Wall clock time and date at job start Tue Mar 31 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.46765 * 124.35078 * 89.99982 * 5 4 2 7 7 C 1.54472 * 105.47292 * 197.01650 * 6 5 4 8 8 C 1.54628 * 101.76762 * 334.57996 * 7 6 5 9 9 C 1.34414 * 124.34945 * 269.69868 * 5 4 2 10 10 O 1.21279 * 124.94253 * 359.57557 * 9 5 4 11 11 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 12 12 C 1.34777 * 120.00258 * 275.00436 * 11 2 1 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 2 14 14 C 1.50706 * 119.99762 * 179.97438 * 12 11 2 15 15 S 1.81003 * 109.46853 * 179.97438 * 14 12 11 16 16 C 1.76196 * 99.99846 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99637 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47083 * 60.00261 * 20 18 16 22 22 H 1.48506 * 109.46585 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47209 * 299.99712 * 20 18 16 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 28 28 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 29 29 H 1.09001 * 110.24123 * 316.01911 * 6 5 4 30 30 H 1.08999 * 110.24267 * 77.92849 * 6 5 4 31 31 H 1.09004 * 110.97374 * 92.70657 * 7 6 5 32 32 H 1.09004 * 110.96963 * 216.46235 * 7 6 5 33 33 H 1.09004 * 110.48279 * 143.47720 * 8 7 6 34 34 H 1.08996 * 110.48881 * 265.99110 * 8 7 6 35 35 H 0.96999 * 119.99694 * 94.99826 * 11 2 1 36 36 H 1.09000 * 109.47318 * 299.99141 * 14 12 11 37 37 H 1.09000 * 109.47161 * 59.99772 * 14 12 11 38 38 H 0.96995 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.2258 -1.9487 -0.5842 7 6 5.6664 -1.4368 -0.3633 8 6 5.7779 -0.3340 -1.4415 9 6 4.3471 0.0899 -1.6901 10 8 4.0129 1.1095 -2.2555 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0181 2.3571 13 8 1.8589 1.1587 2.4115 14 6 2.6488 -0.7287 3.5878 15 16 2.7105 0.4346 4.9731 16 6 3.3121 -0.6309 6.2408 17 1 3.5201 -1.6677 6.0212 18 6 3.5178 -0.1380 7.5220 19 7 3.2629 1.1252 7.7900 20 14 4.1550 -1.2680 8.8662 21 1 5.4813 -1.8072 8.4721 22 1 4.2871 -0.5045 10.1331 23 1 3.2026 -2.3903 9.0622 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7516 -0.1583 -2.1370 29 1 3.7718 -2.2207 0.3687 30 1 4.2276 -2.8050 -1.2586 31 1 5.7827 -1.0182 0.6364 32 1 6.3934 -2.2296 -0.5396 33 1 6.3681 0.5040 -1.0704 34 1 6.2189 -0.7356 -2.3538 35 1 2.2490 -1.6316 1.1527 36 1 1.9759 -1.5504 3.8327 37 1 3.6480 -1.1212 3.3986 38 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055814731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:25 Heat of formation + Delta-G solvation = -75.338312 kcal Electronic energy + Delta-G solvation = -20608.421391 eV Core-core repulsion = 17383.950992 eV Total energy + Delta-G solvation = -3224.470399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68940 -39.18957 -36.69421 -35.67434 -32.66794 -32.44209 -31.05687 -28.59300 -27.78373 -26.45730 -25.49808 -22.26608 -21.92406 -20.29176 -19.65080 -17.90073 -16.96920 -16.88741 -16.46748 -16.13885 -15.09790 -14.91013 -14.81823 -14.22841 -14.04801 -13.95029 -13.77137 -13.25070 -13.16158 -12.90871 -12.69265 -12.53522 -12.27237 -12.04351 -11.85236 -11.69410 -11.28935 -11.15456 -11.06018 -11.05361 -10.78580 -9.94527 -9.84287 -9.40234 -9.12716 -9.06705 -8.74508 -8.25040 -6.51654 -6.22853 -3.93814 2.42717 2.73891 3.02660 3.10306 3.21738 3.26270 3.29491 3.68697 4.11804 4.18901 4.22209 4.50120 4.64222 4.75180 4.85603 5.08158 5.11987 5.15151 5.16610 5.25484 5.33004 5.40506 5.47202 5.57850 5.58967 5.66837 5.76161 5.84953 6.00831 6.08756 6.11024 6.33522 6.62501 6.89984 7.57188 7.68336 8.00522 8.33122 8.62066 9.22096 10.84485 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.003983 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.833122 B = 7028.987732 C = 7692.176629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.092 0.908 4 C 0.120 3.880 5 N -0.617 5.617 6 C 0.101 3.899 7 C -0.133 4.133 8 C -0.155 4.155 9 C 0.518 3.482 10 O -0.532 6.532 11 N -0.732 5.732 12 C 0.532 3.468 13 O -0.514 6.514 14 C -0.152 4.152 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.392 0.608 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -10.706 -18.966 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.110 0.890 4 C -0.003 4.003 5 N -0.351 5.351 6 C -0.022 4.022 7 C -0.171 4.171 8 C -0.195 4.195 9 C 0.306 3.694 10 O -0.408 6.408 11 N -0.387 5.387 12 C 0.318 3.682 13 O -0.388 6.388 14 C -0.303 4.303 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.638 -8.032 -19.044 20.678 hybrid contribution 0.793 -2.649 0.901 2.908 sum 1.431 -10.681 -18.144 21.103 Atomic orbital electron populations 1.22125 0.94621 1.02133 1.03137 1.21349 0.94281 0.98443 0.84031 0.89023 1.21744 0.78469 1.01676 0.98382 1.48203 1.05851 1.22466 1.58590 1.22155 0.92516 0.89016 0.98483 1.22607 0.95808 0.98587 1.00107 1.22321 0.95139 1.00996 1.01055 1.20949 0.88696 0.82517 0.77264 1.90732 1.82183 1.25017 1.42862 1.46113 1.69554 1.13496 1.09540 1.20309 0.76930 0.87270 0.83725 1.90711 1.48057 1.15731 1.84306 1.23526 1.03436 1.04854 0.98499 1.85454 1.86361 1.12712 0.98675 1.22819 1.51215 0.98074 0.96418 0.91026 1.24985 0.95071 0.95514 0.97926 1.70003 1.45371 1.13235 1.21639 0.86236 0.79289 0.80030 0.80009 1.19937 1.20795 1.19949 0.91647 0.92432 0.91232 0.89795 0.88593 0.90428 0.90946 0.89436 0.89051 0.87884 0.87984 0.77323 0.89350 0.89467 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.13 1.51 2.88 -67.93 -0.20 1.31 16 3 H 0.09 1.47 7.58 -51.93 -0.39 1.07 16 4 C 0.12 1.09 5.51 -4.04 -0.02 1.06 16 5 N -0.62 -6.01 2.75 -172.42 -0.47 -6.48 16 6 C 0.10 0.69 7.07 -3.13 -0.02 0.66 16 7 C -0.13 -0.90 7.18 -25.10 -0.18 -1.08 16 8 C -0.15 -1.31 6.86 -26.74 -0.18 -1.50 16 9 C 0.52 6.36 8.02 -10.86 -0.09 6.28 16 10 O -0.53 -8.83 17.59 5.56 0.10 -8.73 16 11 N -0.73 -9.38 4.50 -53.81 -0.24 -9.63 16 12 C 0.53 9.76 7.81 -10.98 -0.09 9.67 16 13 O -0.51 -11.79 15.52 5.56 0.09 -11.70 16 14 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 17 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 20 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.90 7.92 -51.93 -0.41 0.49 16 29 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 3.78 6.50 -40.82 -0.27 3.52 16 36 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -36.89 334.61 -7.57 -44.46 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.57 Total: 0.58 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 0.00 Total: -0.53 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.02 Total: -41.43 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.18 Total: -20.43 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.89 -7.57 -44.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055814731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.878 kcal (2) G-P(sol) polarization free energy of solvation -36.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds