Wall clock time and date at job start Tue Mar 31 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86803 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47100 * 239.99825 * 3 2 1 5 5 H 1.48497 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47007 * 119.99917 * 3 2 1 7 7 C 1.40248 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 197.86747 * 7 2 1 9 9 C 1.41095 * 119.99881 * 17.86775 * 7 2 1 10 10 C 1.40897 * 120.09370 * 204.64347 * 9 7 2 11 11 C 1.36302 * 119.89576 * 180.02562 * 10 9 7 12 12 C 1.40073 * 120.10045 * 0.02562 * 11 10 9 13 13 C 1.47504 * 119.90147 * 179.97438 * 12 11 10 14 14 O 1.21505 * 119.99714 * 359.97438 * 13 12 11 15 15 O 1.34773 * 119.99955 * 180.27694 * 13 12 11 16 16 C 1.45203 * 116.99972 * 179.72574 * 15 13 12 17 17 C 1.52996 * 109.46977 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.46991 * 179.97438 * 17 16 15 19 19 C 1.34944 * 126.03863 * 125.00183 * 18 17 16 20 20 C 1.35320 * 107.74746 * 179.97438 * 19 18 17 21 21 C 1.39863 * 107.92167 * 359.97438 * 20 19 18 22 22 N 1.30845 * 108.20368 * 359.74068 * 21 20 19 23 23 C 1.40066 * 120.19801 * 0.26943 * 12 11 10 24 24 C 1.36308 * 120.09994 * 359.44507 * 23 12 11 25 25 H 0.97000 * 120.00090 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.05795 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.95140 * 179.97438 * 11 10 9 28 28 H 1.09004 * 109.47027 * 299.99535 * 16 15 13 29 29 H 1.09001 * 109.47355 * 59.99718 * 16 15 13 30 30 H 1.08997 * 109.47766 * 299.99647 * 17 16 15 31 31 H 1.08999 * 109.47483 * 60.00117 * 17 16 15 32 32 H 1.07997 * 126.12960 * 359.95198 * 19 18 17 33 33 H 1.08002 * 126.03941 * 180.02562 * 20 19 18 34 34 H 1.07997 * 125.90352 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.94864 * 179.72941 * 23 12 11 36 36 H 1.08005 * 120.04870 * 180.27027 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6964 1.2126 7 6 2.0075 -1.2146 -0.0005 8 1 3.0485 -1.2372 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8268 -3.6495 0.0895 11 6 1.1918 -4.7988 -0.2761 12 6 0.0703 -4.7458 -1.1137 13 6 -0.6132 -5.9924 -1.5071 14 8 -0.2029 -7.0630 -1.1051 15 8 -1.6890 -5.9441 -2.3175 16 6 -2.3075 -7.2102 -2.6681 17 6 -3.5044 -6.9560 -3.5866 18 7 -4.1280 -8.2334 -3.9409 19 6 -5.4255 -8.5595 -3.7642 20 6 -5.5991 -9.8221 -4.2189 21 6 -4.3656 -10.2833 -4.6901 22 7 -3.4843 -9.3297 -4.5294 23 6 -0.4003 -3.5132 -1.5838 24 6 0.2249 -2.3584 -1.2186 25 1 -0.4850 0.8400 -0.0004 26 1 2.6916 -3.6914 0.7350 27 1 1.5543 -5.7518 0.0798 28 1 -1.5811 -7.8392 -3.1828 29 1 -2.6457 -7.7127 -1.7619 30 1 -4.2307 -6.3272 -3.0716 31 1 -3.1666 -6.4533 -4.4929 32 1 -6.1886 -7.9263 -3.3362 33 1 -6.5265 -10.3756 -4.2187 34 1 -4.1747 -11.2565 -5.1174 35 1 -1.2627 -3.4774 -2.2330 36 1 -0.1413 -1.4080 -1.5781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089885033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:57 Heat of formation + Delta-G solvation = 5.444727 kcal Electronic energy + Delta-G solvation = -20635.942603 eV Core-core repulsion = 17279.531268 eV Total energy + Delta-G solvation = -3356.411335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27622 -39.65387 -37.54371 -35.94850 -34.01216 -33.85098 -30.58110 -30.28139 -29.56187 -28.82582 -26.21530 -23.91022 -22.24066 -21.26010 -21.01432 -20.68368 -20.02081 -17.61754 -17.53576 -16.63222 -16.43882 -16.14313 -15.50661 -15.01613 -14.50522 -14.10689 -13.99236 -13.52992 -13.35268 -13.30057 -12.93211 -12.78897 -12.22291 -12.10122 -11.97792 -11.70760 -11.44886 -11.33150 -11.06900 -10.80984 -10.74751 -10.23370 -10.20359 -9.67729 -9.63829 -9.51418 -9.41824 -8.79183 -7.81280 -7.69673 -7.14909 -4.72986 1.71355 1.99626 2.17581 2.69692 2.84246 2.88841 2.92026 2.97929 3.38300 3.57170 3.66636 4.38527 4.41776 4.66594 4.74176 4.87970 5.08818 5.32522 5.45786 5.52749 5.56012 5.65687 5.83131 5.95377 6.14664 6.20967 6.47594 6.69023 6.74281 6.81073 6.92827 6.93787 7.04468 7.35787 7.53693 7.61260 7.72617 7.77687 7.95226 8.29641 8.51049 8.63772 8.65551 9.76277 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.037260 B = 0.002718 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.294101 B =10300.671300 C =10872.970449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.017 4.017 12 C -0.275 4.275 13 C 0.517 3.483 14 O -0.549 6.549 15 O -0.360 6.360 16 C 0.059 3.941 17 C 0.136 3.864 18 N -0.369 5.369 19 C 0.058 3.942 20 C -0.277 4.277 21 C 0.043 3.957 22 N -0.293 5.293 23 C -0.043 4.043 24 C -0.185 4.185 25 H 0.290 0.710 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.175 0.825 33 H 0.148 0.852 34 H 0.183 0.817 35 H 0.101 0.899 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 -6.947 -6.083 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.258 4.258 11 C -0.036 4.036 12 C -0.278 4.278 13 C 0.369 3.631 14 O -0.442 6.442 15 O -0.277 6.277 16 C -0.016 4.016 17 C 0.015 3.985 18 N -0.153 5.153 19 C -0.088 4.088 20 C -0.307 4.307 21 C -0.143 4.143 22 N -0.115 5.115 23 C -0.061 4.061 24 C -0.204 4.204 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.192 0.808 33 H 0.165 0.835 34 H 0.200 0.800 35 H 0.120 0.880 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.426 -6.596 -6.071 12.303 hybrid contribution -0.702 0.297 0.226 0.795 sum -9.128 -6.299 -5.845 12.536 Atomic orbital electron populations 1.69727 1.08012 1.30514 1.30290 1.26168 0.94868 1.02115 0.91842 0.86208 0.80212 0.79131 0.80478 1.18323 1.19921 1.18537 1.19916 0.98482 0.91174 1.36413 0.89443 1.17849 0.90301 0.92182 0.86877 1.20690 1.04707 0.92418 1.08022 1.20352 0.92451 0.97449 0.93300 1.18174 1.04546 0.89055 1.15999 1.21589 0.76690 0.90340 0.74446 1.90717 1.65686 1.32146 1.55667 1.86498 1.44166 1.33472 1.63613 1.22863 0.94520 0.85570 0.98669 1.21457 0.95978 0.80605 1.00493 1.48571 1.06780 1.12705 1.47230 1.22632 0.87208 0.97689 1.01315 1.21520 0.99921 0.96405 1.12854 1.23932 0.91459 0.98891 1.00020 1.77432 1.21677 0.94669 1.17692 1.20628 0.97146 0.91885 0.96485 1.21013 1.00080 0.97071 1.02243 0.89888 0.87995 0.87924 0.90318 0.91396 0.87311 0.88398 0.80757 0.83473 0.80010 0.88042 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.75 10.96 55.56 0.61 -17.14 16 2 C 0.07 1.64 5.14 -17.31 -0.09 1.55 16 3 Si 0.92 16.66 29.60 -169.99 -5.03 11.63 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 7 C -0.43 -10.43 9.04 -37.74 -0.34 -10.77 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.27 5.57 -106.80 -0.60 2.68 16 10 C -0.24 -5.65 9.73 -39.27 -0.38 -6.04 16 11 C -0.02 -0.39 9.52 -39.59 -0.38 -0.77 16 12 C -0.28 -6.40 5.89 -104.75 -0.62 -7.02 16 13 C 0.52 11.42 7.89 34.51 0.27 11.69 16 14 O -0.55 -13.07 16.11 -19.27 -0.31 -13.38 16 15 O -0.36 -6.72 9.45 -40.69 -0.38 -7.10 16 16 C 0.06 0.92 5.67 37.16 0.21 1.13 16 17 C 0.14 1.58 6.89 -4.04 -0.03 1.55 16 18 N -0.37 -4.50 3.68 -61.37 -0.23 -4.72 16 19 C 0.06 0.55 11.45 -17.22 -0.20 0.36 16 20 C -0.28 -2.61 10.80 -40.01 -0.43 -3.04 16 21 C 0.04 0.47 12.03 -17.36 -0.21 0.26 16 22 N -0.29 -4.04 12.43 30.62 0.38 -3.66 16 23 C -0.04 -0.97 9.55 -39.59 -0.38 -1.35 16 24 C -0.18 -4.50 8.63 -39.27 -0.34 -4.84 16 25 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 26 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.11 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 36 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -29.30 323.63 -7.64 -36.93 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.05 Total: 7.18 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -3.50 Total: -14.61 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.76 Total: -25.52 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.69 Total: -20.48 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.30 -7.64 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089885033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.378 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds