Wall clock time and date at job start Tue Mar 31 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37099 * 120.00213 * 2 1 4 4 H 1.07997 * 119.99856 * 204.39946 * 3 2 1 5 5 C 1.38945 * 119.99732 * 24.38932 * 3 2 1 6 6 N 1.31418 * 120.00441 * 12.66373 * 5 3 2 7 7 Si 1.86803 * 120.00033 * 192.65659 * 5 3 2 8 8 H 1.48497 * 109.46966 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46876 * 120.00241 * 7 5 3 10 10 H 1.48497 * 109.47469 * 240.00416 * 7 5 3 11 11 C 1.34781 * 120.00260 * 179.97438 * 2 1 3 12 12 O 1.21283 * 120.00294 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99489 * 0.02562 * 11 2 1 14 14 C 1.50703 * 109.46897 * 179.97438 * 13 11 2 15 15 C 1.34552 * 126.08108 * 124.99972 * 14 13 11 16 16 O 1.34766 * 107.27375 * 180.23114 * 15 14 13 17 17 C 1.34428 * 107.69272 * 359.57561 * 16 15 14 18 18 C 1.47833 * 125.72553 * 180.16073 * 17 16 15 19 19 C 1.39568 * 120.14381 * 180.02562 * 18 17 16 20 20 C 1.37962 * 119.85039 * 179.75076 * 19 18 17 21 21 C 1.38356 * 120.14515 * 0.55140 * 20 19 18 22 22 C 1.38354 * 120.29083 * 359.70273 * 21 20 19 23 23 C 1.37966 * 120.14566 * 0.02562 * 22 21 20 24 24 N 1.31219 * 108.54921 * 0.42850 * 17 16 15 25 25 H 1.09001 * 109.47304 * 265.86163 * 1 2 3 26 26 H 1.09000 * 109.47141 * 25.86430 * 1 2 3 27 27 H 1.09001 * 109.46932 * 145.86800 * 1 2 3 28 28 H 0.96990 * 120.00264 * 179.97438 * 6 5 3 29 29 H 1.08996 * 109.47391 * 60.00055 * 13 11 2 30 30 H 1.08993 * 109.47590 * 299.99551 * 13 11 2 31 31 H 1.08005 * 126.35939 * 359.96085 * 15 14 13 32 32 H 1.08004 * 120.06875 * 0.02562 * 19 18 17 33 33 H 1.07997 * 119.92493 * 180.28037 * 20 19 18 34 34 H 1.07997 * 119.85144 * 179.71956 * 21 20 19 35 35 H 1.08005 * 119.92672 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.06833 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3864 5 6 1.5488 2.3369 0.4969 6 7 0.4347 2.2491 1.1884 7 14 2.3235 4.0073 0.1822 8 1 3.5638 3.8352 -0.6160 9 1 1.3682 4.8628 -0.5666 10 1 2.6541 4.6518 1.4785 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 6 2.3647 -3.6177 0.0005 15 6 2.4056 -4.6254 0.8913 16 8 3.4272 -5.4303 0.5384 17 6 3.9922 -4.9129 -0.5662 18 6 5.1469 -5.4822 -1.2927 19 6 5.6415 -4.8453 -2.4319 20 6 6.7227 -5.3792 -3.1023 21 6 7.3093 -6.5494 -2.6542 22 6 6.8206 -7.1885 -1.5287 23 6 5.7435 -6.6622 -0.8459 24 7 3.3503 -3.8146 -0.8881 25 1 -0.3634 -0.0742 1.0250 26 1 -0.3633 0.9247 -0.4483 27 1 -0.3633 -0.8507 -0.5766 28 1 0.0149 3.0516 1.5355 29 1 0.7591 -2.5302 -0.8896 30 1 0.7585 -2.5299 0.8902 31 1 1.7453 -4.7612 1.7351 32 1 5.1816 -3.9342 -2.7852 33 1 7.1092 -4.8849 -3.9813 34 1 8.1526 -6.9655 -3.1853 35 1 7.2833 -8.1015 -1.1839 36 1 5.3632 -7.1619 0.0328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071792345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:23 Heat of formation + Delta-G solvation = 26.618509 kcal Electronic energy + Delta-G solvation = -21315.853015 eV Core-core repulsion = 17960.359844 eV Total energy + Delta-G solvation = -3355.493171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.99116 -39.07752 -38.33855 -35.00290 -34.29409 -32.61269 -31.61415 -31.08559 -30.11286 -27.55892 -26.05189 -24.23528 -23.76253 -22.81597 -21.14349 -20.77533 -18.89702 -17.55240 -16.80926 -16.48269 -16.36519 -15.77607 -15.54316 -15.06484 -14.58320 -14.29728 -14.20282 -13.85396 -13.55478 -13.38503 -12.97167 -12.57704 -12.19740 -12.14356 -11.57217 -11.41698 -11.25960 -11.20763 -11.17389 -10.85318 -10.75942 -10.28335 -10.23096 -10.08727 -9.56039 -9.09514 -8.96417 -8.35823 -8.01035 -7.58532 -6.27287 -3.82591 0.69500 1.27011 1.99022 2.85848 3.02977 3.18610 3.28590 3.36318 3.78328 3.97290 4.09355 4.19001 4.75063 4.80637 4.87893 4.98246 5.09770 5.17837 5.26244 5.29462 5.43093 5.59802 5.81948 5.85048 5.89771 5.98603 6.09275 6.10914 6.25834 6.34368 6.39845 6.44124 6.60126 6.77967 6.87936 7.22082 7.62323 8.05003 8.21351 8.56158 9.26380 9.48594 10.06721 10.78156 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.025173 B = 0.003573 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.057261 B = 7833.956618 C = 8653.261281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.452 5.452 3 C -0.301 4.301 4 H 0.097 0.903 5 C 0.028 3.972 6 N -0.885 5.885 7 Si 0.924 3.076 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.455 3.545 12 O -0.570 6.570 13 C -0.057 4.057 14 C 0.032 3.968 15 C -0.081 4.081 16 O -0.202 6.202 17 C 0.211 3.789 18 C -0.004 4.004 19 C -0.070 4.070 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.095 4.095 24 N -0.429 5.429 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.266 0.734 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.217 0.783 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -17.108 -4.327 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.173 5.173 3 C -0.429 4.429 4 H 0.115 0.885 5 C -0.174 4.174 6 N -0.525 5.525 7 Si 0.751 3.249 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.242 3.758 12 O -0.453 6.453 13 C -0.098 4.098 14 C -0.091 4.091 15 C -0.151 4.151 16 O -0.089 6.089 17 C 0.007 3.993 18 C -0.005 4.005 19 C -0.089 4.089 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.142 4.142 23 C -0.115 4.115 24 N -0.158 5.158 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.903 -16.593 -4.726 17.936 hybrid contribution -0.249 0.618 0.802 1.043 sum 4.654 -15.975 -3.923 17.096 Atomic orbital electron populations 1.21476 0.81379 0.99932 1.00456 1.43550 1.05338 1.04618 1.63744 1.19676 1.00557 0.84119 1.38545 0.88535 1.25322 0.96709 1.00040 0.95330 1.69995 1.19388 1.29363 1.33798 0.85890 0.79198 0.81628 0.78167 1.19261 1.20711 1.20824 1.19761 0.88110 0.84270 0.83709 1.90555 1.13718 1.86776 1.54231 1.20020 0.95422 0.90497 1.03837 1.21272 0.97126 0.97209 0.93458 1.24790 0.93650 0.93248 1.03410 1.84414 1.37944 1.47764 1.38781 1.23765 0.97722 0.91174 0.86628 1.17301 0.92138 0.95731 0.95374 1.21303 0.95223 0.99528 0.92889 1.21126 0.96065 0.96325 1.00409 1.21314 0.99570 0.95447 0.96418 1.21026 0.96731 1.00424 0.96028 1.21222 0.95901 0.94540 0.99791 1.70548 1.05839 1.12186 1.27189 0.93081 0.90714 0.95668 0.92435 0.88654 0.88530 0.76703 0.84117 0.85186 0.85722 0.85485 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.44 59.85 0.51 2.98 16 2 N -0.45 -11.83 3.01 -122.20 -0.37 -12.20 16 3 C -0.30 -8.62 9.24 -14.93 -0.14 -8.75 16 4 H 0.10 2.92 7.45 -52.49 -0.39 2.53 16 5 C 0.03 0.77 5.04 -17.47 -0.09 0.68 16 6 N -0.89 -23.90 10.83 55.50 0.60 -23.30 16 7 Si 0.92 21.21 29.57 -169.99 -5.03 16.18 16 8 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.45 11.46 7.62 -10.98 -0.08 11.37 16 12 O -0.57 -16.64 15.29 5.56 0.08 -16.55 16 13 C -0.06 -1.08 4.87 -29.03 -0.14 -1.22 16 14 C 0.03 0.60 5.87 -82.88 -0.49 0.11 16 15 C -0.08 -1.25 12.06 29.43 0.35 -0.90 16 16 O -0.20 -3.28 10.52 4.09 0.04 -3.24 16 17 C 0.21 3.72 7.90 -13.89 -0.11 3.61 16 18 C 0.00 -0.06 5.87 -104.98 -0.62 -0.68 16 19 C -0.07 -0.97 9.69 -39.19 -0.38 -1.35 16 20 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 21 C -0.11 -1.01 10.04 -39.50 -0.40 -1.40 16 22 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 23 C -0.10 -1.12 9.72 -39.19 -0.38 -1.50 16 24 N -0.43 -8.77 10.29 -7.96 -0.08 -8.85 16 25 H 0.05 1.14 7.83 -51.93 -0.41 0.74 16 26 H 0.07 1.77 6.80 -51.93 -0.35 1.41 16 27 H 0.02 0.45 6.61 -51.93 -0.34 0.11 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.10 1.62 7.41 -51.93 -0.38 1.23 16 30 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 31 H 0.22 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.14 2.12 7.83 -52.48 -0.41 1.71 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 36 H 0.13 1.35 7.90 -52.49 -0.41 0.94 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -34.96 317.71 -6.67 -41.63 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -3.95 Total: 1.87 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.76 Total: -0.33 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.15 Total: -44.34 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.13 Total: -19.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.96 -6.67 -41.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071792345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.249 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds