Wall clock time and date at job start Tue Mar 31 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38126 * 119.97669 * 2 1 4 4 C 1.38176 * 120.16450 * 180.25618 * 3 2 1 5 5 C 1.39010 * 120.10717 * 359.76391 * 4 3 2 6 6 N 1.39864 * 120.02791 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99787 * 324.91709 * 6 5 4 8 8 O 1.21615 * 120.00315 * 4.60804 * 7 6 5 9 9 C 1.47352 * 119.99496 * 184.61242 * 7 6 5 10 10 C 1.47031 * 127.19286 * 180.02562 * 9 7 6 11 11 C 1.34174 * 105.95732 * 179.97438 * 10 9 7 12 12 O 1.34220 * 109.12827 * 359.97438 * 11 10 9 13 13 C 1.33659 * 110.90520 * 359.76769 * 12 11 10 14 14 C 1.38678 * 119.94540 * 359.97438 * 5 4 3 15 15 C 1.38973 * 119.83803 * 359.97438 * 14 5 4 16 16 N 1.39301 * 120.05564 * 180.02562 * 15 14 5 17 17 C 1.36859 * 119.99515 * 359.97438 * 16 15 14 18 18 H 1.07997 * 120.00012 * 0.02562 * 17 16 15 19 19 C 1.38791 * 119.99731 * 180.02562 * 17 16 15 20 20 N 1.31594 * 120.00344 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00056 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47325 * 89.99699 * 21 19 17 23 23 H 1.48502 * 109.47518 * 210.00279 * 21 19 17 24 24 H 1.48509 * 109.46986 * 330.00231 * 21 19 17 25 25 H 1.09000 * 109.46901 * 270.25907 * 1 2 3 26 26 H 1.09003 * 109.46947 * 30.25616 * 1 2 3 27 27 H 1.08997 * 109.47361 * 150.25784 * 1 2 3 28 28 H 1.08001 * 119.91558 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.94910 * 179.74243 * 4 3 2 30 30 H 0.96998 * 120.00049 * 144.91562 * 6 5 4 31 31 H 1.07997 * 127.01997 * 359.95965 * 10 9 7 32 32 H 1.07993 * 125.43516 * 180.02562 * 11 10 9 33 33 H 1.08001 * 125.79687 * 180.27153 * 13 12 11 34 34 H 1.07993 * 120.08117 * 180.02562 * 14 5 4 35 35 H 0.96995 * 120.00413 * 179.97438 * 16 15 14 36 36 H 0.96998 * 120.00668 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1965 0.0000 4 6 3.5788 1.2010 -0.0053 5 6 4.2801 0.0008 -0.0058 6 7 5.6787 0.0073 -0.0117 7 6 6.3452 0.9642 -0.6875 8 8 5.7336 1.8694 -1.2220 9 6 7.8150 0.9135 -0.7788 10 6 8.6961 1.8666 -1.4695 11 6 9.9459 1.4158 -1.2827 12 8 9.9031 0.2915 -0.5509 13 6 8.6434 -0.0239 -0.2345 14 6 3.5918 -1.2031 -0.0003 15 6 2.2020 -1.2050 0.0061 16 7 1.5060 -2.4117 0.0122 17 6 2.1909 -3.5966 0.0112 18 1 3.2709 -3.5961 0.0062 19 6 1.4975 -4.7989 0.0167 20 7 0.1816 -4.7995 0.0223 21 14 2.4322 -6.4162 0.0162 22 1 2.6859 -6.8418 1.4161 23 1 1.6272 -7.4530 -0.6783 24 1 3.7268 -6.2395 -0.6897 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3634 -0.8923 -0.5098 28 1 1.6553 2.1308 -0.0004 29 1 4.1149 2.1386 -0.0095 30 1 6.1689 -0.6768 0.4705 31 1 8.3980 2.7492 -2.0159 32 1 10.8432 1.8834 -1.6602 33 1 8.3338 -0.8773 0.3507 34 1 4.1343 -2.1369 -0.0002 35 1 0.5361 -2.4121 0.0170 36 1 -0.3031 -5.6397 0.0265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013534139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:06 Heat of formation + Delta-G solvation = -8.907146 kcal Electronic energy + Delta-G solvation = -21256.886989 eV Core-core repulsion = 17899.853310 eV Total energy + Delta-G solvation = -3357.033679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.47996 -41.27239 -39.75408 -36.96544 -35.74216 -33.99213 -33.50229 -32.37671 -30.65953 -29.89297 -27.38491 -26.47533 -24.68210 -23.02078 -22.42268 -22.12355 -20.79978 -19.91757 -19.16828 -18.54285 -17.26210 -17.11088 -16.69963 -16.52499 -16.18851 -15.97863 -15.56317 -15.33731 -14.69873 -14.60282 -14.50764 -14.24648 -13.84018 -13.52678 -13.36512 -13.31457 -13.16330 -12.82322 -12.53859 -12.25858 -12.16022 -12.01417 -11.62757 -11.11297 -10.87131 -10.83787 -10.40973 -9.76411 -9.00936 -8.42453 -8.36699 -5.67217 0.21827 0.74432 0.95796 1.17164 1.43043 1.50370 1.54964 1.96549 2.14895 2.30410 2.30966 2.94822 3.39675 3.51812 3.60957 3.78036 4.08450 4.21378 4.41039 4.51594 4.54739 4.69712 4.76835 4.86547 4.90349 4.97936 5.05964 5.08247 5.25772 5.33616 5.36477 5.58702 5.65156 5.78216 5.91825 5.97608 5.99572 6.43257 6.54576 6.87673 7.14888 7.57048 7.70904 8.76564 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.004274 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.365221 B = 6549.238507 C = 8216.813860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.223 4.223 3 C -0.050 4.050 4 C -0.233 4.233 5 C 0.187 3.813 6 N -0.655 5.655 7 C 0.582 3.418 8 O -0.561 6.561 9 C -0.269 4.269 10 C -0.196 4.196 11 C -0.020 4.020 12 O -0.174 6.174 13 C 0.047 3.953 14 C -0.254 4.254 15 C 0.209 3.791 16 N -0.586 5.586 17 C -0.315 4.315 18 H 0.104 0.896 19 C -0.033 4.033 20 N -0.935 5.935 21 Si 0.996 3.004 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.260 1.260 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.420 0.580 31 H 0.155 0.845 32 H 0.251 0.749 33 H 0.247 0.753 34 H 0.119 0.881 35 H 0.394 0.606 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.874 8.187 0.732 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.230 4.230 3 C -0.069 4.069 4 C -0.257 4.257 5 C 0.092 3.908 6 N -0.300 5.300 7 C 0.372 3.628 8 O -0.440 6.440 9 C -0.273 4.273 10 C -0.216 4.216 11 C -0.085 4.085 12 O -0.068 6.068 13 C -0.024 4.024 14 C -0.281 4.281 15 C 0.091 3.909 16 N -0.194 5.194 17 C -0.445 4.445 18 H 0.122 0.878 19 C -0.231 4.231 20 N -0.576 5.576 21 Si 0.820 3.180 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.184 1.184 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.059 0.941 28 H 0.152 0.848 29 H 0.134 0.866 30 H 0.258 0.742 31 H 0.173 0.827 32 H 0.267 0.733 33 H 0.263 0.737 34 H 0.137 0.863 35 H 0.229 0.771 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.660 8.216 0.411 18.580 hybrid contribution -0.567 -1.031 0.035 1.177 sum 16.093 7.186 0.446 17.630 Atomic orbital electron populations 1.20429 0.91053 1.01726 1.01480 1.19430 0.96235 0.91671 1.15663 1.20644 0.93274 0.96638 0.96349 1.20651 0.94207 0.96485 1.14351 1.17336 0.81947 0.93345 0.98165 1.43161 1.04701 1.30825 1.51275 1.17796 0.86775 0.81028 0.77152 1.90752 1.69927 1.35603 1.47734 1.21423 0.92264 1.02551 1.11106 1.22952 0.92166 1.01923 1.04543 1.24639 1.00176 0.86529 0.97188 1.83854 1.29028 1.38284 1.55681 1.25075 0.80118 0.99233 0.97946 1.20106 0.92615 0.96361 1.18978 1.17766 0.91480 0.86214 0.95450 1.41016 1.07751 1.02047 1.68551 1.19997 0.93319 0.83625 1.47551 0.87815 1.26116 0.96497 1.02786 0.97687 1.69794 1.07359 1.28861 1.51547 0.84858 0.78020 0.76667 0.78484 1.19778 1.21030 1.18414 0.92024 0.90251 0.94146 0.84762 0.86568 0.74215 0.82694 0.73348 0.73718 0.86324 0.77082 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.56 71.23 0.68 -2.55 16 2 C -0.22 -9.22 5.90 -19.68 -0.12 -9.33 16 3 C -0.05 -1.89 9.68 22.23 0.22 -1.67 16 4 C -0.23 -9.28 8.69 22.44 0.20 -9.08 16 5 C 0.19 7.23 6.29 38.15 0.24 7.47 16 6 N -0.65 -19.92 5.32 -306.56 -1.63 -21.55 16 7 C 0.58 18.65 7.65 86.64 0.66 19.31 16 8 O -0.56 -22.58 14.41 -4.08 -0.06 -22.64 16 9 C -0.27 -6.42 6.31 -18.99 -0.12 -6.54 16 10 C -0.20 -4.04 11.01 23.65 0.26 -3.78 16 11 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 12 O -0.17 -2.65 10.52 4.36 0.05 -2.60 16 13 C 0.05 0.75 11.61 67.40 0.78 1.53 16 14 C -0.25 -10.83 9.22 22.55 0.21 -10.62 16 15 C 0.21 9.63 6.60 38.34 0.25 9.88 16 16 N -0.59 -29.76 5.33 -184.34 -0.98 -30.75 16 17 C -0.32 -16.41 9.55 84.04 0.80 -15.61 16 18 H 0.10 5.10 5.68 -2.91 -0.02 5.09 16 19 C -0.03 -1.71 5.50 84.86 0.47 -1.24 16 20 N -0.94 -51.48 13.05 21.65 0.28 -51.20 16 21 Si 1.00 40.70 29.55 68.60 2.03 42.72 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.08 2.39 8.09 -2.39 -0.02 2.37 16 27 H 0.04 1.57 6.55 -2.39 -0.02 1.55 16 28 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 29 H 0.12 4.69 6.21 -2.91 -0.02 4.67 16 30 H 0.42 9.26 7.80 -92.71 -0.72 8.54 16 31 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 32 H 0.25 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.25 1.88 7.48 -2.91 -0.02 1.86 16 34 H 0.12 4.94 5.96 -2.91 -0.02 4.92 16 35 H 0.39 20.55 5.88 -92.71 -0.54 20.00 16 36 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -70.10 313.42 4.90 -65.20 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.12 Total: 42.51 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 5.34 Total: -21.70 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -2.33 Total: -103.50 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.01 Total: -25.24 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -70.10 4.90 -65.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013534139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.292 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds