Wall clock time and date at job start Tue Mar 31 2020 03:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29718 * 126.20129 * 2 1 4 4 N 1.39448 * 111.44628 * 180.02562 * 3 2 1 5 5 C 1.46493 * 124.94344 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47283 * 270.02012 * 5 4 3 7 7 H 1.08001 * 119.99717 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00249 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46955 * 180.02562 * 10 8 6 12 12 H 1.48505 * 109.46981 * 299.99419 * 10 8 6 13 13 H 1.48495 * 109.47427 * 59.99571 * 10 8 6 14 14 C 1.34860 * 110.11345 * 0.25831 * 4 3 2 15 15 O 1.21870 * 127.01997 * 179.74480 * 14 4 3 16 16 C 1.47052 * 126.20364 * 180.02562 * 2 1 3 17 17 C 1.38386 * 127.55526 * 0.02562 * 16 2 1 18 18 C 1.46239 * 119.99455 * 171.67255 * 17 16 2 19 19 C 1.40344 * 120.14466 * 322.20363 * 18 17 16 20 20 C 1.36567 * 119.85164 * 179.71931 * 19 18 17 21 21 C 1.39149 * 120.14218 * 0.55153 * 20 19 18 22 22 O 1.35659 * 119.85758 * 179.69882 * 21 20 19 23 23 C 1.39158 * 120.29195 * 359.71631 * 21 20 19 24 24 C 1.36564 * 120.13982 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.46869 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46710 * 119.97980 * 1 2 3 27 27 H 1.08994 * 109.47012 * 239.98010 * 1 2 3 28 28 H 1.09001 * 109.47620 * 150.02001 * 5 4 3 29 29 H 1.09005 * 109.47134 * 30.02164 * 5 4 3 30 30 H 0.97004 * 119.99892 * 0.02562 * 9 8 6 31 31 H 1.07998 * 120.00590 * 351.67932 * 17 16 2 32 32 H 1.07997 * 120.07638 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.92438 * 180.29491 * 20 19 18 34 34 H 0.96699 * 113.99549 * 270.02190 * 22 21 20 35 35 H 1.07997 * 119.93418 * 180.02562 * 23 21 20 36 36 H 1.08000 * 120.07105 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0468 0.0000 4 7 3.6217 0.6916 -0.0006 5 6 4.7389 1.6391 -0.0013 6 6 5.1210 1.9642 -1.4223 7 1 4.5849 1.5107 -2.2428 8 6 6.1550 2.8406 -1.6749 9 7 6.8075 3.3933 -0.6757 10 14 6.6281 3.2441 -3.4364 11 1 7.7616 4.2035 -3.4370 12 1 7.0336 1.9993 -4.1375 13 1 5.4660 3.8495 -4.1349 14 6 3.7476 -0.6511 -0.0067 15 8 4.7849 -1.2908 -0.0132 16 6 2.3756 -1.1866 -0.0005 17 6 1.9886 -2.5152 -0.0016 18 6 2.9873 -3.5675 -0.1854 19 6 4.0533 -3.3792 -1.0787 20 6 4.9858 -4.3635 -1.2415 21 6 4.8744 -5.5557 -0.5325 22 8 5.8006 -6.5320 -0.7032 23 6 3.8168 -5.7510 0.3506 24 6 2.8805 -4.7724 0.5263 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5135 -0.8902 27 1 -0.3633 -0.5141 0.8898 28 1 5.5921 1.1954 0.5119 29 1 4.4407 2.5529 0.5129 30 1 6.5616 3.1841 0.2390 31 1 0.9490 -2.7750 0.1332 32 1 4.1382 -2.4562 -1.6331 33 1 5.8092 -4.2179 -1.9250 34 1 5.5859 -7.1589 -1.4075 35 1 3.7361 -6.6784 0.8981 36 1 2.0604 -4.9250 1.2122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025940671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:13 Heat of formation + Delta-G solvation = 24.689203 kcal Electronic energy + Delta-G solvation = -21657.853557 eV Core-core repulsion = 18302.276725 eV Total energy + Delta-G solvation = -3355.576832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71470 -39.67014 -37.14334 -36.60482 -34.36311 -32.94161 -31.73961 -31.21503 -28.96666 -28.56223 -26.16822 -24.53724 -22.89841 -22.69645 -21.60494 -19.45413 -19.24832 -18.54755 -17.19179 -16.22763 -16.04263 -15.59089 -15.26138 -15.04455 -14.83908 -14.18084 -13.77928 -13.64715 -13.49889 -13.37750 -13.00183 -12.57645 -12.53953 -12.31525 -12.02969 -11.94910 -11.64177 -11.34267 -11.15383 -10.72970 -10.67802 -10.48691 -10.13436 -9.96156 -9.29918 -9.08831 -8.88994 -8.47271 -8.21063 -7.60388 -6.48225 -4.21460 0.13809 1.41591 1.45134 2.82275 3.21097 3.40832 3.43242 3.49737 3.62153 3.68238 4.08556 4.25120 4.37025 4.48166 4.77659 4.84058 4.89011 5.22031 5.26713 5.28039 5.49665 5.54632 5.59367 5.70177 5.73328 5.83772 5.99276 6.05866 6.26051 6.39870 6.41757 6.57551 6.73099 6.79461 6.98590 7.17535 7.52100 7.84649 8.26842 8.29978 8.57886 8.70888 9.47107 10.89209 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.005082 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.068571 B = 5508.330115 C = 6931.727409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.072 3.928 3 N -0.207 5.207 4 N -0.436 5.436 5 C 0.261 3.739 6 C -0.611 4.611 7 H 0.053 0.947 8 C 0.024 3.976 9 N -0.904 5.904 10 Si 1.075 2.925 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.286 1.286 14 C 0.515 3.485 15 O -0.498 6.498 16 C -0.214 4.214 17 C 0.045 3.955 18 C -0.108 4.108 19 C -0.021 4.021 20 C -0.151 4.151 21 C 0.122 3.878 22 O -0.499 6.499 23 C -0.163 4.163 24 C -0.074 4.074 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.389 0.611 35 H 0.128 0.872 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.484 -17.625 0.359 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 N -0.016 5.016 4 N -0.254 5.254 5 C 0.143 3.857 6 C -0.650 4.650 7 H 0.072 0.928 8 C -0.181 4.181 9 N -0.540 5.540 10 Si 0.902 3.098 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.212 1.212 14 C 0.304 3.696 15 O -0.374 6.374 16 C -0.219 4.219 17 C 0.021 3.979 18 C -0.108 4.108 19 C -0.039 4.039 20 C -0.170 4.170 21 C 0.078 3.922 22 O -0.310 6.310 23 C -0.181 4.181 24 C -0.092 4.092 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.245 0.755 35 H 0.146 0.854 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.284 -15.555 -0.088 19.217 hybrid contribution -1.097 -1.805 0.629 2.204 sum -12.381 -17.360 0.541 21.330 Atomic orbital electron populations 1.20213 0.85758 1.04158 1.02795 1.23809 0.96580 0.88711 1.02446 1.75796 0.90320 1.25234 1.10249 1.49812 1.02840 1.06405 1.66362 1.19477 0.80391 0.86711 0.99075 1.22179 1.20608 1.30875 0.91340 0.92831 1.25868 0.92838 0.93035 1.06354 1.70819 1.40779 1.42278 1.00114 0.83463 0.76445 0.76503 0.73403 1.20432 1.21316 1.21246 1.18930 0.89077 0.83361 0.78267 1.90861 1.33557 1.63556 1.49383 1.22297 0.95744 0.94125 1.09751 1.22609 0.98326 0.89499 0.87439 1.18992 0.97139 0.94327 1.00337 1.21228 0.90478 0.97174 0.95058 1.21129 1.00269 0.93970 1.01620 1.18794 0.88483 0.89145 0.95824 1.84763 1.45791 1.41286 1.59118 1.20980 0.94962 1.00736 1.01471 1.20911 0.98684 0.91750 0.97855 0.90096 0.90158 0.90251 0.94088 0.94472 0.92203 0.83684 0.84898 0.85149 0.75451 0.85358 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.36 36.01 0.37 -0.33 16 2 C 0.07 1.18 7.47 -79.91 -0.60 0.58 16 3 N -0.21 -4.41 12.26 35.01 0.43 -3.98 16 4 N -0.44 -10.70 3.54 -62.54 -0.22 -10.92 16 5 C 0.26 7.23 5.34 -5.20 -0.03 7.21 16 6 C -0.61 -18.18 9.39 -34.44 -0.32 -18.50 16 7 H 0.05 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.02 0.70 5.46 -17.82 -0.10 0.60 16 9 N -0.90 -27.80 13.65 55.43 0.76 -27.05 16 10 Si 1.07 25.90 29.90 -169.99 -5.08 20.82 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.52 11.71 7.33 -12.55 -0.09 11.61 16 15 O -0.50 -12.34 13.96 5.04 0.07 -12.27 16 16 C -0.21 -3.62 6.06 -102.59 -0.62 -4.24 16 17 C 0.04 0.56 9.79 -36.32 -0.36 0.21 16 18 C -0.11 -1.48 5.47 -105.10 -0.58 -2.05 16 19 C -0.02 -0.34 7.03 -39.39 -0.28 -0.62 16 20 C -0.15 -2.22 9.92 -39.85 -0.40 -2.62 16 21 C 0.12 1.56 6.72 -38.90 -0.26 1.30 16 22 O -0.50 -5.56 13.48 -18.68 -0.25 -5.81 16 23 C -0.16 -1.83 9.92 -39.84 -0.40 -2.23 16 24 C -0.07 -0.82 9.76 -39.39 -0.38 -1.20 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 1.20 7.92 -51.93 -0.41 0.79 16 29 H 0.04 1.04 8.01 -51.93 -0.42 0.63 16 30 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 31 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 2.46 6.19 -52.49 -0.32 2.14 16 33 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.39 2.17 9.06 45.56 0.41 2.58 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -37.27 321.01 -6.69 -43.96 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.20 Total: 0.68 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -4.03 Total: -10.27 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.96 Total: -41.94 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.18 Total: -18.08 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -37.27 -6.69 -43.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025940671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.651 kcal (2) G-P(sol) polarization free energy of solvation -37.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds