Wall clock time and date at job start Tue Mar 31 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99890 * 2 1 4 4 H 1.48501 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46809 * 299.99695 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99490 * 3 2 1 7 7 C 1.38949 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99448 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99518 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00709 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99614 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46528 * 110.99870 * 66.04504 * 13 12 10 15 15 C 1.53214 * 110.03908 * 162.56003 * 14 13 12 16 16 S 1.81929 * 108.61454 * 61.65622 * 15 14 13 17 17 C 1.81879 * 101.79578 * 308.78673 * 16 15 14 18 18 H 1.08997 * 109.74498 * 290.99236 * 17 16 15 19 19 C 1.52998 * 109.48070 * 170.48428 * 17 16 15 20 20 O 1.42954 * 109.28385 * 183.78590 * 19 17 16 21 21 C 1.42870 * 114.23683 * 61.06120 * 20 19 17 22 22 C 1.53137 * 109.54918 * 299.19083 * 21 20 19 23 23 C 1.46436 * 111.00095 * 300.35928 * 13 12 10 24 24 H 1.08992 * 109.44206 * 78.04943 * 23 13 12 25 25 H 0.97002 * 120.00022 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00213 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.47103 * 60.00237 * 12 10 9 28 28 H 1.09000 * 109.47247 * 300.00115 * 12 10 9 29 29 H 1.08996 * 109.37973 * 282.74123 * 14 13 12 30 30 H 1.09003 * 109.37636 * 42.50414 * 14 13 12 31 31 H 1.09005 * 109.60963 * 181.39172 * 15 14 13 32 32 H 1.08994 * 109.61356 * 301.73481 * 15 14 13 33 33 H 1.08995 * 109.50430 * 303.73304 * 19 17 16 34 34 H 1.09004 * 109.49901 * 63.80679 * 19 17 16 35 35 H 1.09008 * 109.45405 * 59.21033 * 21 20 19 36 36 H 1.08998 * 109.46133 * 179.18071 * 21 20 19 37 37 H 1.09007 * 109.53910 * 177.32583 * 22 21 20 38 38 H 1.08996 * 109.54000 * 297.49496 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2438 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 2.9618 -6.0171 1.2528 15 6 3.6169 -7.3912 1.4268 16 16 4.7701 -7.6637 0.0464 17 6 3.7193 -7.3007 -1.3931 18 1 2.9601 -8.0755 -1.4995 19 6 4.5831 -7.2469 -2.6548 20 8 3.7686 -6.8748 -3.7691 21 6 3.1578 -5.5891 -3.6457 22 6 2.2429 -5.5722 -2.4178 23 6 3.0647 -5.9299 -1.1770 24 1 3.8389 -5.1776 -1.0272 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3907 0.0016 27 1 0.6168 -4.9208 -0.8876 28 1 0.6175 -4.9204 0.8924 29 1 3.7344 -5.2486 1.2281 30 1 2.2916 -5.8291 2.0916 31 1 4.1623 -7.4196 2.3702 32 1 2.8496 -8.1653 1.4244 33 1 5.3760 -6.5110 -2.5218 34 1 5.0233 -8.2274 -2.8364 35 1 3.9311 -4.8292 -3.5329 36 1 2.5698 -5.3792 -4.5392 37 1 1.8139 -4.5774 -2.2965 38 1 1.4429 -6.3007 -2.5491 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135562243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:11 Heat of formation + Delta-G solvation = -91.363150 kcal Electronic energy + Delta-G solvation = -21846.041347 eV Core-core repulsion = 18620.876059 eV Total energy + Delta-G solvation = -3225.165288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.45439 -39.86715 -37.93585 -35.87561 -33.67873 -33.39714 -32.61872 -31.52922 -28.27309 -26.37931 -25.46325 -24.55994 -22.63887 -21.60147 -20.88176 -19.83148 -18.32313 -17.68655 -17.39069 -17.06178 -16.61639 -16.38777 -16.16363 -16.09349 -15.81980 -15.55711 -14.85509 -14.52270 -14.33318 -14.05037 -13.67737 -13.34759 -13.28359 -13.21873 -13.00305 -12.63073 -12.50976 -12.44713 -12.26209 -12.15276 -11.89597 -11.52468 -11.30403 -11.00296 -10.78676 -10.63761 -10.02704 -9.22190 -8.70139 -8.49215 -5.98514 0.68167 1.32135 1.39077 1.46758 1.51788 1.98505 2.26032 2.65755 2.86680 3.17101 3.18479 3.54422 3.71343 3.76345 3.93377 4.06109 4.13831 4.20509 4.21703 4.35936 4.45428 4.49631 4.54411 4.62919 4.64696 4.66663 4.71761 4.84118 4.93559 5.03959 5.22924 5.38635 5.73771 5.94674 5.97454 6.03231 6.55527 7.09352 7.52058 8.06723 8.66496 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.005029 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.580693 B = 5566.316410 C = 6095.870609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.987 3.013 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.076 0.924 9 N -0.568 5.568 10 C 0.411 3.589 11 O -0.621 6.621 12 C 0.049 3.951 13 N -0.509 5.509 14 C 0.045 3.955 15 C -0.057 4.057 16 S -0.291 6.291 17 C -0.062 4.062 18 H 0.107 0.893 19 C 0.084 3.916 20 O -0.379 6.379 21 C 0.063 3.937 22 C -0.144 4.144 23 C 0.082 3.918 24 H 0.055 0.945 25 H 0.278 0.722 26 H 0.396 0.604 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.122 0.878 35 H 0.039 0.961 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -13.725 -2.032 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.812 3.188 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.094 0.906 9 N -0.204 5.204 10 C 0.198 3.802 11 O -0.508 6.508 12 C -0.082 4.082 13 N -0.231 5.231 14 C -0.085 4.085 15 C -0.205 4.205 16 S -0.063 6.063 17 C -0.191 4.191 18 H 0.125 0.875 19 C 0.005 3.995 20 O -0.297 6.297 21 C -0.014 4.014 22 C -0.183 4.183 23 C -0.028 4.028 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.230 0.770 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.036 -14.467 -2.147 14.937 hybrid contribution -0.878 2.491 0.506 2.689 sum 2.158 -11.976 -1.642 12.279 Atomic orbital electron populations 1.69667 1.06728 1.29234 1.50145 1.25964 0.96447 1.02239 0.96291 0.84951 0.77983 0.77551 0.78360 1.20074 1.19593 1.19681 1.19629 0.92521 0.84119 1.49736 0.90577 1.42077 1.09337 1.04880 1.64142 1.21957 0.88704 0.86918 0.82669 1.90470 1.15536 1.87648 1.57191 1.22215 0.95107 0.85074 1.05827 1.61863 1.18680 1.40367 1.02189 1.22317 0.97837 0.96033 0.92268 1.23497 0.99695 0.99515 0.97784 1.86697 1.24751 1.90916 1.03970 1.23923 0.99799 1.00021 0.95379 0.87465 1.22411 0.91310 1.02367 0.83377 1.87920 1.65459 1.35689 1.40663 1.22660 0.95455 0.84416 0.98840 1.22318 0.99513 1.02409 0.94077 1.21860 0.95598 0.94865 0.90503 0.92723 0.91279 0.77026 0.86787 0.86966 0.94224 0.89107 0.85992 0.87648 0.93203 0.86044 0.94214 0.86152 0.91770 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.10 13.05 21.66 0.28 -47.81 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 0.99 42.12 29.55 68.60 2.03 44.15 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.33 -18.07 9.68 84.04 0.81 -17.25 16 8 H 0.08 4.50 7.16 -2.91 -0.02 4.48 16 9 N -0.57 -27.54 5.29 -306.99 -1.62 -29.16 16 10 C 0.41 17.96 6.30 87.66 0.55 18.51 16 11 O -0.62 -31.41 11.56 -3.06 -0.04 -31.44 16 12 C 0.05 1.57 5.25 85.56 0.45 2.02 16 13 N -0.51 -15.48 4.52 -876.23 -3.96 -19.45 16 14 C 0.04 1.36 4.83 86.45 0.42 1.77 16 15 C -0.06 -1.37 6.68 72.05 0.48 -0.89 16 16 S -0.29 -8.03 21.76 -56.49 -1.23 -9.26 16 17 C -0.06 -1.68 2.83 30.74 0.09 -1.60 16 18 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 19 C 0.08 2.15 6.14 71.98 0.44 2.59 16 20 O -0.38 -10.20 10.76 -148.98 -1.60 -11.80 16 21 C 0.06 1.70 6.84 72.03 0.49 2.19 16 22 C -0.14 -4.15 4.39 30.66 0.13 -4.02 16 23 C 0.08 2.60 1.10 45.17 0.05 2.65 16 24 H 0.05 2.26 5.77 -2.39 -0.01 2.25 16 25 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 26 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 27 H 0.11 3.26 6.36 -2.38 -0.02 3.25 16 28 H 0.11 3.14 7.93 -2.39 -0.02 3.12 16 29 H 0.04 1.54 6.16 -2.39 -0.01 1.53 16 30 H 0.09 2.49 7.83 -2.39 -0.02 2.47 16 31 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.06 2.11 5.88 -2.38 -0.01 2.09 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -62.25 305.79 -1.41 -63.66 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.35 Total: 35.14 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.39 Total: 5.97 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -5.30 Total: -96.42 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -1.64 Total: -43.24 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.23 Total: -9.26 kcal Total: -62.25 -1.41 -63.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135562243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.701 kcal (2) G-P(sol) polarization free energy of solvation -62.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds