Wall clock time and date at job start Tue Mar 31 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48504 * 109.47191 * 270.00563 * 3 2 1 5 5 H 1.48501 * 109.46719 * 30.00746 * 3 2 1 6 6 H 1.48501 * 109.46808 * 150.00340 * 3 2 1 7 7 C 1.38948 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00235 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99923 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99757 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99981 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99788 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46975 * 173.77558 * 12 10 9 14 14 C 1.46440 * 111.00135 * 167.28100 * 13 12 10 15 15 C 1.53260 * 109.73826 * 197.80910 * 14 13 12 16 16 S 1.82306 * 109.01998 * 298.18260 * 15 14 13 17 17 C 1.81970 * 101.83264 * 50.62531 * 16 15 14 18 18 H 1.09000 * 110.08978 * 70.97948 * 17 16 15 19 19 C 1.53306 * 108.80271 * 191.70963 * 17 16 15 20 20 O 1.42910 * 109.19930 * 60.30424 * 19 17 16 21 21 C 1.42879 * 114.29309 * 61.35753 * 20 19 17 22 22 C 1.53161 * 109.49099 * 299.29051 * 21 20 19 23 23 C 1.46175 * 111.00219 * 293.69551 * 13 12 10 24 24 H 1.09000 * 108.68318 * 42.85931 * 23 13 12 25 25 H 0.96999 * 120.00279 * 359.97438 * 1 2 3 26 26 H 0.96993 * 119.99890 * 359.97438 * 9 7 2 27 27 H 1.09007 * 109.46959 * 53.77906 * 12 10 9 28 28 H 1.09003 * 109.47416 * 293.77774 * 12 10 9 29 29 H 1.09004 * 109.42270 * 317.89451 * 14 13 12 30 30 H 1.08995 * 109.42399 * 77.72342 * 14 13 12 31 31 H 1.09002 * 109.63841 * 57.41725 * 15 14 13 32 32 H 1.08992 * 109.64031 * 178.04550 * 15 14 13 33 33 H 1.08999 * 109.51622 * 300.38969 * 19 17 16 34 34 H 1.08997 * 109.56206 * 180.25126 * 19 17 16 35 35 H 1.08995 * 109.46706 * 59.29198 * 21 20 19 36 36 H 1.09001 * 109.46932 * 179.28783 * 21 20 19 37 37 H 1.09002 * 109.54088 * 177.10645 * 22 21 20 38 38 H 1.08997 * 109.54440 * 297.36777 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5607 -2.3704 -0.0022 13 7 6.0505 -3.7472 0.1482 14 6 7.4825 -3.8299 -0.1467 15 6 7.8717 -5.2872 -0.4183 16 16 7.5439 -6.2782 1.0763 17 6 5.8277 -5.8131 1.4634 18 1 5.1485 -6.2410 0.7260 19 6 5.4792 -6.3310 2.8636 20 8 6.3648 -5.7403 3.8170 21 6 6.2844 -4.3156 3.8901 22 6 6.6472 -3.7128 2.5297 23 6 5.7091 -4.2838 1.4643 24 1 4.6828 -4.0027 1.7005 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3633 -0.0014 27 1 5.9247 -1.7628 0.8263 28 1 5.9234 -1.9565 -0.9431 29 1 7.7073 -3.2248 -1.0250 30 1 8.0502 -3.4558 0.7052 31 1 7.2740 -5.6786 -1.2415 32 1 8.9304 -5.3426 -0.6715 33 1 5.5882 -7.4153 2.8884 34 1 4.4511 -6.0628 3.1065 35 1 5.2694 -4.0224 4.1583 36 1 6.9797 -3.9508 4.6462 37 1 6.5365 -2.6292 2.5699 38 1 7.6779 -3.9663 2.2818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135562263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:14 Heat of formation + Delta-G solvation = -81.730471 kcal Electronic energy + Delta-G solvation = -21709.452644 eV Core-core repulsion = 18484.705060 eV Total energy + Delta-G solvation = -3224.747584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32628 -39.96281 -38.17800 -35.96584 -33.79509 -33.31313 -32.27210 -31.99706 -28.35293 -26.25782 -25.41176 -24.69833 -22.92363 -21.34727 -20.92396 -20.16967 -17.88268 -17.71822 -17.47872 -17.09935 -16.84747 -16.49110 -16.13874 -15.81623 -15.53564 -15.19168 -15.05026 -14.69231 -14.42485 -14.24014 -13.86383 -13.61047 -13.56387 -13.25678 -13.06151 -12.86574 -12.42629 -12.12883 -12.08320 -11.99002 -11.81010 -11.75616 -11.48109 -10.73882 -10.60243 -10.37022 -10.23816 -9.27791 -8.54283 -8.42027 -6.02896 0.77931 1.28708 1.34577 1.43282 1.54784 1.94743 2.21909 2.46388 2.85839 3.08575 3.14866 3.52233 3.70940 3.78329 3.87658 4.07189 4.11183 4.23657 4.30177 4.32862 4.37298 4.42370 4.45408 4.54754 4.60831 4.68610 4.69622 4.84464 4.90712 4.93486 5.20118 5.51504 5.82334 5.96295 6.11284 6.12553 6.58911 6.87794 7.39173 7.96193 8.75637 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.004779 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.768266 B = 5857.831998 C = 6185.681848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.963 3.037 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.230 1.230 7 C -0.326 4.326 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.605 6.605 12 C 0.059 3.941 13 N -0.544 5.544 14 C 0.051 3.949 15 C -0.073 4.073 16 S -0.260 6.260 17 C -0.069 4.069 18 H 0.082 0.918 19 C 0.081 3.919 20 O -0.379 6.379 21 C 0.064 3.936 22 C -0.184 4.184 23 C 0.094 3.906 24 H 0.067 0.933 25 H 0.279 0.721 26 H 0.389 0.611 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.581 -3.312 3.448 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.213 4.213 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.154 1.154 7 C -0.455 4.455 8 H 0.072 0.928 9 N -0.234 5.234 10 C 0.238 3.762 11 O -0.489 6.489 12 C -0.072 4.072 13 N -0.267 5.267 14 C -0.077 4.077 15 C -0.221 4.221 16 S -0.033 6.033 17 C -0.199 4.199 18 H 0.101 0.899 19 C 0.002 3.998 20 O -0.297 6.297 21 C -0.013 4.013 22 C -0.224 4.224 23 C -0.017 4.017 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.224 0.776 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.152 0.848 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.573 -5.043 3.736 21.509 hybrid contribution -1.363 2.193 -0.485 2.628 sum 19.210 -2.850 3.251 19.690 Atomic orbital electron populations 1.69802 1.08186 1.29218 1.50390 1.26094 0.96411 1.02670 0.96111 0.85392 0.79520 0.76825 0.79944 1.18160 1.20180 1.15353 1.18968 0.81471 0.94819 1.50265 0.92751 1.42040 1.05781 1.07574 1.67956 1.20877 0.90783 0.83323 0.81221 1.90543 1.71209 1.32632 1.54516 1.21820 0.90356 0.90212 1.04812 1.60613 1.16466 1.20201 1.29463 1.22371 0.86169 0.96195 1.03014 1.23634 1.05934 0.96018 0.96518 1.86867 1.17109 1.62571 1.36785 1.23960 0.96147 0.98223 1.01568 0.89914 1.22460 0.93438 0.99133 0.84731 1.87910 1.62328 1.20641 1.58826 1.22629 1.01466 0.80330 0.96884 1.22871 1.02204 1.01164 0.96123 1.21577 0.99560 0.92739 0.87805 0.91456 0.91187 0.77559 0.90184 0.85604 0.87236 0.91528 0.90158 0.84792 0.86906 0.92003 0.93847 0.86398 0.90102 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 13.96 21.66 0.30 -55.55 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.96 37.84 27.74 68.60 1.90 39.74 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.23 -7.49 6.52 99.48 0.65 -6.85 16 7 C -0.33 -18.71 10.16 84.04 0.85 -17.86 16 8 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 9 N -0.59 -26.92 5.09 -306.99 -1.56 -28.48 16 10 C 0.45 19.47 7.15 87.66 0.63 20.10 16 11 O -0.61 -32.41 14.42 -3.06 -0.04 -32.45 16 12 C 0.06 1.67 5.38 85.56 0.46 2.13 16 13 N -0.54 -15.35 4.01 -877.23 -3.52 -18.87 16 14 C 0.05 0.99 5.21 86.48 0.45 1.44 16 15 C -0.07 -1.43 6.67 72.07 0.48 -0.95 16 16 S -0.26 -6.46 20.05 -56.49 -1.13 -7.59 16 17 C -0.07 -2.00 3.19 30.83 0.10 -1.90 16 18 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 19 C 0.08 2.14 6.25 72.08 0.45 2.59 16 20 O -0.38 -10.02 10.32 -148.98 -1.54 -11.56 16 21 C 0.06 1.48 6.85 72.04 0.49 1.97 16 22 C -0.18 -4.30 4.43 30.65 0.14 -4.16 16 23 C 0.09 2.79 1.68 45.19 0.08 2.87 16 24 H 0.07 2.60 5.95 -2.39 -0.01 2.59 16 25 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.39 14.53 5.76 -92.71 -0.53 14.00 16 27 H 0.08 1.87 6.85 -2.38 -0.02 1.85 16 28 H 0.13 2.84 7.77 -2.39 -0.02 2.82 16 29 H 0.11 1.63 7.72 -2.39 -0.02 1.62 16 30 H 0.07 1.17 5.67 -2.39 -0.01 1.15 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.13 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 1.72 6.99 -2.39 -0.02 1.71 16 38 H 0.10 2.17 5.13 -2.39 -0.01 2.16 16 Total: -1.00 -74.38 303.34 -0.51 -74.89 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.49 Total: 33.96 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.59 Total: 5.91 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.78 Total: -102.90 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.58 Total: -44.01 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Atomic # 16 Polarization: -6.46 SS G_CDS: -1.13 Total: -7.59 kcal Total: -74.38 -0.51 -74.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135562263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.842 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds