Wall clock time and date at job start Tue Mar 31 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38321 * 119.87712 * 2 1 4 4 C 1.38013 * 120.12699 * 180.02562 * 3 2 1 5 5 C 1.39387 * 119.86983 * 359.97438 * 4 3 2 6 6 C 1.48285 * 120.12159 * 180.02562 * 5 4 3 7 7 N 1.31354 * 126.51458 * 324.96885 * 6 5 4 8 8 N 1.39768 * 109.09666 * 180.02562 * 7 6 5 9 9 C 1.46506 * 125.15003 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47289 * 305.02870 * 9 8 7 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00111 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47123 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47161 * 209.99603 * 14 12 10 17 17 H 1.48497 * 109.47329 * 329.99749 * 14 12 10 18 18 C 1.34113 * 109.69747 * 0.27018 * 8 7 6 19 19 C 1.38044 * 107.87864 * 359.57412 * 18 8 7 20 20 C 1.47140 * 126.82606 * 180.13497 * 19 18 8 21 21 O 1.21534 * 120.00283 * 180.32347 * 20 19 18 22 22 O 1.34779 * 119.99578 * 0.32983 * 20 19 18 23 23 C 1.39376 * 119.75090 * 0.27579 * 5 4 3 24 24 C 1.38011 * 119.87286 * 359.47260 * 23 5 4 25 25 H 1.08998 * 109.47186 * 89.99615 * 1 2 3 26 26 H 1.08992 * 109.47606 * 209.99904 * 1 2 3 27 27 H 1.09004 * 109.46684 * 330.00228 * 1 2 3 28 28 H 1.07994 * 119.93827 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.06286 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47060 * 65.03320 * 9 8 7 31 31 H 1.09004 * 109.47073 * 185.02809 * 9 8 7 32 32 H 0.97007 * 120.00011 * 180.02562 * 13 12 10 33 33 H 1.08000 * 126.06157 * 179.69726 * 18 8 7 34 34 H 0.96703 * 116.99489 * 179.97438 * 22 20 19 35 35 H 1.08007 * 120.06667 * 179.72144 * 23 5 4 36 36 H 1.07997 * 119.94048 * 180.23023 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2756 -0.0003 -0.0005 6 6 5.7584 -0.0003 -0.0005 7 7 6.5400 0.8641 -0.6065 8 7 7.8736 0.5211 -0.3669 9 6 9.0370 1.2505 -0.8777 10 6 8.9400 1.3640 -2.3773 11 1 8.0959 0.9361 -2.8977 12 6 9.9282 2.0151 -3.0847 13 7 9.8438 2.1137 -4.3934 14 14 11.3877 2.7558 -2.1844 15 1 12.4713 1.7455 -2.0828 16 1 11.8827 3.9389 -2.9332 17 1 10.9695 3.1719 -0.8217 18 6 7.9269 -0.5798 0.3972 19 6 6.6311 -0.9658 0.6753 20 6 6.2090 -2.1205 1.4838 21 8 5.0264 -2.3500 1.6447 22 8 7.1340 -2.9236 2.0459 23 6 3.5760 -1.2057 -0.0058 24 6 2.1959 -1.1996 0.0000 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.6530 2.1329 -0.0004 29 1 4.1130 2.1424 -0.0010 30 1 9.0621 2.2478 -0.4387 31 1 9.9478 0.7136 -0.6121 32 1 10.5393 2.5714 -4.8912 33 1 8.8246 -1.0753 0.7365 34 1 6.8085 -3.6693 2.5685 35 1 4.1128 -2.1429 -0.0104 36 1 1.6527 -2.1330 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005000373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:55 Heat of formation + Delta-G solvation = -16.556983 kcal Electronic energy + Delta-G solvation = -21448.588226 eV Core-core repulsion = 18091.222825 eV Total energy + Delta-G solvation = -3357.365401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.22837 -40.53296 -40.00374 -36.89167 -35.77753 -34.50639 -33.02477 -31.99146 -31.51264 -29.85341 -27.72964 -25.30535 -24.23456 -23.68264 -22.50290 -21.67688 -20.60775 -19.16164 -18.72829 -18.57298 -17.11554 -16.94466 -16.60752 -16.34297 -16.05313 -15.76656 -15.51674 -14.75083 -14.60582 -14.59769 -14.36506 -14.11975 -14.07278 -13.57099 -13.21970 -12.96405 -12.81335 -12.58771 -12.49612 -12.22117 -12.16755 -11.97489 -11.81989 -11.62188 -11.29157 -10.90337 -10.72197 -9.81827 -9.77828 -9.15816 -8.40251 -6.52567 0.00390 0.46989 0.55334 1.25562 1.35265 1.38276 1.46842 1.56254 2.19367 2.27000 2.31606 2.89531 2.93252 3.40616 3.53701 3.99205 4.04310 4.12678 4.17788 4.30883 4.47234 4.54949 4.59429 4.74128 4.80728 4.89820 4.90242 4.93887 5.10517 5.18627 5.25824 5.33465 5.56329 5.67542 5.68667 5.76076 5.78970 6.10806 6.19853 6.51785 6.66657 7.10332 7.19060 8.76836 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.004522 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.655808 B = 6190.209889 C = 7447.599648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 C -0.135 4.135 4 C -0.100 4.100 5 C -0.055 4.055 6 C 0.144 3.856 7 N -0.308 5.308 8 N -0.333 5.333 9 C 0.229 3.771 10 C -0.553 4.553 11 H 0.025 0.975 12 C 0.017 3.983 13 N -0.940 5.940 14 Si 0.956 3.044 15 H -0.250 1.250 16 H -0.283 1.283 17 H -0.237 1.237 18 C 0.142 3.858 19 C -0.319 4.319 20 C 0.571 3.429 21 O -0.540 6.540 22 O -0.505 6.505 23 C -0.066 4.066 24 C -0.135 4.135 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.115 0.885 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.273 0.727 33 H 0.232 0.768 34 H 0.431 0.569 35 H 0.130 0.870 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 -7.371 14.619 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.119 4.119 5 C -0.057 4.057 6 C -0.024 4.024 7 N -0.128 5.128 8 N -0.108 5.108 9 C 0.110 3.890 10 C -0.591 4.591 11 H 0.044 0.956 12 C -0.182 4.182 13 N -0.579 5.579 14 Si 0.776 3.224 15 H -0.174 1.174 16 H -0.208 1.208 17 H -0.160 1.160 18 C -0.011 4.011 19 C -0.332 4.332 20 C 0.418 3.582 21 O -0.432 6.432 22 O -0.319 6.319 23 C -0.085 4.085 24 C -0.153 4.153 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.165 0.835 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.248 0.752 34 H 0.293 0.707 35 H 0.148 0.852 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.597 -5.879 13.467 17.551 hybrid contribution 0.708 -0.621 0.279 0.982 sum -8.889 -6.500 13.746 17.613 Atomic orbital electron populations 1.20858 0.88420 1.04027 1.03340 1.20433 0.97997 0.92444 0.96810 1.21176 0.92736 0.99165 1.02151 1.21291 0.95337 0.96609 0.98689 1.17906 0.86845 0.95154 1.05821 1.22270 0.93842 0.92046 0.94224 1.77486 0.88045 1.24402 1.22848 1.48745 1.05598 1.20898 1.35586 1.20148 0.81069 0.93701 0.94034 1.21161 1.08531 1.38617 0.90785 0.95619 1.25924 1.01545 0.95215 0.95558 1.70052 1.36067 1.43282 1.08482 0.85617 0.78260 0.78784 0.79727 1.17414 1.20846 1.15955 1.23828 1.00064 0.87149 0.90032 1.20348 0.92229 1.03728 1.16899 1.19287 0.82941 0.80227 0.75755 1.90829 1.18905 1.73014 1.60500 1.84516 1.41123 1.41976 1.64269 1.21493 0.94910 0.96991 0.95138 1.21221 0.93041 0.98953 1.02052 0.90054 0.90208 0.90241 0.83471 0.86722 0.92811 0.88958 0.91778 0.75210 0.70690 0.85225 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.01 71.23 0.71 -1.01 16 2 C -0.08 -1.86 5.88 -19.82 -0.12 -1.97 16 3 C -0.13 -3.63 9.68 22.24 0.22 -3.42 16 4 C -0.10 -3.41 9.76 22.49 0.22 -3.19 16 5 C -0.06 -2.08 5.73 -20.05 -0.11 -2.19 16 6 C 0.14 5.96 6.94 44.09 0.31 6.26 16 7 N -0.31 -14.41 12.27 -44.50 -0.55 -14.96 16 8 N -0.33 -14.10 3.62 -350.12 -1.27 -15.37 16 9 C 0.23 9.97 5.28 85.63 0.45 10.43 16 10 C -0.55 -31.01 9.76 25.60 0.25 -30.76 16 11 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 12 C 0.02 0.93 5.47 84.65 0.46 1.40 16 13 N -0.94 -57.15 13.96 21.45 0.30 -56.85 16 14 Si 0.96 39.10 27.47 68.60 1.88 40.98 16 15 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.24 -8.58 6.54 99.48 0.65 -7.93 16 18 C 0.14 4.76 11.23 84.30 0.95 5.70 16 19 C -0.32 -11.32 6.26 -18.79 -0.12 -11.44 16 20 C 0.57 17.02 8.19 70.16 0.57 17.60 16 21 O -0.54 -17.74 13.24 19.72 0.26 -17.48 16 22 O -0.51 -10.32 13.27 -56.90 -0.76 -11.07 16 23 C -0.07 -2.22 7.77 22.49 0.17 -2.04 16 24 C -0.13 -3.64 9.68 22.24 0.22 -3.43 16 25 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.11 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.05 2.28 7.20 -2.39 -0.02 2.26 16 31 H 0.09 3.30 7.47 -2.38 -0.02 3.28 16 32 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 33 H 0.23 5.25 8.06 -2.91 -0.02 5.23 16 34 H 0.43 4.32 9.11 -74.06 -0.67 3.65 16 35 H 0.13 4.48 5.68 -2.91 -0.02 4.47 16 36 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -76.57 318.60 4.45 -72.12 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.39 Total: 20.70 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 4.18 Total: -18.07 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.51 Total: -87.18 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.49 Total: -28.55 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.88 Total: 40.98 kcal Total: -76.57 4.45 -72.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.560 kcal (2) G-P(sol) polarization free energy of solvation -76.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds