Wall clock time and date at job start Tue Mar 31 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 120.00684 * 2 1 4 4 H 1.48495 * 109.47592 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47128 * 300.00190 * 3 2 1 6 6 H 1.48499 * 109.46980 * 59.99901 * 3 2 1 7 7 C 1.38819 * 119.99365 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99722 * 164.44836 * 7 2 1 9 9 N 1.36931 * 120.00433 * 344.44498 * 7 2 1 10 10 C 1.46992 * 121.32916 * 335.84463 * 9 7 2 11 11 C 1.50355 * 109.15176 * 223.29256 * 10 9 7 12 12 C 1.31271 * 123.40926 * 348.93109 * 11 10 9 13 13 C 1.47598 * 117.81956 * 180.86100 * 12 11 10 14 14 C 1.35762 * 126.68373 * 105.00437 * 13 12 11 15 15 N 1.36503 * 109.71652 * 179.97438 * 14 13 12 16 16 H 0.97008 * 124.89942 * 180.02562 * 15 14 13 17 17 C 1.37809 * 110.20136 * 359.97438 * 15 14 13 18 18 C 1.39161 * 133.25075 * 180.02562 * 17 15 14 19 19 C 1.37959 * 119.76769 * 179.97438 * 18 17 15 20 20 F 1.35100 * 119.71341 * 179.97438 * 19 18 17 21 21 C 1.38987 * 120.57836 * 0.02569 * 19 18 17 22 22 C 1.36683 * 120.45210 * 359.97319 * 21 19 18 23 23 C 1.39381 * 119.82506 * 359.73762 * 22 21 19 24 24 C 1.49991 * 124.36351 * 0.83433 * 12 11 10 25 25 C 1.47291 * 121.33515 * 155.85365 * 9 7 2 26 26 H 0.97005 * 119.99448 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52563 * 103.39437 * 10 9 7 28 28 H 1.08996 * 109.57756 * 343.22406 * 10 9 7 29 29 H 1.08001 * 118.29181 * 168.95648 * 11 10 9 30 30 H 1.08000 * 125.14086 * 359.92603 * 14 13 12 31 31 H 1.08003 * 120.11926 * 359.97438 * 18 17 15 32 32 H 1.08001 * 119.77632 * 179.97438 * 21 19 18 33 33 H 1.08007 * 120.08691 * 179.97438 * 22 21 19 34 34 H 1.08996 * 109.31455 * 101.29807 * 24 12 11 35 35 H 1.08992 * 109.31842 * 220.72766 * 24 12 11 36 36 H 1.09002 * 109.76736 * 358.05991 * 25 9 7 37 37 H 1.09006 * 109.75282 * 237.30007 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6175 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0606 -1.2194 -0.2513 9 7 1.3631 -2.3665 0.3169 10 6 0.1473 -2.3644 1.1430 11 6 0.2331 -3.4778 2.1498 12 6 1.1443 -4.4218 2.1077 13 6 1.1022 -5.4668 3.1492 14 6 0.6743 -6.7463 2.9974 15 7 0.7856 -7.4129 4.1834 16 1 0.5416 -8.3413 4.3233 17 6 1.2959 -6.5770 5.1530 18 6 1.5994 -6.7524 6.4997 19 6 2.1123 -5.6997 7.2290 20 9 2.4061 -5.8711 8.5365 21 6 2.3285 -4.4640 6.6307 22 6 2.0363 -4.2736 5.3091 23 6 1.5230 -5.3267 4.5540 24 6 2.2252 -4.5094 1.0715 25 6 1.8575 -3.6711 -0.1555 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7253 -2.5147 0.5074 28 1 0.0600 -1.4100 1.6621 29 1 -0.4930 -3.5025 2.9489 30 1 0.3013 -7.1720 2.0776 31 1 1.4339 -7.7094 6.9724 32 1 2.7302 -3.6486 7.2139 33 1 2.2062 -3.3107 4.8502 34 1 3.1599 -4.1402 1.4934 35 1 2.3541 -5.5494 0.7721 36 1 2.7386 -3.5269 -0.7809 37 1 1.0781 -4.1757 -0.7265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052823763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:50 Heat of formation + Delta-G solvation = 33.679602 kcal Electronic energy + Delta-G solvation = -21611.638474 eV Core-core repulsion = 18268.824285 eV Total energy + Delta-G solvation = -3342.814189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -49.86790 -42.20039 -39.05835 -37.62892 -35.37861 -33.30928 -31.83925 -31.35539 -30.38800 -29.24146 -27.06079 -24.43538 -24.15188 -23.51238 -22.78679 -21.06424 -19.51435 -19.20362 -18.07653 -17.49374 -16.96110 -16.83721 -16.60765 -16.23055 -15.79086 -15.46945 -15.18224 -15.11467 -14.87501 -14.60059 -14.44683 -13.97427 -13.78907 -13.28261 -13.14325 -12.89378 -12.80916 -12.60186 -12.36432 -12.20799 -12.16864 -11.98063 -11.67230 -11.25322 -10.65702 -10.58787 -9.46021 -9.23449 -8.71408 -8.54558 -7.85297 -5.26529 -0.02511 0.43600 1.33289 1.47573 1.49531 1.59775 1.73488 2.11555 2.53377 2.72640 3.31790 3.38205 3.68597 3.70260 3.91180 4.06949 4.08906 4.26240 4.37870 4.50195 4.56662 4.62726 4.74492 4.85122 4.91689 4.96457 5.03201 5.15817 5.16870 5.27368 5.40014 5.46607 5.53294 5.61760 5.66172 5.70636 5.99652 6.08895 6.27745 6.37264 6.69017 7.16712 7.87212 8.41507 9.23389 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.004164 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.147391 B = 6722.729601 C = 7587.440484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.054 4.054 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.212 3.788 11 C -0.163 4.163 12 C -0.048 4.048 13 C -0.158 4.158 14 C 0.082 3.918 15 N -0.572 5.572 16 H 0.436 0.564 17 C 0.110 3.890 18 C -0.158 4.158 19 C 0.101 3.899 20 F -0.143 7.143 21 C -0.180 4.180 22 C -0.054 4.054 23 C -0.125 4.125 24 C -0.079 4.079 25 C 0.139 3.861 26 H 0.249 0.751 27 H 0.009 0.991 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.207 0.793 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -17.859 10.855 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.087 3.913 11 C -0.183 4.183 12 C -0.049 4.049 13 C -0.164 4.164 14 C -0.045 4.045 15 N -0.176 5.176 16 H 0.277 0.723 17 C 0.001 3.999 18 C -0.180 4.180 19 C 0.080 3.920 20 F -0.122 7.122 21 C -0.200 4.200 22 C -0.072 4.072 23 C -0.130 4.130 24 C -0.118 4.118 25 C 0.014 3.986 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.224 0.776 31 H 0.176 0.824 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.028 -17.888 10.878 21.034 hybrid contribution 0.033 1.050 0.213 1.072 sum 2.061 -16.838 11.092 20.268 Atomic orbital electron populations 1.70190 1.06549 1.25617 1.56314 1.25725 0.96126 1.01269 1.01731 0.85213 0.78599 0.79988 0.76729 1.19105 1.21829 1.21891 1.19562 0.92559 0.85669 1.40756 0.91218 1.44392 1.29627 1.02188 1.57669 1.19309 0.87534 0.94732 0.89706 1.23182 0.99208 0.96652 0.99211 1.18799 0.96701 0.94113 0.95262 1.19292 1.10461 0.94921 0.91774 1.22353 1.00848 0.91073 0.90263 1.41550 1.55595 1.13453 1.06958 0.72285 1.17798 1.00912 0.90562 0.90582 1.19952 1.06404 1.00358 0.91259 1.17229 1.01910 0.94659 0.78181 1.91472 1.91388 1.96101 1.33207 1.20741 1.06430 0.97199 0.95627 1.20198 0.95957 0.98181 0.92887 1.19451 1.05149 0.94186 0.94163 1.20697 0.96089 1.00350 0.94638 1.21146 0.97316 0.85802 0.94364 0.94199 0.97324 0.92845 0.88233 0.77629 0.82377 0.83681 0.86099 0.92559 0.89166 0.92204 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 11.08 21.65 0.24 -56.16 16 2 C -0.05 -3.06 5.00 84.86 0.42 -2.63 16 3 Si 0.97 45.63 29.58 68.60 2.03 47.66 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.26 -14.30 9.70 84.04 0.82 -13.49 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -31.60 3.00 -703.50 -2.11 -33.71 16 10 C 0.21 10.69 5.23 85.43 0.45 11.13 16 11 C -0.16 -6.60 9.58 25.27 0.24 -6.36 16 12 C -0.05 -1.67 5.71 -17.92 -0.10 -1.77 16 13 C -0.16 -4.52 5.40 -18.99 -0.10 -4.63 16 14 C 0.08 1.64 11.80 83.39 0.98 2.62 16 15 N -0.57 -9.49 6.04 -186.78 -1.13 -10.62 16 16 H 0.44 3.66 8.96 -92.70 -0.83 2.83 16 17 C 0.11 2.51 7.26 38.97 0.28 2.79 16 18 C -0.16 -3.29 10.05 22.43 0.23 -3.06 16 19 C 0.10 2.40 7.28 22.38 0.16 2.56 16 20 F -0.14 -3.38 17.26 44.97 0.78 -2.60 16 21 C -0.18 -4.58 9.95 22.09 0.22 -4.36 16 22 C -0.05 -1.56 10.04 22.18 0.22 -1.34 16 23 C -0.12 -3.60 6.36 -20.07 -0.13 -3.72 16 24 C -0.08 -2.69 5.95 29.66 0.18 -2.51 16 25 C 0.14 5.70 6.56 86.26 0.57 6.27 16 26 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 3.04 6.40 -2.39 -0.02 3.03 16 29 H 0.10 3.81 7.94 -2.91 -0.02 3.79 16 30 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 2.42 8.13 -2.39 -0.02 2.40 16 36 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 37 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -68.48 316.42 4.51 -63.97 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.27 Total: 9.97 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 4.44 Total: -18.50 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -3.00 Total: -100.49 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.48 4.51 -63.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052823763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.646 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds