Wall clock time and date at job start Tue Mar 31 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.47014 * 2 1 4 4 C 1.50697 * 109.46681 * 119.99971 * 2 1 3 5 5 H 1.08002 * 120.00331 * 119.99908 * 4 2 1 6 6 C 1.37878 * 120.00262 * 299.99727 * 4 2 1 7 7 N 1.31522 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47269 * 89.99934 * 8 6 4 10 10 H 1.48495 * 109.47200 * 209.99795 * 8 6 4 11 11 H 1.48501 * 109.47180 * 330.00049 * 8 6 4 12 12 N 1.46497 * 109.46862 * 239.99625 * 2 1 3 13 13 C 1.34777 * 119.99773 * 85.00654 * 12 2 1 14 14 O 1.21663 * 119.99991 * 359.97438 * 13 12 2 15 15 C 1.46727 * 119.99786 * 179.97438 * 13 12 2 16 16 C 1.34894 * 119.99863 * 180.02562 * 15 13 12 17 17 C 1.46807 * 119.99867 * 179.97438 * 16 15 13 18 18 N 1.31096 * 125.02947 * 359.97438 * 17 16 15 19 19 C 1.34790 * 108.92710 * 180.02562 * 18 17 16 20 20 C 1.39952 * 133.64959 * 180.02562 * 19 18 17 21 21 C 1.36559 * 119.83009 * 179.97438 * 20 19 18 22 22 C 1.38825 * 120.61496 * 359.97438 * 21 20 19 23 23 C 1.37922 * 120.53460 * 0.02562 * 22 21 20 24 24 C 1.38695 * 119.76653 * 359.97438 * 23 22 21 25 25 O 1.34821 * 125.02283 * 180.02562 * 17 16 15 26 26 H 1.09005 * 109.46801 * 300.00173 * 1 2 3 27 27 H 1.08998 * 109.46520 * 60.00003 * 1 2 3 28 28 H 1.08995 * 109.47265 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00384 * 264.99997 * 12 2 1 31 31 H 1.07999 * 119.99910 * 359.97438 * 15 13 12 32 32 H 1.07999 * 120.00228 * 359.97438 * 16 15 13 33 33 H 1.07993 * 120.08670 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.69505 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.72975 * 179.72125 * 22 21 20 36 36 H 1.07995 * 120.11649 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5441 4.4120 10 1 1.3443 -0.9488 5.1123 11 1 2.4878 -2.5654 3.7123 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8575 1.1620 -2.4118 15 6 2.6367 -0.7100 -3.5549 16 6 2.7661 -0.0369 -4.7168 17 6 3.2565 -0.7288 -5.9152 18 7 3.5964 -1.9938 -5.9676 19 6 3.9986 -2.2869 -7.2202 20 6 4.4604 -3.4547 -7.8381 21 6 4.7998 -3.4347 -9.1607 22 6 4.6908 -2.2653 -9.9010 23 6 4.2380 -1.1031 -9.3125 24 6 3.8881 -1.1018 -7.9704 25 8 3.4248 -0.1568 -7.1244 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7081 1.1609 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 2.8942 -1.7577 -3.5062 32 1 2.5090 1.0109 -4.7654 33 1 4.5482 -4.3692 -7.2705 34 1 5.1563 -4.3369 -9.6353 35 1 4.9674 -2.2646 -10.9450 36 1 4.1555 -0.1973 -9.8948 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095957167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:10 Heat of formation + Delta-G solvation = -3.967552 kcal Electronic energy + Delta-G solvation = -20555.440116 eV Core-core repulsion = 17198.620634 eV Total energy + Delta-G solvation = -3356.819482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.36278 -40.68817 -39.05194 -36.91126 -36.26744 -34.53172 -34.30218 -31.75514 -31.20596 -30.07448 -27.35227 -26.45417 -24.24698 -23.50332 -23.04467 -21.81560 -20.84393 -19.44106 -18.71667 -18.41126 -17.93534 -17.63628 -17.20402 -16.56409 -16.14048 -15.81804 -15.37422 -15.06988 -14.88990 -14.80851 -14.41807 -13.74065 -13.60708 -13.46924 -13.10413 -13.01361 -12.95599 -12.86638 -12.75339 -12.58022 -12.26449 -12.13084 -11.60253 -11.21738 -11.11668 -11.00120 -10.59865 -9.88899 -9.81470 -9.29796 -8.17624 -6.34947 -0.95615 0.18685 0.27231 1.21993 1.46334 1.46586 1.49745 1.57534 2.29760 2.33587 2.48756 2.63352 2.72988 3.13158 3.41072 3.75335 3.95116 3.99558 4.09541 4.22432 4.25491 4.39032 4.71487 4.76431 4.80990 4.93111 5.00218 5.03681 5.08679 5.13938 5.29986 5.36908 5.41734 5.57479 5.67834 5.68703 5.88341 6.08608 6.40112 6.71546 6.85749 7.29092 7.44604 8.88792 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.037394 B = 0.002616 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.601862 B =10700.536350 C =11238.250893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.268 3.732 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.691 5.691 13 C 0.529 3.471 14 O -0.591 6.591 15 C -0.108 4.108 16 C -0.022 4.022 17 C 0.262 3.738 18 N -0.477 5.477 19 C -0.010 4.010 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.104 4.104 24 C -0.017 4.017 25 O -0.214 6.214 26 H 0.068 0.932 27 H 0.015 0.985 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.409 0.591 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -10.139 -25.058 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.184 1.184 12 N -0.339 5.339 13 C 0.317 3.683 14 O -0.474 6.474 15 C -0.133 4.133 16 C -0.043 4.043 17 C 0.056 3.944 18 N -0.207 5.207 19 C -0.124 4.124 20 C -0.092 4.092 21 C -0.127 4.127 22 C -0.092 4.092 23 C -0.123 4.123 24 C -0.067 4.067 25 O -0.105 6.105 26 H 0.087 0.913 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.181 0.819 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.193 0.807 35 H 0.201 0.799 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.707 -9.617 -24.436 27.368 hybrid contribution 0.051 0.308 0.762 0.823 sum 7.758 -9.309 -23.675 26.596 Atomic orbital electron populations 1.21914 0.97987 0.99682 0.99832 1.18446 0.91370 0.92148 0.81573 0.97799 1.21540 1.32675 1.13664 0.90703 0.90724 1.25802 0.94855 0.95615 1.02328 1.70051 1.36863 1.23919 1.24663 0.85326 0.77742 0.79178 0.77976 1.20395 1.20941 1.18400 1.46221 1.63733 1.14435 1.09482 1.18675 0.78613 0.86515 0.84523 1.90766 1.53147 1.17588 1.85944 1.23134 0.97543 1.01783 0.90797 1.20849 0.97334 1.00145 0.85987 1.23987 0.97819 0.87210 0.85368 1.70482 1.16663 1.12427 1.21155 1.20290 1.05803 0.97009 0.89250 1.20537 0.97498 0.95273 0.95845 1.21336 0.98587 1.00449 0.92329 1.21664 0.95325 0.90152 1.02034 1.20418 1.01778 1.02086 0.88001 1.21120 1.03308 0.87376 0.94852 1.84565 1.67960 1.38486 1.19522 0.91299 0.96613 0.93940 0.92500 0.75514 0.81949 0.82235 0.83456 0.80656 0.79947 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.86 9.26 71.99 0.67 -6.19 16 2 C 0.27 13.89 2.56 44.25 0.11 14.00 16 3 H 0.00 0.25 7.58 -2.39 -0.02 0.23 16 4 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.22 16 8 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 12 N -0.69 -28.79 5.06 -450.05 -2.28 -31.07 16 13 C 0.53 21.27 7.72 86.46 0.67 21.94 16 14 O -0.59 -28.65 15.90 -4.23 -0.07 -28.72 16 15 C -0.11 -3.30 9.64 23.72 0.23 -3.07 16 16 C -0.02 -0.65 9.75 23.74 0.23 -0.42 16 17 C 0.26 7.60 7.97 87.05 0.69 8.30 16 18 N -0.48 -13.92 10.74 -298.27 -3.20 -17.12 16 19 C -0.01 -0.24 7.22 39.70 0.29 0.05 16 20 C -0.07 -1.24 10.06 22.29 0.22 -1.01 16 21 C -0.11 -1.05 9.97 22.02 0.22 -0.83 16 22 C -0.07 -0.65 10.03 22.34 0.22 -0.43 16 23 C -0.10 -1.56 10.07 22.30 0.22 -1.34 16 24 C -0.02 -0.39 7.43 22.98 0.17 -0.22 16 25 O -0.21 -5.99 10.81 -14.99 -0.16 -6.15 16 26 H 0.07 3.81 6.07 -2.38 -0.01 3.80 16 27 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.41 14.24 8.52 -92.71 -0.79 13.45 16 31 H 0.16 4.21 7.68 -2.91 -0.02 4.19 16 32 H 0.16 4.60 7.52 -2.91 -0.02 4.58 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 35 H 0.18 0.09 8.06 -2.91 -0.02 0.06 16 36 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -71.70 322.31 1.51 -70.19 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.33 Total: 17.81 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.62 Total: 3.30 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -5.24 Total: -100.41 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.23 Total: -34.87 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -71.70 1.51 -70.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095957167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.221 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds