Wall clock time and date at job start Tue Mar 31 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46893 * 111.00317 * 294.30095 * 4 3 2 6 6 C 1.53236 * 109.34286 * 172.74816 * 5 4 3 7 7 N 1.47078 * 108.52229 * 53.82757 * 6 5 4 8 8 S 1.65605 * 120.87966 * 128.83677 * 7 6 5 9 9 O 1.42090 * 104.27758 * 26.05114 * 8 7 6 10 10 O 1.42109 * 104.27593 * 153.90934 * 8 7 6 11 11 C 1.81400 * 104.44898 * 269.97738 * 8 7 6 12 12 C 1.52997 * 109.46800 * 179.97438 * 11 8 7 13 13 C 1.50703 * 109.47134 * 180.02562 * 12 11 8 14 14 H 1.08007 * 119.99796 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00407 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00325 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47021 * 120.00451 * 17 15 13 20 20 H 1.48504 * 109.47137 * 240.00525 * 17 15 13 21 21 C 1.47077 * 118.23921 * 308.82112 * 7 6 5 22 22 C 1.46899 * 111.00026 * 169.99826 * 4 3 2 23 23 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 1.08999 * 109.49199 * 292.70961 * 5 4 3 27 27 H 1.09000 * 109.49377 * 52.78798 * 5 4 3 28 28 H 1.09003 * 109.63099 * 294.12254 * 6 5 4 29 29 H 1.09000 * 109.62835 * 173.54152 * 6 5 4 30 30 H 1.08993 * 109.47487 * 300.00146 * 11 8 7 31 31 H 1.09001 * 109.47006 * 60.00401 * 11 8 7 32 32 H 1.09000 * 109.47523 * 300.00105 * 12 11 8 33 33 H 1.08998 * 109.47468 * 60.00275 * 12 11 8 34 34 H 0.97005 * 120.00318 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.62520 * 291.46864 * 21 7 6 36 36 H 1.08994 * 109.62877 * 170.89445 * 21 7 6 37 37 H 1.09009 * 109.49214 * 307.21469 * 22 4 3 38 38 H 1.08998 * 109.49239 * 67.28950 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7801 -2.2583 0.8612 6 6 3.1464 -3.6983 0.4869 7 7 4.5623 -3.7322 0.0902 8 16 5.6072 -4.8275 0.7618 9 8 4.7752 -5.9104 1.1542 10 8 6.6165 -4.9988 -0.2239 11 6 6.2776 -3.9792 2.2184 12 6 7.2681 -4.9001 2.9338 13 6 7.8245 -4.1957 4.1443 14 1 7.5034 -3.1918 4.3800 15 6 8.7427 -4.8332 4.9515 16 7 9.1333 -6.0557 4.6647 17 14 9.4319 -3.9603 6.4523 18 1 8.8357 -2.6040 6.5534 19 1 9.1007 -4.7384 7.6730 20 1 10.9069 -3.8448 6.3239 21 6 5.0255 -2.7677 -0.9190 22 6 4.5850 -1.3643 -0.4893 23 1 -1.0498 -0.0004 0.0001 24 1 3.0090 0.6649 -0.7843 25 1 3.0092 0.3479 0.9672 26 1 3.3275 -1.9648 1.7569 27 1 1.7088 -2.1933 1.0517 28 1 2.5251 -4.0298 -0.3451 29 1 2.9912 -4.3508 1.3462 30 1 6.7883 -3.0686 1.9056 31 1 5.4636 -3.7245 2.8971 32 1 6.7569 -5.8106 3.2467 33 1 8.0821 -5.1553 2.2554 34 1 9.7796 -6.5042 5.2324 35 1 4.5847 -3.0097 -1.8861 36 1 6.1125 -2.8049 -0.9892 37 1 4.8229 -0.6509 -1.2784 38 1 5.1074 -1.0832 0.4251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128661206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:24 Heat of formation + Delta-G solvation = -9.288859 kcal Electronic energy + Delta-G solvation = -20879.743811 eV Core-core repulsion = 17658.137531 eV Total energy + Delta-G solvation = -3221.606280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.20435 -36.67766 -35.56182 -35.28459 -33.91210 -32.73719 -31.25799 -31.17949 -28.24281 -25.63526 -24.51665 -23.94989 -21.78116 -20.48401 -18.61376 -18.38670 -17.62460 -16.57662 -16.01772 -15.55390 -15.50488 -15.38165 -15.11909 -14.57181 -14.55765 -14.26818 -13.51628 -13.38442 -13.03667 -12.57073 -12.40129 -12.23294 -11.78001 -11.72029 -11.59732 -11.44423 -11.23664 -11.11567 -10.99506 -10.96888 -10.60560 -10.41610 -10.40377 -10.40265 -9.79835 -9.38629 -8.93186 -8.52970 -8.52439 -6.14677 -4.20379 0.72983 2.44409 2.61924 2.99204 3.23270 3.30580 3.33716 3.76361 4.15055 4.27984 4.36855 4.52214 4.55523 4.88385 4.94342 4.99601 5.19136 5.20534 5.22935 5.29473 5.33428 5.47355 5.55059 5.61033 5.68786 5.71142 5.82029 5.96158 6.04168 6.46062 6.61233 6.70764 6.74831 7.27768 7.33746 7.38857 7.78214 8.15191 8.83135 9.44544 10.96354 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.004305 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.156367 B = 6502.768171 C = 7300.159180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.161 3.839 4 N -0.534 5.534 5 C 0.038 3.962 6 C 0.129 3.871 7 N -1.009 6.009 8 S 2.591 3.409 9 O -0.963 6.963 10 O -0.963 6.963 11 C -0.589 4.589 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.129 3.871 22 C 0.039 3.961 23 H 0.217 0.783 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.681 12.157 -9.846 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C 0.034 3.966 4 N -0.258 5.258 5 C -0.091 4.091 6 C 0.003 3.997 7 N -0.846 5.846 8 S 2.689 3.311 9 O -0.953 6.953 10 O -0.953 6.953 11 C -0.722 4.722 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.003 3.997 22 C -0.090 4.090 23 H 0.233 0.767 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.612 10.940 -10.600 20.429 hybrid contribution 0.570 1.359 1.982 2.470 sum -13.042 12.299 -8.618 19.890 Atomic orbital electron populations 1.24883 0.95889 0.99547 1.01420 1.22824 0.94169 1.00814 1.00062 1.19019 0.85208 0.90928 1.01422 1.61843 1.14177 1.07418 1.42411 1.22578 1.01485 0.93229 0.91840 1.21419 0.81293 0.95597 1.01345 1.58086 1.19877 1.52743 1.53864 1.05740 0.73687 0.74796 0.76845 1.93534 1.66720 1.50518 1.84564 1.93536 1.59383 1.84925 1.57487 1.30502 1.11374 1.13151 1.17208 1.18967 0.92390 0.93586 0.96186 1.21029 1.24817 1.01052 1.09016 0.92081 1.25070 0.96323 0.94964 0.98138 1.69963 1.32024 1.12098 1.38698 0.86420 0.78865 0.79622 0.82407 1.19698 1.20769 1.20760 1.21429 1.00050 0.86476 0.91776 1.22563 0.86838 0.98348 1.01258 0.76663 0.88351 0.92248 0.93718 0.89579 0.90591 0.88688 0.86438 0.86467 0.94857 0.94843 0.92556 0.90513 0.88562 0.89302 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.18 -1.71 12.32 -37.12 -0.46 -2.17 16 3 C 0.16 1.37 5.46 -6.61 -0.04 1.34 16 4 N -0.53 -5.33 4.61 -237.84 -1.10 -6.42 16 5 C 0.04 0.40 5.46 -3.71 -0.02 0.38 16 6 C 0.13 1.56 6.46 -3.60 -0.02 1.54 16 7 N -1.01 -13.84 3.26 -113.24 -0.37 -14.21 16 8 S 2.59 46.68 5.41 -107.50 -0.58 46.10 16 9 O -0.96 -19.96 16.79 -57.54 -0.97 -20.93 16 10 O -0.96 -19.81 16.79 -57.54 -0.97 -20.78 16 11 C -0.59 -11.18 6.12 37.16 0.23 -10.95 16 12 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 13 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.13 1.47 6.46 -3.61 -0.02 1.45 16 22 C 0.04 0.37 5.62 -3.70 -0.02 0.34 16 23 H 0.22 1.12 7.80 -54.10 -0.42 0.69 16 24 H 0.10 0.68 7.97 -51.93 -0.41 0.27 16 25 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.85 7.07 -51.93 -0.37 0.48 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.15 7.19 -51.93 -0.37 0.78 16 30 H 0.12 2.00 8.14 -51.93 -0.42 1.57 16 31 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.09 7.19 -51.93 -0.37 0.72 16 37 H 0.09 0.64 7.99 -51.92 -0.41 0.22 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -34.85 332.24 -9.30 -44.15 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.71 Total: -1.62 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -0.33 Total: -21.71 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.73 Total: -46.28 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.93 Total: -41.71 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.58 Total: 46.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.85 -9.30 -44.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128661206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.865 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds