Wall clock time and date at job start Tue Mar 31 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.46765 * 124.35078 * 89.99982 * 5 4 2 7 7 C 1.54472 * 105.47292 * 197.01650 * 6 5 4 8 8 C 1.54628 * 101.76762 * 334.57996 * 7 6 5 9 9 C 1.34414 * 124.34945 * 269.69868 * 5 4 2 10 10 O 1.21279 * 124.94253 * 359.57557 * 9 5 4 11 11 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 12 12 C 1.34777 * 120.00258 * 275.00436 * 11 2 1 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 2 14 14 C 1.50706 * 119.99762 * 179.97438 * 12 11 2 15 15 S 1.81003 * 109.46853 * 179.97438 * 14 12 11 16 16 C 1.76196 * 99.99846 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99637 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00513 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47083 * 60.00261 * 20 18 16 22 22 H 1.48506 * 109.46585 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47209 * 299.99712 * 20 18 16 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 28 28 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 29 29 H 1.09001 * 110.24123 * 316.01911 * 6 5 4 30 30 H 1.08999 * 110.24267 * 77.92849 * 6 5 4 31 31 H 1.09004 * 110.97374 * 92.70657 * 7 6 5 32 32 H 1.09004 * 110.96963 * 216.46235 * 7 6 5 33 33 H 1.09004 * 110.48279 * 143.47720 * 8 7 6 34 34 H 1.08996 * 110.48881 * 265.99110 * 8 7 6 35 35 H 0.96999 * 119.99694 * 94.99826 * 11 2 1 36 36 H 1.09000 * 109.47318 * 299.99141 * 14 12 11 37 37 H 1.09000 * 109.47161 * 59.99772 * 14 12 11 38 38 H 0.96995 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.2258 -1.9487 -0.5842 7 6 5.6664 -1.4368 -0.3633 8 6 5.7779 -0.3340 -1.4415 9 6 4.3471 0.0899 -1.6901 10 8 4.0129 1.1095 -2.2555 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0181 2.3571 13 8 1.8589 1.1587 2.4115 14 6 2.6488 -0.7287 3.5878 15 16 2.7105 0.4346 4.9731 16 6 3.3121 -0.6309 6.2408 17 1 3.5201 -1.6677 6.0212 18 6 3.5178 -0.1380 7.5220 19 7 3.2629 1.1252 7.7900 20 14 4.1550 -1.2680 8.8662 21 1 5.4813 -1.8072 8.4721 22 1 4.2871 -0.5045 10.1331 23 1 3.2026 -2.3903 9.0622 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7516 -0.1583 -2.1370 29 1 3.7718 -2.2207 0.3687 30 1 4.2276 -2.8050 -1.2586 31 1 5.7827 -1.0182 0.6364 32 1 6.3934 -2.2296 -0.5396 33 1 6.3681 0.5040 -1.0704 34 1 6.2189 -0.7356 -2.3538 35 1 2.2490 -1.6316 1.1527 36 1 1.9759 -1.5504 3.8327 37 1 3.6480 -1.1212 3.3986 38 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055814731.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:25 Heat of formation + Delta-G solvation = -102.505767 kcal Electronic energy + Delta-G solvation = -20609.599460 eV Core-core repulsion = 17383.950992 eV Total energy + Delta-G solvation = -3225.648468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57287 -40.54200 -37.73289 -36.72029 -34.57491 -33.70907 -32.11637 -30.01408 -28.47109 -27.64916 -27.24796 -23.14265 -22.79490 -21.59527 -20.53595 -19.82658 -18.03453 -17.84903 -17.60478 -17.15823 -16.86754 -16.39954 -16.20370 -15.75967 -15.04676 -14.86323 -14.83222 -14.54404 -14.39716 -14.03558 -13.83633 -13.43729 -13.20960 -13.15059 -13.09153 -12.89951 -12.84823 -12.59963 -12.37365 -12.12718 -11.84617 -11.73551 -11.11633 -10.96308 -10.87979 -10.26488 -10.25696 -9.66047 -8.66661 -8.33242 -6.11995 1.27246 1.45199 1.47899 1.51711 1.57088 1.61708 2.01413 2.26794 2.30065 3.01143 3.32478 3.42981 3.63145 3.67504 3.96753 4.02781 4.06656 4.17868 4.24169 4.32982 4.48550 4.49425 4.58154 4.64879 4.72585 4.75385 4.89170 4.98733 5.08544 5.20918 5.23251 5.42474 5.45111 5.57986 6.09359 6.20621 6.49149 7.07874 7.12101 7.26087 8.75775 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.003983 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.833122 B = 7028.987732 C = 7692.176629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.043 0.957 4 C 0.124 3.876 5 N -0.616 5.616 6 C 0.096 3.904 7 C -0.128 4.128 8 C -0.152 4.152 9 C 0.499 3.501 10 O -0.590 6.590 11 N -0.702 5.702 12 C 0.533 3.467 13 O -0.569 6.569 14 C -0.125 4.125 15 S -0.158 6.158 16 C -0.544 4.544 17 H 0.086 0.914 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 0.999 3.001 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.414 0.586 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -15.029 -19.745 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.062 0.938 4 C 0.001 3.999 5 N -0.348 5.348 6 C -0.026 4.026 7 C -0.165 4.165 8 C -0.192 4.192 9 C 0.289 3.711 10 O -0.471 6.471 11 N -0.357 5.357 12 C 0.319 3.681 13 O -0.448 6.448 14 C -0.276 4.276 15 S 0.069 5.931 16 C -0.692 4.692 17 H 0.104 0.896 18 C -0.192 4.192 19 N -0.550 5.550 20 Si 0.820 3.180 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.186 1.186 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.147 0.853 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.287 -12.451 -19.850 23.467 hybrid contribution 0.562 -1.330 1.012 1.763 sum 1.849 -13.780 -18.839 23.414 Atomic orbital electron populations 1.22065 0.93233 1.03811 1.02251 1.21398 0.95342 0.96433 0.84756 0.93844 1.21799 0.78431 1.03551 0.96074 1.48409 1.06117 1.22686 1.57577 1.22475 0.91854 0.88748 0.99501 1.22649 0.96943 0.98647 0.98310 1.22364 0.92596 1.01402 1.02835 1.21713 0.90705 0.82052 0.76633 1.90692 1.83339 1.27446 1.45582 1.45802 1.67627 1.14232 1.08048 1.20164 0.76646 0.86558 0.84774 1.90705 1.50731 1.18131 1.85187 1.23347 1.05583 1.03040 0.95676 1.85719 1.86829 1.17493 1.03036 1.23169 1.50909 0.98448 0.96670 0.89615 1.26142 0.95059 0.97143 1.00807 1.70187 1.46898 1.15646 1.22290 0.85003 0.79186 0.77714 0.76083 1.18427 1.20687 1.18551 0.90011 0.89337 0.94736 0.85265 0.88975 0.89655 0.87418 0.91296 0.85778 0.88964 0.85533 0.74762 0.86998 0.86973 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.48 71.98 0.68 -2.46 16 2 C 0.13 2.95 2.88 44.99 0.13 3.08 16 3 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 4 C 0.12 1.93 5.51 86.38 0.48 2.41 16 5 N -0.62 -10.60 2.75 -818.00 -2.25 -12.85 16 6 C 0.10 0.90 7.07 86.83 0.61 1.51 16 7 C -0.13 -1.34 7.18 31.65 0.23 -1.11 16 8 C -0.15 -2.36 6.86 30.59 0.21 -2.15 16 9 C 0.50 12.09 8.02 87.90 0.71 12.79 16 10 O -0.59 -20.43 17.59 -3.03 -0.05 -20.48 16 11 N -0.70 -16.72 4.50 -442.54 -1.99 -18.71 16 12 C 0.53 19.45 7.81 87.66 0.68 20.14 16 13 O -0.57 -27.31 15.52 -3.03 -0.05 -27.36 16 14 C -0.13 -4.76 6.16 71.24 0.44 -4.32 16 15 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 16 C -0.54 -30.50 9.50 67.96 0.65 -29.85 16 17 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.74 5.49 84.86 0.47 1.20 16 19 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 20 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.60 7.92 -2.38 -0.02 1.58 16 29 H 0.09 0.68 5.95 -2.39 -0.01 0.67 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.12 0.53 8.14 -2.38 -0.02 0.52 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.41 6.35 6.50 -92.71 -0.60 5.75 16 36 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -87.27 334.61 2.55 -84.72 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.46 Total: 14.40 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.28 Total: 1.24 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.95 Total: -87.43 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -0.10 Total: -47.84 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -87.27 2.55 -84.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055814731.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.781 kcal (2) G-P(sol) polarization free energy of solvation -87.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds