Wall clock time and date at job start Tue Mar 31 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47191 * 270.00563 * 3 2 1 5 5 H 1.48501 * 109.46719 * 30.00746 * 3 2 1 6 6 H 1.48501 * 109.46808 * 150.00340 * 3 2 1 7 7 C 1.38948 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00235 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99757 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99981 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99788 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46975 * 173.77558 * 12 10 9 14 14 C 1.46440 * 111.00135 * 167.28100 * 13 12 10 15 15 C 1.53260 * 109.73826 * 197.80910 * 14 13 12 16 16 S 1.82306 * 109.01998 * 298.18260 * 15 14 13 17 17 C 1.81970 * 101.83264 * 50.62531 * 16 15 14 18 18 H 1.09000 * 110.08978 * 70.97948 * 17 16 15 19 19 C 1.53306 * 108.80271 * 191.70963 * 17 16 15 20 20 O 1.42910 * 109.19930 * 60.30424 * 19 17 16 21 21 C 1.42879 * 114.29309 * 61.35753 * 20 19 17 22 22 C 1.53161 * 109.49099 * 299.29051 * 21 20 19 23 23 C 1.46175 * 111.00219 * 293.69551 * 13 12 10 24 24 H 1.09000 * 108.68318 * 42.85931 * 23 13 12 25 25 H 0.96999 * 120.00279 * 359.97438 * 1 2 3 26 26 H 0.96993 * 119.99890 * 359.97438 * 9 7 2 27 27 H 1.09007 * 109.46959 * 53.77906 * 12 10 9 28 28 H 1.09003 * 109.47416 * 293.77774 * 12 10 9 29 29 H 1.09004 * 109.42270 * 317.89451 * 14 13 12 30 30 H 1.08995 * 109.42399 * 77.72342 * 14 13 12 31 31 H 1.09002 * 109.63841 * 57.41725 * 15 14 13 32 32 H 1.08992 * 109.64031 * 178.04550 * 15 14 13 33 33 H 1.08999 * 109.51622 * 300.38969 * 19 17 16 34 34 H 1.08997 * 109.56206 * 180.25126 * 19 17 16 35 35 H 1.08995 * 109.46706 * 59.29198 * 21 20 19 36 36 H 1.09001 * 109.46932 * 179.28783 * 21 20 19 37 37 H 1.09002 * 109.54088 * 177.10645 * 22 21 20 38 38 H 1.08997 * 109.54440 * 297.36777 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0022 13 7 6.0505 -3.7472 0.1482 14 6 7.4825 -3.8299 -0.1467 15 6 7.8717 -5.2872 -0.4183 16 16 7.5439 -6.2782 1.0763 17 6 5.8277 -5.8131 1.4634 18 1 5.1485 -6.2410 0.7260 19 6 5.4792 -6.3310 2.8636 20 8 6.3648 -5.7403 3.8170 21 6 6.2844 -4.3156 3.8901 22 6 6.6472 -3.7128 2.5297 23 6 5.7091 -4.2838 1.4643 24 1 4.6828 -4.0027 1.7005 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3633 -0.0014 27 1 5.9247 -1.7628 0.8263 28 1 5.9234 -1.9565 -0.9431 29 1 7.7073 -3.2248 -1.0250 30 1 8.0502 -3.4558 0.7052 31 1 7.2740 -5.6786 -1.2415 32 1 8.9304 -5.3426 -0.6715 33 1 5.5882 -7.4153 2.8884 34 1 4.4511 -6.0628 3.1065 35 1 5.2694 -4.0224 4.1583 36 1 6.9797 -3.9508 4.6462 37 1 6.5365 -2.6292 2.5699 38 1 7.6779 -3.9663 2.2818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135562263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:15 Heat of formation + Delta-G solvation = -57.513255 kcal Electronic energy + Delta-G solvation = -21708.402507 eV Core-core repulsion = 18484.705060 eV Total energy + Delta-G solvation = -3223.697447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12229 -38.41823 -36.94115 -34.01872 -32.29559 -31.75716 -31.20922 -30.86196 -26.87439 -24.90641 -23.99393 -23.62584 -21.85549 -19.90013 -19.39650 -18.35226 -16.70864 -16.53389 -16.16150 -15.91912 -15.37636 -15.16816 -14.78265 -14.49275 -14.48297 -13.80402 -13.56384 -13.27379 -13.12932 -12.70974 -12.56116 -12.50423 -12.34930 -11.98648 -11.76845 -11.30242 -11.05190 -10.96695 -10.78195 -10.74081 -10.65310 -10.04183 -9.69553 -9.62235 -9.48676 -8.67615 -8.24891 -8.09994 -7.49501 -6.37355 -3.89170 1.80476 2.55860 2.96441 3.01389 3.10106 3.63862 3.65146 3.89125 4.04183 4.55668 4.63831 4.76687 4.82763 4.85482 5.06862 5.14354 5.17662 5.26408 5.33108 5.41624 5.44959 5.52721 5.56101 5.62414 5.65342 5.76900 5.83689 5.85687 5.91648 5.96726 6.25093 6.97682 7.15344 7.16794 7.51436 8.07122 8.53094 8.88346 9.35408 9.75202 10.75617 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.004779 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.768266 B = 5857.831998 C = 6185.681848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.559 6.559 12 C 0.046 3.954 13 N -0.522 5.522 14 C 0.050 3.950 15 C -0.077 4.077 16 S -0.255 6.255 17 C -0.068 4.068 18 H 0.109 0.891 19 C 0.079 3.921 20 O -0.372 6.372 21 C 0.069 3.931 22 C -0.195 4.195 23 C 0.091 3.909 24 H 0.112 0.888 25 H 0.274 0.726 26 H 0.370 0.630 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.485 -5.331 3.449 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.440 6.440 12 C -0.085 4.085 13 N -0.244 5.244 14 C -0.080 4.080 15 C -0.226 4.226 16 S -0.029 6.029 17 C -0.197 4.197 18 H 0.127 0.873 19 C 0.001 3.999 20 O -0.290 6.290 21 C -0.009 4.009 22 C -0.235 4.235 23 C -0.020 4.020 24 H 0.129 0.871 25 H 0.085 0.915 26 H 0.203 0.797 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.439 -7.046 3.735 18.271 hybrid contribution -0.044 3.001 -0.452 3.035 sum 16.396 -4.045 3.282 17.203 Atomic orbital electron populations 1.69614 1.05649 1.27569 1.49100 1.25034 0.95474 0.97963 0.97566 0.86689 0.79738 0.84105 0.78942 1.19561 1.20121 1.19581 1.19415 0.79149 0.96625 1.48264 0.86264 1.42226 1.07570 1.06119 1.66986 1.19620 0.87999 0.84602 0.84279 1.90553 1.69262 1.30799 1.53432 1.21883 0.95702 0.88954 1.01922 1.60684 1.13909 1.20512 1.29337 1.22248 0.88581 0.95717 1.01415 1.23511 1.04298 0.96588 0.98188 1.86889 1.18809 1.61619 1.35547 1.24087 0.95456 0.98529 1.01656 0.87289 1.22459 0.93802 0.98466 0.85212 1.87924 1.62370 1.19790 1.58901 1.22465 1.01115 0.80976 0.96300 1.22952 1.02696 1.00815 0.96999 1.21752 1.01319 0.92248 0.86648 0.87064 0.91546 0.79743 0.93170 0.88908 0.89804 0.92898 0.89146 0.87844 0.88071 0.91234 0.93047 0.88896 0.91070 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.23 13.96 55.50 0.77 -24.45 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 18.89 27.74 -169.99 -4.71 14.17 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 9 N -0.59 -13.51 5.09 -10.96 -0.06 -13.57 16 10 C 0.45 9.72 7.15 -10.99 -0.08 9.64 16 11 O -0.56 -14.24 14.42 5.55 0.08 -14.16 16 12 C 0.05 0.73 5.38 -4.98 -0.03 0.71 16 13 N -0.52 -7.88 4.01 -228.62 -0.92 -8.80 16 14 C 0.05 0.58 5.21 -3.94 -0.02 0.56 16 15 C -0.08 -0.88 6.67 37.29 0.25 -0.63 16 16 S -0.26 -3.39 20.05 -107.50 -2.16 -5.55 16 17 C -0.07 -0.97 3.19 -26.37 -0.08 -1.05 16 18 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 19 C 0.08 1.03 6.25 37.32 0.23 1.26 16 20 O -0.37 -5.09 10.32 -35.23 -0.36 -5.45 16 21 C 0.07 0.85 6.85 37.24 0.26 1.10 16 22 C -0.20 -2.50 4.43 -26.64 -0.12 -2.62 16 23 C 0.09 1.37 1.68 -67.90 -0.11 1.26 16 24 H 0.11 2.06 5.95 -51.93 -0.31 1.76 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 27 H 0.05 0.70 6.85 -51.92 -0.36 0.35 16 28 H 0.09 1.27 7.77 -51.93 -0.40 0.87 16 29 H 0.08 0.85 7.72 -51.93 -0.40 0.45 16 30 H 0.05 0.60 5.67 -51.93 -0.29 0.30 16 31 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.88 6.99 -51.93 -0.36 0.52 16 38 H 0.09 1.15 5.13 -51.93 -0.27 0.89 16 LS Contribution 303.34 15.07 4.57 4.57 Total: -1.00 -31.33 303.34 -7.88 -39.20 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.14 Total: 11.31 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 0.05 Total: 2.72 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.20 Total: -46.82 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.28 Total: -19.61 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.16 Total: -5.55 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.33 -7.88 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135562263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.310 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds