Wall clock time and date at job start Tue Mar 31 2020 03:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 5 5 C 1.46893 * 111.00317 * 294.30095 * 4 3 2 6 6 C 1.53236 * 109.34286 * 172.74816 * 5 4 3 7 7 N 1.47078 * 108.52229 * 53.82757 * 6 5 4 8 8 S 1.65605 * 120.87966 * 128.83677 * 7 6 5 9 9 O 1.42090 * 104.27758 * 26.05114 * 8 7 6 10 10 O 1.42109 * 104.27593 * 153.90934 * 8 7 6 11 11 C 1.81400 * 104.44898 * 269.97738 * 8 7 6 12 12 C 1.52997 * 109.46800 * 179.97438 * 11 8 7 13 13 C 1.50703 * 109.47134 * 180.02562 * 12 11 8 14 14 H 1.08007 * 119.99796 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00407 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00325 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46885 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47021 * 120.00451 * 17 15 13 20 20 H 1.48504 * 109.47137 * 240.00525 * 17 15 13 21 21 C 1.47077 * 118.23921 * 308.82112 * 7 6 5 22 22 C 1.46899 * 111.00026 * 169.99826 * 4 3 2 23 23 H 4.40879 * 5.52178 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 1.08999 * 109.49199 * 292.70961 * 5 4 3 27 27 H 1.09000 * 109.49377 * 52.78798 * 5 4 3 28 28 H 1.09003 * 109.63099 * 294.12254 * 6 5 4 29 29 H 1.09000 * 109.62835 * 173.54152 * 6 5 4 30 30 H 1.08993 * 109.47487 * 300.00146 * 11 8 7 31 31 H 1.09001 * 109.47006 * 60.00401 * 11 8 7 32 32 H 1.09000 * 109.47523 * 300.00105 * 12 11 8 33 33 H 1.08998 * 109.47468 * 60.00275 * 12 11 8 34 34 H 0.97005 * 120.00318 * 179.97438 * 16 15 13 35 35 H 1.09005 * 109.62520 * 291.46864 * 21 7 6 36 36 H 1.08994 * 109.62877 * 170.89445 * 21 7 6 37 37 H 1.09009 * 109.49214 * 307.21469 * 22 4 3 38 38 H 1.08998 * 109.49239 * 67.28950 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3619 -0.2467 5 6 2.7801 -2.2583 0.8612 6 6 3.1464 -3.6983 0.4869 7 7 4.5623 -3.7322 0.0902 8 16 5.6072 -4.8275 0.7618 9 8 4.7752 -5.9104 1.1542 10 8 6.6165 -4.9988 -0.2239 11 6 6.2776 -3.9792 2.2184 12 6 7.2681 -4.9001 2.9338 13 6 7.8245 -4.1957 4.1443 14 1 7.5034 -3.1918 4.3800 15 6 8.7427 -4.8332 4.9515 16 7 9.1333 -6.0557 4.6647 17 14 9.4319 -3.9603 6.4523 18 1 8.8357 -2.6040 6.5534 19 1 9.1007 -4.7384 7.6730 20 1 10.9069 -3.8448 6.3239 21 6 5.0255 -2.7677 -0.9190 22 6 4.5850 -1.3643 -0.4893 23 1 -1.0498 -0.0004 0.0001 24 1 3.0090 0.6649 -0.7843 25 1 3.0092 0.3479 0.9672 26 1 3.3275 -1.9648 1.7569 27 1 1.7088 -2.1933 1.0517 28 1 2.5251 -4.0298 -0.3451 29 1 2.9912 -4.3508 1.3462 30 1 6.7883 -3.0686 1.9056 31 1 5.4636 -3.7245 2.8971 32 1 6.7569 -5.8106 3.2467 33 1 8.0821 -5.1553 2.2554 34 1 9.7796 -6.5042 5.2324 35 1 4.5847 -3.0097 -1.8861 36 1 6.1125 -2.8049 -0.9892 37 1 4.8229 -0.6509 -1.2784 38 1 5.1074 -1.0832 0.4251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128661206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:22 Heat of formation + Delta-G solvation = -35.375007 kcal Electronic energy + Delta-G solvation = -20880.874991 eV Core-core repulsion = 17658.137531 eV Total energy + Delta-G solvation = -3222.737460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.03344 -38.24853 -37.05502 -36.24126 -35.90456 -33.45659 -33.13888 -32.12098 -29.02988 -27.61113 -25.36819 -24.81161 -23.60975 -21.52347 -19.85257 -19.23622 -18.93652 -18.34816 -17.31692 -17.10439 -16.56875 -16.32273 -16.19324 -15.82814 -15.77576 -15.22649 -15.10923 -14.49368 -14.21057 -13.83144 -13.75235 -13.51515 -13.38988 -13.21463 -12.96566 -12.89651 -12.80113 -12.30090 -12.27497 -12.20918 -12.14660 -12.01501 -11.71758 -11.31956 -11.11889 -11.03988 -10.66858 -10.09695 -9.31245 -8.27213 -6.41453 -0.74127 1.40152 1.40739 1.53884 1.67248 1.82314 1.98487 2.36915 2.84042 3.06181 3.06491 3.13903 3.56228 3.59267 3.99644 4.01460 4.11007 4.18677 4.22980 4.33513 4.47494 4.58934 4.64558 4.70955 4.74365 4.78946 4.93081 5.04100 5.09685 5.17635 5.25216 5.25783 5.58453 5.66968 5.97693 6.02559 6.04792 6.72252 6.76827 7.28911 8.85242 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.004305 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.156367 B = 6502.768171 C = 7300.159180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.211 4.211 3 C 0.161 3.839 4 N -0.541 5.541 5 C 0.043 3.957 6 C 0.124 3.876 7 N -0.999 5.999 8 S 2.614 3.386 9 O -0.994 6.994 10 O -0.991 6.991 11 C -0.585 4.585 12 C 0.020 3.980 13 C -0.538 4.538 14 H 0.075 0.925 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.256 1.256 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.119 3.881 22 C 0.042 3.958 23 H 0.241 0.759 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.005 0.995 33 H 0.007 0.993 34 H 0.267 0.733 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 14.759 -9.783 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.212 4.212 3 C 0.035 3.965 4 N -0.266 5.266 5 C -0.087 4.087 6 C -0.002 4.002 7 N -0.838 5.838 8 S 2.712 3.288 9 O -0.984 6.984 10 O -0.981 6.981 11 C -0.717 4.717 12 C -0.018 4.018 13 C -0.576 4.576 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.798 3.202 18 H -0.180 1.180 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.006 4.006 22 C -0.087 4.087 23 H 0.257 0.743 24 H 0.133 0.867 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.640 13.557 -10.536 22.564 hybrid contribution 0.788 0.564 1.867 2.103 sum -13.852 14.121 -8.669 21.597 Atomic orbital electron populations 1.25643 0.96817 0.98424 1.00482 1.23276 0.95004 1.01876 1.01031 1.19094 0.84877 0.90207 1.02334 1.61825 1.14452 1.08256 1.42094 1.22503 1.01906 0.92158 0.92097 1.21615 0.79984 0.97010 1.01555 1.57719 1.19829 1.52577 1.53716 1.04760 0.73285 0.74708 0.76072 1.93486 1.67365 1.52557 1.85007 1.93492 1.60914 1.85613 1.58121 1.30380 1.10729 1.12686 1.17910 1.18823 0.92935 0.93971 0.96107 1.21524 1.24798 1.01727 1.09596 0.90700 1.26120 0.96773 0.95671 1.01684 1.70107 1.32948 1.13980 1.40325 0.85260 0.78068 0.78943 0.77939 1.17951 1.20388 1.20297 1.21718 1.00267 0.87149 0.91439 1.22586 0.86568 0.97243 1.02294 0.74250 0.86679 0.91763 0.93713 0.88875 0.89914 0.89084 0.84164 0.84469 0.97642 0.97495 0.92368 0.89660 0.88615 0.86570 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 19.25 74.32 1.43 -1.43 16 2 C -0.21 -3.59 12.32 31.13 0.38 -3.20 16 3 C 0.16 2.33 5.46 84.50 0.46 2.79 16 4 N -0.54 -9.38 4.61 -906.38 -4.18 -13.56 16 5 C 0.04 0.81 5.46 86.38 0.47 1.28 16 6 C 0.12 2.81 6.46 86.35 0.56 3.37 16 7 N -1.00 -26.21 3.26 -512.19 -1.67 -27.88 16 8 S 2.61 94.60 5.41 -56.49 -0.31 94.29 16 9 O -0.99 -41.97 16.79 -127.65 -2.14 -44.11 16 10 O -0.99 -41.29 16.79 -127.65 -2.14 -43.43 16 11 C -0.59 -22.02 6.12 71.98 0.44 -21.58 16 12 C 0.02 1.07 4.98 29.85 0.15 1.22 16 13 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16 14 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.93 -56.77 13.29 21.44 0.28 -56.48 16 17 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 18 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.12 2.50 6.46 86.35 0.56 3.05 16 22 C 0.04 0.67 5.62 86.38 0.49 1.15 16 23 H 0.24 1.82 7.80 -4.43 -0.03 1.79 16 24 H 0.12 1.24 7.97 -2.39 -0.02 1.22 16 25 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.64 7.07 -2.39 -0.02 1.63 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.09 2.14 7.19 -2.39 -0.02 2.12 16 30 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 31 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.10 2.03 7.19 -2.39 -0.02 2.01 16 37 H 0.12 1.24 7.99 -2.38 -0.02 1.22 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -75.87 332.24 -1.46 -77.34 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.03 Total: 11.32 kcal Atomic # 6 Polarization: -48.18 SS G_CDS: 5.63 Total: -42.55 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -5.56 Total: -97.93 kcal Atomic # 8 Polarization: -83.25 SS G_CDS: -4.29 Total: -87.54 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 94.60 SS G_CDS: -0.31 Total: 94.29 kcal Total: -75.87 -1.46 -77.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128661206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.963 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds