Wall clock time and date at job start Tue Mar 31 2020 03:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37094 * 120.00108 * 2 1 4 4 H 1.08003 * 119.99839 * 142.82230 * 3 2 1 5 5 C 1.38950 * 119.99951 * 322.82539 * 3 2 1 6 6 N 1.31420 * 119.99925 * 158.40883 * 5 3 2 7 7 Si 1.86795 * 119.99960 * 338.40581 * 5 3 2 8 8 H 1.48502 * 109.46858 * 95.72343 * 7 5 3 9 9 H 1.48503 * 109.47422 * 215.72053 * 7 5 3 10 10 H 1.48493 * 109.47285 * 335.72254 * 7 5 3 11 11 C 1.34774 * 119.99655 * 179.97438 * 2 1 3 12 12 O 1.21299 * 119.99582 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00386 * 0.02562 * 11 2 1 14 14 N 1.46498 * 109.47520 * 180.02562 * 13 11 2 15 15 C 1.34524 * 126.74612 * 124.99831 * 14 13 11 16 16 N 1.30677 * 108.29651 * 180.02562 * 15 14 13 17 17 C 1.33974 * 109.78025 * 0.02562 * 16 15 14 18 18 C 1.48403 * 125.65377 * 179.73799 * 17 16 15 19 19 C 1.39322 * 120.12465 * 179.75263 * 18 17 16 20 20 C 1.38024 * 119.88034 * 179.70029 * 19 18 17 21 21 C 1.38321 * 120.11827 * 0.57181 * 20 19 18 22 22 C 1.38318 * 120.24241 * 359.72113 * 21 20 19 23 23 C 1.38027 * 120.12029 * 359.97438 * 22 21 20 24 24 N 1.31498 * 108.70087 * 359.97438 * 17 16 15 25 25 H 1.08999 * 109.47463 * 265.13850 * 1 2 3 26 26 H 1.09005 * 109.46978 * 25.13572 * 1 2 3 27 27 H 1.09004 * 109.47317 * 145.13656 * 1 2 3 28 28 H 0.97001 * 119.99734 * 179.97438 * 6 5 3 29 29 H 1.08993 * 109.47065 * 59.99936 * 13 11 2 30 30 H 1.09000 * 109.47225 * 300.00139 * 13 11 2 31 31 H 1.08002 * 125.84860 * 359.97438 * 15 14 13 32 32 H 1.08007 * 120.06008 * 359.97438 * 19 18 17 33 33 H 1.08005 * 119.93984 * 180.31894 * 20 19 18 34 34 H 1.08003 * 119.87732 * 179.74861 * 21 20 19 35 35 H 1.07997 * 119.94013 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.06019 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2823 0.5652 5 6 1.6675 2.2683 -0.7271 6 7 2.0433 3.4890 -0.4175 7 14 0.4841 1.9866 -2.1447 8 1 -0.9112 2.1586 -1.6662 9 1 0.7618 2.9682 -3.2239 10 1 0.6608 0.6093 -2.6708 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 7 2.3372 -3.5859 0.0018 15 6 2.3895 -4.5990 0.8853 16 7 3.3759 -5.3869 0.5479 17 6 3.9815 -4.9114 -0.5485 18 6 5.1472 -5.5281 -1.2291 19 6 5.6845 -4.9358 -2.3700 20 6 6.7726 -5.5103 -2.9954 21 6 7.3221 -6.6783 -2.4984 22 6 6.7888 -7.2738 -1.3696 23 6 5.7047 -6.7045 -0.7326 24 7 3.3751 -3.8049 -0.9187 25 1 -0.3634 -0.0871 1.0239 26 1 -0.3633 0.9304 -0.4365 27 1 -0.3634 -0.8432 -0.5874 28 1 1.7064 4.2437 -0.9254 29 1 0.7590 -2.5302 -0.8896 30 1 0.7583 -2.5299 0.8903 31 1 1.7299 -4.7369 1.7292 32 1 5.2532 -4.0264 -2.7617 33 1 7.1931 -5.0492 -3.8769 34 1 8.1709 -7.1267 -2.9932 35 1 7.2220 -8.1855 -0.9854 36 1 5.2894 -7.1701 0.1489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129695665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:51 Heat of formation + Delta-G solvation = 82.034364 kcal Electronic energy + Delta-G solvation = -21435.895064 eV Core-core repulsion = 18115.097656 eV Total energy + Delta-G solvation = -3320.797408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.03927 -40.55545 -39.83004 -36.85823 -35.17664 -34.16767 -32.93366 -31.94502 -31.38199 -29.32307 -28.05606 -26.46127 -24.48097 -23.88047 -22.52940 -21.56792 -20.85150 -19.13811 -18.57166 -18.01840 -17.61559 -17.25200 -16.65001 -16.32254 -16.12350 -16.05212 -15.35709 -15.05248 -14.69382 -14.50556 -14.35582 -14.30243 -14.15291 -13.84931 -13.50511 -13.45660 -12.85354 -12.65165 -12.29900 -12.25812 -12.02307 -11.87752 -11.36596 -11.10172 -11.03555 -10.89006 -10.41877 -9.88932 -9.77640 -9.43973 -8.56923 -6.21134 -0.06616 0.46731 0.85355 1.16346 1.30542 1.31090 1.43161 1.80892 2.00052 2.13386 2.58218 2.86699 2.97022 3.07792 3.49201 3.72172 3.92732 4.00947 4.07080 4.11479 4.26734 4.29320 4.34315 4.54755 4.62131 4.71095 4.82792 4.85325 5.13249 5.14584 5.29897 5.44745 5.55586 5.55713 5.60293 5.88385 5.96360 6.03906 6.48189 6.86720 7.04353 7.19484 7.75527 8.60633 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.003846 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.352735 B = 7279.344827 C = 7916.840444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.477 5.477 3 C -0.338 4.338 4 H 0.037 0.963 5 C 0.010 3.990 6 N -0.911 5.911 7 Si 0.958 3.042 8 H -0.230 1.230 9 H -0.294 1.294 10 H -0.260 1.260 11 C 0.438 3.562 12 O -0.603 6.603 13 C 0.121 3.879 14 N -0.369 5.369 15 C 0.266 3.734 16 N -0.559 5.559 17 C 0.232 3.768 18 C -0.037 4.037 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.103 4.103 22 C -0.120 4.120 23 C -0.088 4.088 24 N -0.322 5.322 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.281 0.719 29 H 0.137 0.863 30 H 0.182 0.818 31 H 0.278 0.722 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -21.144 -1.797 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.200 5.200 3 C -0.467 4.467 4 H 0.055 0.945 5 C -0.192 4.192 6 N -0.548 5.548 7 Si 0.781 3.219 8 H -0.154 1.154 9 H -0.222 1.222 10 H -0.184 1.184 11 C 0.227 3.773 12 O -0.486 6.486 13 C -0.003 4.003 14 N -0.160 5.160 15 C -0.029 4.029 16 N -0.286 5.286 17 C -0.047 4.047 18 C -0.039 4.039 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.108 4.108 24 N -0.150 5.150 25 H 0.108 0.892 26 H 0.073 0.927 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.154 0.846 30 H 0.199 0.801 31 H 0.293 0.707 32 H 0.124 0.876 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.893 -20.680 -2.221 20.999 hybrid contribution -0.280 1.296 -0.245 1.349 sum -3.173 -19.383 -2.466 19.795 Atomic orbital electron populations 1.22416 0.79168 1.03336 1.04367 1.43774 1.06448 1.03968 1.65853 1.18598 1.09503 0.87943 1.30611 0.94475 1.26239 1.00009 0.93741 0.99231 1.69875 1.45946 0.99375 1.39648 0.85715 0.79512 0.78731 0.77922 1.15385 1.22173 1.18377 1.21249 0.88332 0.86395 0.81365 1.90641 1.16563 1.87429 1.53979 1.21976 0.88573 0.80276 1.09520 1.50077 1.24221 1.20654 1.21050 1.27094 0.96401 0.83622 0.95805 1.70404 1.10786 1.32311 1.15111 1.22750 0.97432 0.91033 0.93484 1.17762 0.93189 0.96861 0.96116 1.21267 0.97246 0.99505 0.94927 1.21371 0.95355 0.96858 1.00856 1.21697 0.99921 0.94602 0.95883 1.21495 0.95406 1.01099 0.95798 1.21344 0.96109 0.93418 0.99918 1.78327 1.02894 1.17604 1.16213 0.89171 0.92650 0.87780 0.90904 0.84575 0.80132 0.70698 0.87624 0.83604 0.82167 0.82157 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.50 8.78 127.77 1.12 2.63 16 2 N -0.48 -21.80 2.59 -658.89 -1.70 -23.51 16 3 C -0.34 -19.82 9.37 84.04 0.79 -19.03 16 4 H 0.04 2.61 7.90 -2.91 -0.02 2.58 16 5 C 0.01 0.56 5.29 84.93 0.45 1.01 16 6 N -0.91 -54.21 13.96 21.66 0.30 -53.90 16 7 Si 0.96 40.77 24.96 68.60 1.71 42.48 16 8 H -0.23 -8.12 6.69 99.48 0.67 -7.46 16 9 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 11 C 0.44 19.59 7.66 87.66 0.67 20.26 16 12 O -0.60 -34.94 15.60 -3.09 -0.05 -34.99 16 13 C 0.12 3.36 5.64 85.63 0.48 3.85 16 14 N -0.37 -12.17 3.41 -355.86 -1.21 -13.38 16 15 C 0.27 6.94 12.61 180.38 2.27 9.21 16 16 N -0.56 -18.22 10.82 -193.09 -2.09 -20.31 16 17 C 0.23 8.74 7.78 137.47 1.07 9.81 16 18 C -0.04 -1.22 5.88 -20.04 -0.12 -1.33 16 19 C -0.11 -3.45 9.68 22.48 0.22 -3.23 16 20 C -0.13 -2.95 10.03 22.24 0.22 -2.73 16 21 C -0.10 -1.87 10.04 22.31 0.22 -1.65 16 22 C -0.12 -2.31 10.03 22.24 0.22 -2.09 16 23 C -0.09 -2.29 9.69 22.48 0.22 -2.07 16 24 N -0.32 -13.41 11.44 -52.36 -0.60 -14.01 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 1.90 3.42 -2.38 -0.01 1.89 16 27 H 0.10 2.18 6.64 -2.39 -0.02 2.17 16 28 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.14 3.03 7.41 -2.39 -0.02 3.01 16 30 H 0.18 2.72 8.05 -2.39 -0.02 2.70 16 31 H 0.28 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.11 3.77 7.83 -2.91 -0.02 3.75 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.14 3.36 7.84 -2.91 -0.02 3.34 16 Total: -1.00 -92.33 313.96 5.27 -87.06 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.07 Total: 15.91 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 7.85 Total: 14.64 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.30 Total: -125.10 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.05 Total: -34.99 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.71 Total: 42.48 kcal Total: -92.33 5.27 -87.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129695665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.095 kcal (2) G-P(sol) polarization free energy of solvation -92.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds