Wall clock time and date at job start Tue Mar 31 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29718 * 126.20129 * 2 1 4 4 N 1.39448 * 111.44628 * 180.02562 * 3 2 1 5 5 C 1.46493 * 124.94344 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47283 * 270.02012 * 5 4 3 7 7 H 1.08001 * 119.99717 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00249 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00253 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00044 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46955 * 180.02562 * 10 8 6 12 12 H 1.48505 * 109.46981 * 299.99419 * 10 8 6 13 13 H 1.48495 * 109.47427 * 59.99571 * 10 8 6 14 14 C 1.34860 * 110.11345 * 0.25831 * 4 3 2 15 15 O 1.21870 * 127.01997 * 179.74480 * 14 4 3 16 16 C 1.47052 * 126.20364 * 180.02562 * 2 1 3 17 17 C 1.38386 * 127.55526 * 0.02562 * 16 2 1 18 18 C 1.46239 * 119.99455 * 171.67255 * 17 16 2 19 19 C 1.40344 * 120.14466 * 322.20363 * 18 17 16 20 20 C 1.36567 * 119.85164 * 179.71931 * 19 18 17 21 21 C 1.39149 * 120.14218 * 0.55153 * 20 19 18 22 22 O 1.35659 * 119.85758 * 179.69882 * 21 20 19 23 23 C 1.39158 * 120.29195 * 359.71631 * 21 20 19 24 24 C 1.36564 * 120.13982 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.46869 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46710 * 119.97980 * 1 2 3 27 27 H 1.08994 * 109.47012 * 239.98010 * 1 2 3 28 28 H 1.09001 * 109.47620 * 150.02001 * 5 4 3 29 29 H 1.09005 * 109.47134 * 30.02164 * 5 4 3 30 30 H 0.97004 * 119.99892 * 0.02562 * 9 8 6 31 31 H 1.07998 * 120.00590 * 351.67932 * 17 16 2 32 32 H 1.07997 * 120.07638 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.92438 * 180.29491 * 20 19 18 34 34 H 0.96699 * 113.99549 * 270.02190 * 22 21 20 35 35 H 1.07997 * 119.93418 * 180.02562 * 23 21 20 36 36 H 1.08000 * 120.07105 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0468 0.0000 4 7 3.6217 0.6916 -0.0006 5 6 4.7389 1.6391 -0.0013 6 6 5.1210 1.9642 -1.4223 7 1 4.5849 1.5107 -2.2428 8 6 6.1550 2.8406 -1.6749 9 7 6.8075 3.3933 -0.6757 10 14 6.6281 3.2441 -3.4364 11 1 7.7616 4.2035 -3.4370 12 1 7.0336 1.9993 -4.1375 13 1 5.4660 3.8495 -4.1349 14 6 3.7476 -0.6511 -0.0067 15 8 4.7849 -1.2908 -0.0132 16 6 2.3756 -1.1866 -0.0005 17 6 1.9886 -2.5152 -0.0016 18 6 2.9873 -3.5675 -0.1854 19 6 4.0533 -3.3792 -1.0787 20 6 4.9858 -4.3635 -1.2415 21 6 4.8744 -5.5557 -0.5325 22 8 5.8006 -6.5320 -0.7032 23 6 3.8168 -5.7510 0.3506 24 6 2.8805 -4.7724 0.5263 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5135 -0.8902 27 1 -0.3633 -0.5141 0.8898 28 1 5.5921 1.1954 0.5119 29 1 4.4407 2.5529 0.5129 30 1 6.5616 3.1841 0.2390 31 1 0.9490 -2.7750 0.1332 32 1 4.1382 -2.4562 -1.6331 33 1 5.8092 -4.2179 -1.9250 34 1 5.5859 -7.1589 -1.4075 35 1 3.7361 -6.6784 0.8981 36 1 2.0604 -4.9250 1.2122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025940671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:12 Heat of formation + Delta-G solvation = -4.387317 kcal Electronic energy + Delta-G solvation = -21659.114409 eV Core-core repulsion = 18302.276725 eV Total energy + Delta-G solvation = -3356.837684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14832 -40.69511 -38.38775 -37.91494 -36.25604 -34.57643 -33.09446 -32.22693 -30.46643 -29.75315 -27.81387 -26.09456 -24.63521 -23.77165 -22.88289 -20.81945 -20.63158 -19.49409 -19.34034 -17.70648 -17.26962 -16.83835 -16.62773 -16.32931 -16.15307 -15.72731 -15.35134 -15.08907 -14.60557 -14.49257 -14.31827 -14.16124 -13.88304 -13.53340 -13.40072 -13.13403 -13.03071 -12.97504 -12.62406 -12.57519 -12.12736 -11.99301 -11.50630 -11.43151 -10.86676 -10.79348 -10.65784 -10.02209 -9.62965 -9.10708 -8.84599 -6.63604 -1.01528 0.36617 0.44698 1.40981 1.51180 1.51655 1.64183 1.73448 2.00536 2.43926 2.65564 2.91026 3.03055 3.18826 3.25782 3.77036 3.85813 3.93407 4.11438 4.28821 4.38976 4.48786 4.54241 4.58311 4.75426 4.82075 4.92168 4.93042 4.99804 5.18930 5.25251 5.30183 5.37414 5.47191 5.56000 5.64719 5.79142 5.92548 6.25289 6.76963 6.79294 6.98226 7.16787 8.48350 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.005082 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.068571 B = 5508.330115 C = 6931.727409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.126 3.874 3 N -0.287 5.287 4 N -0.463 5.463 5 C 0.275 3.725 6 C -0.625 4.625 7 H 0.039 0.961 8 C -0.024 4.024 9 N -0.921 5.921 10 Si 1.124 2.876 11 H -0.269 1.269 12 H -0.276 1.276 13 H -0.264 1.264 14 C 0.492 3.508 15 O -0.553 6.553 16 C -0.270 4.270 17 C 0.127 3.873 18 C -0.143 4.143 19 C -0.038 4.038 20 C -0.184 4.184 21 C 0.133 3.867 22 O -0.509 6.509 23 C -0.163 4.163 24 C -0.046 4.046 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.007 0.993 29 H 0.020 0.980 30 H 0.255 0.745 31 H 0.220 0.780 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.415 0.585 35 H 0.164 0.836 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.484 -21.303 0.509 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 N -0.095 5.095 4 N -0.279 5.279 5 C 0.155 3.845 6 C -0.663 4.663 7 H 0.057 0.943 8 C -0.223 4.223 9 N -0.557 5.557 10 Si 0.943 3.057 11 H -0.194 1.194 12 H -0.201 1.201 13 H -0.189 1.189 14 C 0.284 3.716 15 O -0.434 6.434 16 C -0.276 4.276 17 C 0.105 3.895 18 C -0.143 4.143 19 C -0.057 4.057 20 C -0.202 4.202 21 C 0.088 3.912 22 O -0.323 6.323 23 C -0.181 4.181 24 C -0.063 4.063 25 H 0.098 0.902 26 H 0.134 0.866 27 H 0.142 0.858 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.237 0.763 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.276 0.724 35 H 0.182 0.818 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -15.345 -19.253 0.067 24.620 hybrid contribution 0.052 -1.096 0.613 1.257 sum -15.294 -20.349 0.680 25.464 Atomic orbital electron populations 1.20655 0.80418 1.05499 1.06417 1.24995 0.98885 0.87072 0.95099 1.75824 0.88563 1.27422 1.17738 1.49596 1.03971 1.06602 1.67732 1.18840 0.81385 0.86727 0.97520 1.22394 1.20948 1.31104 0.91885 0.94290 1.27549 0.92372 0.92361 1.10035 1.70930 1.41497 1.43240 0.99994 0.82883 0.77223 0.77064 0.68552 1.19386 1.20127 1.18897 1.19885 0.91392 0.82831 0.77473 1.90800 1.35696 1.64116 1.52760 1.22047 0.92116 0.96171 1.17255 1.23494 1.01023 0.86782 0.78186 1.19286 0.97335 0.96312 1.01351 1.21038 0.92278 0.95879 0.96490 1.21169 1.00389 0.95466 1.03224 1.18931 0.88741 0.88469 0.95069 1.84692 1.45907 1.41372 1.60340 1.21410 0.93857 1.02239 1.00579 1.21427 0.99286 0.89319 0.96300 0.90187 0.86576 0.85840 0.97492 0.96159 0.93552 0.76320 0.89114 0.86532 0.72448 0.81810 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.36 71.24 0.74 -0.33 16 2 C 0.13 3.93 7.47 45.18 0.34 4.26 16 3 N -0.29 -12.82 12.26 -43.14 -0.53 -13.35 16 4 N -0.46 -24.74 3.54 -469.88 -1.66 -26.40 16 5 C 0.28 16.90 5.34 85.63 0.46 17.36 16 6 C -0.63 -40.10 9.39 25.60 0.24 -39.86 16 7 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 8 C -0.02 -1.51 5.46 84.65 0.46 -1.05 16 9 N -0.92 -59.79 13.65 21.45 0.29 -59.50 16 10 Si 1.12 53.75 29.90 68.60 2.05 55.80 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 C 0.49 24.07 7.33 86.61 0.64 24.71 16 15 O -0.55 -30.21 13.96 -4.89 -0.07 -30.28 16 16 C -0.27 -8.88 6.06 -18.55 -0.11 -8.99 16 17 C 0.13 2.58 9.79 24.39 0.24 2.82 16 18 C -0.14 -3.48 5.47 -20.17 -0.11 -3.59 16 19 C -0.04 -1.27 7.03 22.39 0.16 -1.11 16 20 C -0.18 -5.61 9.92 22.10 0.22 -5.39 16 21 C 0.13 3.15 6.72 22.71 0.15 3.30 16 22 O -0.51 -10.26 13.48 -89.74 -1.21 -11.47 16 23 C -0.16 -2.88 9.92 22.10 0.22 -2.66 16 24 C -0.05 -0.75 9.76 22.39 0.22 -0.53 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.01 0.48 7.92 -2.39 -0.02 0.46 16 29 H 0.02 1.28 8.01 -2.38 -0.02 1.26 16 30 H 0.26 16.82 7.22 -92.71 -0.67 16.15 16 31 H 0.22 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.09 3.75 6.19 -2.91 -0.02 3.73 16 33 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.41 3.57 9.06 -74.06 -0.67 2.90 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -96.08 321.01 3.27 -92.81 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 0.55 Total: 3.45 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 3.85 Total: -11.06 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -1.90 Total: -99.25 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.28 Total: -41.75 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 2.05 Total: 55.80 kcal Total: -96.08 3.27 -92.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025940671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.420 kcal (2) G-P(sol) polarization free energy of solvation -96.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds