Wall clock time and date at job start Tue Mar 31 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21281 * 119.99675 * 2 1 4 4 N 1.34778 * 119.99617 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99436 * 180.02562 * 4 2 1 6 6 H 1.09006 * 109.49785 * 325.06033 * 5 4 2 7 7 C 1.53042 * 109.49637 * 204.99893 * 5 4 2 8 8 C 1.53035 * 109.54021 * 178.64659 * 7 5 4 9 9 C 1.53196 * 109.30995 * 61.36728 * 8 7 5 10 10 N 1.46929 * 108.77486 * 305.36045 * 9 8 7 11 11 C 1.34775 * 120.63328 * 233.60825 * 10 9 8 12 12 O 1.21281 * 119.99736 * 180.02562 * 11 10 9 13 13 C 1.50699 * 119.99881 * 0.02562 * 11 10 9 14 14 S 1.81000 * 109.47077 * 179.97438 * 13 11 10 15 15 C 1.76194 * 100.00066 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00071 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00212 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99743 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47023 * 59.99868 * 19 17 15 21 21 H 1.48496 * 109.47004 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47150 * 299.99941 * 19 17 15 23 23 C 1.46924 * 118.73409 * 53.61317 * 10 9 8 24 24 H 1.08994 * 109.46998 * 239.99451 * 1 2 3 25 25 H 1.08992 * 109.47151 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46695 * 119.99466 * 1 2 3 27 27 H 0.96997 * 120.00158 * 0.02562 * 4 2 1 28 28 H 1.09004 * 109.46156 * 58.62653 * 7 5 4 29 29 H 1.09003 * 109.44815 * 298.66648 * 7 5 4 30 30 H 1.09001 * 109.49969 * 301.41757 * 8 7 5 31 31 H 1.08996 * 109.52938 * 181.33098 * 8 7 5 32 32 H 1.08998 * 109.58804 * 65.15483 * 9 8 7 33 33 H 1.09003 * 109.58394 * 185.58059 * 9 8 7 34 34 H 1.09006 * 109.46697 * 299.99443 * 13 11 10 35 35 H 1.08999 * 109.47275 * 59.99614 * 13 11 10 36 36 H 0.96995 * 120.00201 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.58511 * 186.60055 * 23 10 9 38 38 H 1.08999 * 109.58969 * 66.17655 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0099 -0.3245 -0.5877 7 6 4.1569 -2.4743 -0.6103 8 6 5.6869 -2.4610 -0.6411 9 6 6.2215 -2.3545 0.7906 10 7 5.6207 -1.1777 1.4333 11 6 6.3971 -0.2372 2.0070 12 8 5.8889 0.7293 2.5347 13 6 7.8966 -0.3865 1.9925 14 16 8.6518 1.0268 2.8342 15 6 10.3547 0.6040 2.6743 16 1 10.6399 -0.3065 2.1683 17 6 11.3300 1.4417 3.1976 18 7 10.9825 2.5522 3.8130 19 14 13.1354 0.9938 3.0274 20 1 13.4862 0.8902 1.5882 21 1 13.9684 2.0449 3.6650 22 1 13.3870 -0.3095 3.6933 23 6 4.1574 -1.0460 1.4389 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3633 1.0276 0.0005 26 1 -0.3633 -0.5138 -0.8901 27 1 1.6959 -2.0073 -0.0013 28 1 3.7742 -2.5749 -1.6260 29 1 3.8131 -3.3151 -0.0078 30 1 6.0317 -1.6061 -1.2228 31 1 6.0502 -3.3818 -1.0974 32 1 5.9541 -3.2520 1.3482 33 1 7.3058 -2.2449 0.7685 34 1 8.1750 -1.3068 2.5061 35 1 8.2480 -0.4251 0.9615 36 1 11.6639 3.1374 4.1790 37 1 3.8797 -0.0732 1.8447 38 1 3.7216 -1.8368 2.0495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048795037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:05 Heat of formation + Delta-G solvation = -79.266932 kcal Electronic energy + Delta-G solvation = -20405.521074 eV Core-core repulsion = 17180.880317 eV Total energy + Delta-G solvation = -3224.640757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40079 -39.28810 -37.23721 -34.71512 -32.43652 -32.38155 -31.24941 -29.70119 -28.21688 -25.57103 -25.08514 -23.28173 -21.22483 -20.71690 -19.03872 -17.70799 -17.09169 -16.77321 -16.26115 -15.92626 -15.29093 -14.99125 -14.78291 -14.59988 -14.03026 -13.93237 -13.69602 -13.28239 -13.17755 -12.92614 -12.75194 -12.54736 -12.42272 -11.92267 -11.74542 -11.29627 -11.22546 -11.02147 -11.01613 -10.82927 -10.73694 -10.06749 -9.79849 -9.52111 -9.28571 -9.03593 -8.46243 -8.19104 -6.47162 -6.18683 -3.89383 2.44358 2.73705 3.08288 3.13502 3.25011 3.28783 3.31713 3.64025 4.22499 4.38882 4.55601 4.59953 4.69249 4.82806 4.96368 4.99722 5.07648 5.12422 5.16037 5.24715 5.32066 5.51603 5.53414 5.57329 5.67046 5.69599 5.78733 5.89613 5.97461 6.01338 6.12920 6.18944 6.65652 7.25392 7.57287 7.61576 8.03672 8.37321 8.60241 9.26022 10.88708 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.003470 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.319705 B = 8067.313476 C = 8726.254004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.533 6.533 4 N -0.728 5.728 5 C 0.129 3.871 6 H 0.093 0.907 7 C -0.124 4.124 8 C -0.133 4.133 9 C 0.105 3.895 10 N -0.619 5.619 11 C 0.534 3.466 12 O -0.511 6.511 13 C -0.149 4.149 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.106 3.894 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.400 0.600 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.097 0.903 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 -15.416 -10.283 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.292 3.708 3 O -0.409 6.409 4 N -0.381 5.381 5 C 0.023 3.977 6 H 0.111 0.889 7 C -0.162 4.162 8 C -0.172 4.172 9 C -0.018 4.018 10 N -0.356 5.356 11 C 0.322 3.678 12 O -0.384 6.384 13 C -0.300 4.300 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.019 4.019 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.234 0.766 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.554 -13.006 -9.387 24.526 hybrid contribution 1.481 -1.968 -0.756 2.576 sum -17.074 -14.974 -10.144 24.872 Atomic orbital electron populations 1.21916 0.91604 1.05661 1.04083 1.20899 0.90665 0.83603 0.75611 1.90813 1.70691 1.31243 1.48125 1.46030 1.06839 1.08803 1.76416 1.21339 0.79479 0.99555 0.97281 0.88885 1.21785 0.96519 0.96556 1.01340 1.21900 0.94623 1.03294 0.97334 1.21762 0.99415 0.88128 0.92504 1.48035 1.05700 1.23298 1.58558 1.20372 0.88856 0.81469 0.77122 1.90714 1.74931 1.29698 1.43092 1.23550 0.93546 1.07309 1.05591 1.85463 1.02148 1.23513 1.72234 1.22818 0.91246 1.10954 1.43387 0.91000 1.24994 0.99556 0.94491 0.94544 1.70009 1.34256 1.11171 1.34813 0.86225 0.82538 0.78216 0.78517 1.19948 1.20821 1.19954 1.21821 0.80359 1.03954 0.95746 0.89386 0.88910 0.89524 0.76602 0.91048 0.91174 0.90864 0.90022 0.91390 0.88886 0.89245 0.89223 0.92126 0.88442 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.32 36.01 0.37 -0.66 16 2 C 0.51 5.43 7.91 -10.98 -0.09 5.35 16 3 O -0.53 -8.95 16.75 5.56 0.09 -8.85 16 4 N -0.73 -6.02 5.08 -53.68 -0.27 -6.30 16 5 C 0.13 1.37 2.60 -67.81 -0.18 1.20 16 6 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 7 C -0.12 -0.90 5.35 -26.69 -0.14 -1.04 16 8 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 9 C 0.11 1.11 6.34 -3.71 -0.02 1.08 16 10 N -0.62 -9.18 2.97 -172.77 -0.51 -9.70 16 11 C 0.53 10.74 7.72 -10.99 -0.08 10.65 16 12 O -0.51 -12.55 15.28 5.56 0.08 -12.46 16 13 C -0.15 -3.12 4.50 36.00 0.16 -2.95 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 19 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.11 1.42 6.01 -3.71 -0.02 1.40 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.40 1.80 8.60 -40.82 -0.35 1.44 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 34 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 35 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 36 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -38.32 330.70 -7.67 -45.99 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.58 Total: -1.16 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 0.03 Total: 0.65 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.05 Total: -41.81 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.18 Total: -21.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -38.32 -7.67 -45.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048795037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.275 kcal (2) G-P(sol) polarization free energy of solvation -38.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds