.28773 -20.62177 -19.93451 -19.10164 -18.55089 -17.27608 -16.78811 -16.62049 -16.28370 -15.82992 -15.77688 -15.22645 -14.84204 -14.67759 -14.56822 -14.26823 -14.09275 -13.90500 -13.71901 -13.48461 -13.35246 -13.17068 -13.06984 -12.74361 -12.43623 -12.35621 -12.17803 -12.03354 -11.56572 -11.22024 -10.94757 -10.74486 -10.26724 -9.92704 -9.26150 -8.60497 -6.37324 -0.65690 0.13749 0.79908 1.27019 1.33073 1.36701 1.50948 1.70458 1.73570 2.06472 2.57703 2.63747 2.98559 3.45168 3.59360 3.70347 3.73884 3.97544 4.10228 4.18145 4.38236 4.45807 4.49449 4.66475 4.71746 4.77494 4.81922 4.84540 4.96044 5.02404 5.03526 5.10100 5.14658 5.26693 5.32767 5.44837 5.72461 5.75900 6.11921 6.54194 6.64422 6.83870 7.66320 8.59892 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.034445 B = 0.003213 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.705556 B = 8713.262000 C = 9377.775359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.074 3.926 3 C -0.266 4.266 4 C 0.081 3.919 5 C -0.101 4.101 6 N -0.344 5.344 7 C 0.174 3.826 8 C -0.126 4.126 9 C -0.037 4.037 10 C -0.120 4.120 11 C 0.433 3.567 12 O -0.576 6.576 13 O -0.232 6.232 14 C -0.419 4.419 15 H 0.086 0.914 16 C -0.003 4.003 17 N -0.896 5.896 18 Si 1.021 2.979 19 H -0.258 1.258 20 H -0.259 1.259 21 H -0.262 1.262 22 C -0.051 4.051 23 C -0.124 4.124 24 N -0.336 5.336 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.184 0.816 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.281 0.719 35 H 0.132 0.868 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.695 18.889 -2.858 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C -0.293 4.293 4 C -0.041 4.041 5 C -0.159 4.159 6 N -0.121 5.121 7 C 0.081 3.919 8 C -0.146 4.146 9 C -0.056 4.056 10 C -0.122 4.122 11 C 0.283 3.717 12 O -0.476 6.476 13 O -0.139 6.139 14 C -0.495 4.495 15 H 0.104 0.896 16 C -0.204 4.204 17 N -0.533 5.533 18 Si 0.839 3.161 19 H -0.183 1.183 20 H -0.183 1.183 21 H -0.186 1.186 22 C -0.071 4.071 23 C -0.144 4.144 24 N -0.156 5.156 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.201 0.799 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.448 17.476 -2.861 21.646 hybrid contribution 0.662 -0.205 0.131 0.706 sum -11.786 17.271 -2.730 21.087 Atomic orbital electron populations 1.20361 0.83874 1.04519 1.04195 1.23234 0.98791 0.90610 0.96728 1.21606 0.90156 1.00995 1.16557 1.22126 0.99502 0.82916 0.99575 1.20839 0.91601 0.98298 1.05118 1.45895 1.03739 1.04425 1.57998 1.17730 0.85255 0.91426 0.97464 1.21121 0.90806 1.02292 1.00370 1.21170 0.98968 0.90413 0.95042 1.19375 0.92436 0.96229 1.04180 1.21557 0.88405 0.82304 0.79482 1.90581 1.35859 1.75004 1.46177 1.83918 1.40292 1.28157 1.61554 1.21541 0.91520 1.01265 1.35140 0.89640 1.26620 1.02929 0.96858 0.93995 1.70060 1.31153 1.21883 1.30188 0.84587 0.75065 0.76773 0.79705 1.18279 1.18330 1.18620 1.21321 0.91005 0.99191 0.95539 1.20878 0.98928 0.94012 1.00549 1.77461 0.86058 1.24460 1.27622 0.89129 0.91213 0.87673 0.79894 0.87759 0.86967 0.90903 0.80955 0.82852 0.90942 0.85043 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.44 71.24 0.74 -0.21 16 2 C 0.07 1.61 7.21 43.13 0.31 1.93 16 3 C -0.27 -4.85 10.65 22.00 0.23 -4.62 16 4 C 0.08 1.67 6.77 41.25 0.28 1.95 16 5 C -0.10 -1.26 8.59 71.24 0.61 -0.64 16 6 N -0.34 -9.49 3.74 -175.54 -0.66 -10.15 16 7 C 0.17 5.15 6.30 38.27 0.24 5.39 16 8 C -0.13 -3.28 8.27 22.34 0.18 -3.10 16 9 C -0.04 -1.20 9.59 22.52 0.22 -0.99 16 10 C -0.12 -4.99 5.88 -20.09 -0.12 -5.11 16 11 C 0.43 22.97 7.83 70.26 0.55 23.52 16 12 O -0.58 -32.41 15.59 19.75 0.31 -32.10 16 13 O -0.23 -13.97 8.98 11.04 0.10 -13.87 16 14 C -0.42 -25.73 9.65 67.96 0.66 -25.07 16 15 H 0.09 5.29 6.86 -2.91 -0.02 5.27 16 16 C 0.00 -0.17 5.50 84.89 0.47 0.30 16 17 N -0.90 -52.97 13.67 21.63 0.30 -52.68 16 18 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 22 C -0.05 -1.99 9.61 22.52 0.22 -1.77 16 23 C -0.12 -4.10 9.74 22.34 0.22 -3.89 16 24 N -0.34 -9.84 12.33 -47.33 -0.58 -10.42 16 25 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.10 0.91 7.74 -2.39 -0.02 0.89 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.05 6.89 -2.39 -0.02 1.03 16 32 H 0.17 3.15 6.05 -2.91 -0.02 3.13 16 33 H 0.15 4.68 7.64 -2.91 -0.02 4.66 16 34 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.13 5.53 7.60 -2.91 -0.02 5.50 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -78.13 320.96 7.41 -70.72 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.11 Total: 15.44 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.81 Total: -12.31 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.94 Total: -73.25 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: 0.41 Total: -45.98 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.13 7.41 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003469185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.114 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds