Wall clock time and date at job start Tue Mar 31 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86803 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47100 * 239.99825 * 3 2 1 5 5 H 1.48497 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47007 * 119.99917 * 3 2 1 7 7 C 1.40248 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 197.86747 * 7 2 1 9 9 C 1.41095 * 119.99881 * 17.86775 * 7 2 1 10 10 C 1.40897 * 120.09370 * 204.64347 * 9 7 2 11 11 C 1.36302 * 119.89576 * 180.02562 * 10 9 7 12 12 C 1.40073 * 120.10045 * 0.02562 * 11 10 9 13 13 C 1.47504 * 119.90147 * 179.97438 * 12 11 10 14 14 O 1.21505 * 119.99714 * 359.97438 * 13 12 11 15 15 O 1.34773 * 119.99955 * 180.27694 * 13 12 11 16 16 C 1.45203 * 116.99972 * 179.72574 * 15 13 12 17 17 C 1.52996 * 109.46977 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.46991 * 179.97438 * 17 16 15 19 19 C 1.34944 * 126.03863 * 125.00183 * 18 17 16 20 20 C 1.35320 * 107.74746 * 179.97438 * 19 18 17 21 21 C 1.39863 * 107.92167 * 359.97438 * 20 19 18 22 22 N 1.30845 * 108.20368 * 359.74068 * 21 20 19 23 23 C 1.40066 * 120.19801 * 0.26943 * 12 11 10 24 24 C 1.36308 * 120.09994 * 359.44507 * 23 12 11 25 25 H 0.97000 * 120.00090 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.05795 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.95140 * 179.97438 * 11 10 9 28 28 H 1.09004 * 109.47027 * 299.99535 * 16 15 13 29 29 H 1.09001 * 109.47355 * 59.99718 * 16 15 13 30 30 H 1.08997 * 109.47766 * 299.99647 * 17 16 15 31 31 H 1.08999 * 109.47483 * 60.00117 * 17 16 15 32 32 H 1.07997 * 126.12960 * 359.95198 * 19 18 17 33 33 H 1.08002 * 126.03941 * 180.02562 * 20 19 18 34 34 H 1.07997 * 125.90352 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.94864 * 179.72941 * 23 12 11 36 36 H 1.08005 * 120.04870 * 180.27027 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7464 0.0006 6 1 3.0941 1.6964 1.2126 7 6 2.0075 -1.2146 -0.0005 8 1 3.0485 -1.2372 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8268 -3.6495 0.0895 11 6 1.1918 -4.7988 -0.2761 12 6 0.0703 -4.7458 -1.1137 13 6 -0.6132 -5.9924 -1.5071 14 8 -0.2029 -7.0630 -1.1051 15 8 -1.6890 -5.9441 -2.3175 16 6 -2.3075 -7.2102 -2.6681 17 6 -3.5044 -6.9560 -3.5866 18 7 -4.1280 -8.2334 -3.9409 19 6 -5.4255 -8.5595 -3.7642 20 6 -5.5991 -9.8221 -4.2189 21 6 -4.3656 -10.2833 -4.6901 22 7 -3.4843 -9.3297 -4.5294 23 6 -0.4003 -3.5132 -1.5838 24 6 0.2249 -2.3584 -1.2186 25 1 -0.4850 0.8400 -0.0004 26 1 2.6916 -3.6914 0.7350 27 1 1.5543 -5.7518 0.0798 28 1 -1.5811 -7.8392 -3.1828 29 1 -2.6457 -7.7127 -1.7619 30 1 -4.2307 -6.3272 -3.0716 31 1 -3.1666 -6.4533 -4.4929 32 1 -6.1886 -7.9263 -3.3362 33 1 -6.5265 -10.3756 -4.2187 34 1 -4.1747 -11.2565 -5.1174 35 1 -1.2627 -3.4774 -2.2330 36 1 -0.1413 -1.4080 -1.5781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089885033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:56 Heat of formation + Delta-G solvation = -9.293136 kcal Electronic energy + Delta-G solvation = -20636.581684 eV Core-core repulsion = 17279.531268 eV Total energy + Delta-G solvation = -3357.050417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08646 -41.30919 -39.31113 -37.56302 -35.77015 -34.87748 -32.25956 -31.39328 -31.20278 -29.88721 -27.93487 -25.13772 -23.83486 -22.83793 -22.06877 -21.71526 -21.52545 -19.41680 -18.83731 -17.98437 -17.81673 -17.59198 -17.12979 -16.16311 -15.79527 -15.49004 -15.27414 -14.95825 -14.87867 -14.45456 -14.24163 -13.96338 -13.74708 -13.61024 -13.34430 -13.09215 -12.98689 -12.86444 -12.68197 -12.40495 -11.86305 -11.80328 -11.52946 -11.44693 -11.32484 -11.13974 -10.48189 -9.64962 -9.57423 -9.55266 -8.86194 -6.56656 0.20494 0.89749 1.12441 1.24017 1.36865 1.42181 1.53213 1.85267 1.95330 2.06898 2.14870 2.66208 3.43420 3.60524 3.66531 3.95709 4.03224 4.09109 4.21000 4.34504 4.38758 4.40559 4.55566 4.76103 4.88183 4.91530 4.96951 5.09907 5.14842 5.20278 5.31114 5.54255 5.72212 5.78827 5.89277 5.94625 6.07955 6.13553 6.47538 6.68699 6.73734 6.80482 6.92930 8.08331 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.037260 B = 0.002718 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.294101 B =10300.671300 C =10872.970449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.457 4.457 8 H 0.093 0.907 9 C 0.105 3.895 10 C -0.250 4.250 11 C -0.023 4.023 12 C -0.292 4.292 13 C 0.521 3.479 14 O -0.572 6.572 15 O -0.353 6.353 16 C 0.062 3.938 17 C 0.145 3.855 18 N -0.385 5.385 19 C 0.058 3.942 20 C -0.282 4.282 21 C 0.039 3.961 22 N -0.349 5.349 23 C -0.037 4.037 24 C -0.203 4.203 25 H 0.301 0.699 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.211 0.789 33 H 0.175 0.825 34 H 0.206 0.794 35 H 0.123 0.877 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 -6.096 -6.391 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.483 4.483 8 H 0.111 0.889 9 C 0.101 3.899 10 C -0.270 4.270 11 C -0.042 4.042 12 C -0.294 4.294 13 C 0.374 3.626 14 O -0.467 6.467 15 O -0.269 6.269 16 C -0.013 4.013 17 C 0.024 3.976 18 N -0.169 5.169 19 C -0.087 4.087 20 C -0.311 4.311 21 C -0.147 4.147 22 N -0.171 5.171 23 C -0.055 4.055 24 C -0.222 4.222 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.120 0.880 32 H 0.228 0.772 33 H 0.192 0.808 34 H 0.223 0.777 35 H 0.141 0.859 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.836 -5.768 -6.392 13.072 hybrid contribution -0.370 -0.056 0.311 0.486 sum -10.206 -5.824 -6.081 13.230 Atomic orbital electron populations 1.69746 1.09395 1.32161 1.29732 1.27031 0.95577 1.05100 0.90752 0.85101 0.78843 0.74605 0.80451 1.18141 1.18744 1.18031 1.20244 0.98985 0.91998 1.37050 0.88880 1.18204 0.91025 0.93079 0.87588 1.20863 1.05314 0.92315 1.08472 1.20503 0.92671 0.97638 0.93397 1.18389 1.04901 0.89864 1.16286 1.21395 0.77213 0.89522 0.74491 1.90699 1.66571 1.32784 1.56671 1.86455 1.42889 1.35161 1.62419 1.23040 0.95335 0.83908 0.99046 1.21442 0.95098 0.81172 0.99930 1.48632 1.07679 1.12558 1.48013 1.23335 0.86779 0.98283 1.00279 1.21935 1.00397 0.96577 1.12200 1.24498 0.91778 0.99285 0.99095 1.77384 1.23642 0.96093 1.19940 1.20794 0.97367 0.91242 0.96143 1.21037 1.00750 0.97322 1.03101 0.88779 0.86850 0.87330 0.92268 0.91946 0.84172 0.88009 0.77186 0.80802 0.77747 0.85905 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.31 10.96 21.88 0.24 -36.07 16 2 C 0.04 1.60 5.14 85.36 0.44 2.04 16 3 Si 0.99 33.04 29.60 68.60 2.03 35.07 16 4 H -0.26 -8.47 7.11 99.48 0.71 -7.77 16 5 H -0.26 -8.25 7.11 99.48 0.71 -7.54 16 6 H -0.26 -8.32 7.11 99.48 0.71 -7.61 16 7 C -0.46 -22.07 9.04 23.46 0.21 -21.85 16 8 H 0.09 4.24 7.91 -2.91 -0.02 4.21 16 9 C 0.10 5.29 5.57 -21.28 -0.12 5.17 16 10 C -0.25 -12.04 9.73 22.47 0.22 -11.82 16 11 C -0.02 -1.11 9.52 22.26 0.21 -0.90 16 12 C -0.29 -13.68 5.89 -19.95 -0.12 -13.80 16 13 C 0.52 23.12 7.89 70.27 0.55 23.67 16 14 O -0.57 -27.60 16.11 19.82 0.32 -27.28 16 15 O -0.35 -12.99 9.45 -56.84 -0.54 -13.53 16 16 C 0.06 1.91 5.67 71.98 0.41 2.32 16 17 C 0.15 3.15 6.89 86.38 0.59 3.74 16 18 N -0.38 -8.83 3.68 -348.07 -1.28 -10.11 16 19 C 0.06 0.97 11.45 83.54 0.96 1.92 16 20 C -0.28 -4.62 10.80 21.99 0.24 -4.38 16 21 C 0.04 0.80 12.03 85.23 1.02 1.82 16 22 N -0.35 -9.48 12.43 -57.03 -0.71 -10.19 16 23 C -0.04 -1.68 9.55 22.26 0.21 -1.47 16 24 C -0.20 -9.99 8.63 22.47 0.19 -9.80 16 25 H 0.30 12.25 8.29 -92.71 -0.77 11.49 16 26 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 27 H 0.11 4.90 7.63 -2.91 -0.02 4.88 16 28 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.14 2.12 8.07 -2.39 -0.02 2.10 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.21 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.12 4.93 7.59 -2.91 -0.02 4.91 16 36 H 0.12 5.76 6.16 -2.91 -0.02 5.75 16 Total: -1.00 -63.90 323.63 6.19 -57.71 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 1.10 Total: 27.74 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 5.03 Total: -23.33 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.75 Total: -56.37 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.22 Total: -40.81 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Total: -63.90 6.19 -57.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089885033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.419 kcal (2) G-P(sol) polarization free energy of solvation -63.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds