Wall clock time and date at job start Tue Mar 31 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99910 * 2 1 4 4 H 1.48503 * 109.46761 * 90.00411 * 3 2 1 5 5 H 1.48499 * 109.47040 * 210.00038 * 3 2 1 6 6 H 1.48500 * 109.47102 * 330.00237 * 3 2 1 7 7 C 1.37879 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99964 * 359.97438 * 7 2 1 10 10 O 1.42908 * 112.94399 * 50.33786 * 9 7 2 11 11 C 1.53941 * 113.74476 * 278.74616 * 9 7 2 12 12 N 1.47813 * 86.03558 * 222.08358 * 11 9 7 13 13 C 1.34775 * 134.45598 * 204.63883 * 12 11 9 14 14 O 1.21585 * 120.00326 * 174.29100 * 13 12 11 15 15 C 1.47583 * 120.00234 * 354.29682 * 13 12 11 16 16 C 1.40235 * 119.83480 * 172.73595 * 15 13 12 17 17 C 1.36201 * 120.37950 * 179.74564 * 16 15 13 18 18 C 1.39911 * 119.95588 * 0.49775 * 17 16 15 19 19 C 1.46268 * 133.83823 * 179.78096 * 18 17 16 20 20 C 1.34451 * 107.03325 * 179.97438 * 19 18 17 21 21 N 1.36562 * 109.97877 * 0.02562 * 20 19 18 22 22 H 0.96997 * 125.07002 * 180.02562 * 21 20 19 23 23 C 1.37820 * 109.85944 * 359.97438 * 21 20 19 24 24 C 1.38692 * 133.37399 * 180.02562 * 23 21 20 25 25 C 1.47581 * 91.05160 * 24.54760 * 12 11 9 26 26 H 0.96998 * 119.99946 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99252 * 309.66440 * 10 9 7 28 28 H 1.09004 * 113.76586 * 336.34410 * 11 9 7 29 29 H 1.08995 * 113.77501 * 107.74432 * 11 9 7 30 30 H 1.07997 * 119.81197 * 359.97438 * 16 15 13 31 31 H 1.07999 * 120.02121 * 180.25676 * 17 16 15 32 32 H 1.08000 * 126.47782 * 0.02562 * 19 18 17 33 33 H 1.08000 * 125.01235 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.16223 * 359.97438 * 24 23 21 35 35 H 1.08998 * 113.76608 * 221.15291 * 25 12 11 36 36 H 1.09002 * 113.86830 * 89.76601 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.2447 -2.5614 -1.0133 11 6 0.7561 -2.9292 1.3923 12 7 1.1919 -4.2900 1.0141 13 6 0.8427 -5.5338 1.3980 14 8 1.3112 -6.5001 0.8279 15 6 -0.1085 -5.7230 2.5104 16 6 -0.5872 -7.0070 2.8083 17 6 -1.4614 -7.1951 3.8357 18 6 -1.8942 -6.1016 4.5936 19 6 -2.8042 -5.9527 5.7291 20 6 -2.8322 -4.6455 6.0425 21 7 -2.0155 -3.9462 5.2005 22 1 -1.8721 -2.9874 5.2319 23 6 -1.4245 -4.8062 4.3002 24 6 -0.5308 -4.6245 3.2552 25 6 2.1609 -3.7401 0.0462 26 1 -0.4850 0.8400 0.0004 27 1 -0.3474 -1.7970 -1.0268 28 1 1.3274 -2.4975 2.2141 29 1 -0.3214 -2.8327 1.5248 30 1 -0.2581 -7.8522 2.2220 31 1 -1.8232 -8.1870 4.0626 32 1 -3.3496 -6.7433 6.2229 33 1 -3.4147 -4.2123 6.8422 34 1 -0.1639 -3.6362 3.0206 35 1 2.2027 -4.2899 -0.8941 36 1 3.1463 -3.5467 0.4700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193967543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:06 Heat of formation + Delta-G solvation = -0.799719 kcal Electronic energy + Delta-G solvation = -22042.106955 eV Core-core repulsion = 18685.424840 eV Total energy + Delta-G solvation = -3356.682114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.26316 -41.22635 -39.23528 -37.45452 -35.89579 -34.17523 -33.16935 -30.93484 -30.49171 -29.44985 -27.25922 -27.09615 -24.35422 -23.31366 -21.66718 -21.62458 -20.29572 -19.32125 -18.80566 -18.19973 -17.28065 -17.05995 -16.68992 -16.43019 -15.97840 -15.43607 -15.35181 -15.02176 -14.82021 -14.61828 -14.30921 -13.92837 -13.87786 -13.75517 -13.44536 -12.93361 -12.77106 -12.73914 -12.57473 -12.29716 -12.25010 -12.03486 -11.40454 -11.04704 -10.78569 -10.67235 -10.23762 -9.67387 -9.26201 -8.70785 -8.28035 -6.45342 -0.26501 0.45770 1.45519 1.49899 1.58657 1.61548 1.86807 2.03636 2.21761 2.39771 2.91450 2.95217 3.40968 3.65602 3.80249 3.94181 4.07670 4.20356 4.29193 4.36182 4.44728 4.56406 4.64328 4.65304 4.71805 4.80948 4.86143 5.02064 5.05628 5.19014 5.32451 5.52591 5.67189 5.70746 5.76896 5.90472 6.10337 6.60560 6.65901 6.74740 7.08267 7.28218 7.41684 8.78162 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.004900 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.253811 B = 5713.153915 C = 6864.068295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.036 3.964 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.221 3.779 10 O -0.586 6.586 11 C 0.092 3.908 12 N -0.631 5.631 13 C 0.565 3.435 14 O -0.595 6.595 15 C -0.135 4.135 16 C -0.105 4.105 17 C -0.081 4.081 18 C -0.100 4.100 19 C -0.229 4.229 20 C 0.080 3.920 21 N -0.587 5.587 22 H 0.429 0.571 23 C 0.061 3.939 24 C -0.098 4.098 25 C 0.110 3.890 26 H 0.276 0.724 27 H 0.387 0.613 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.219 0.781 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -4.110 14.553 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.165 4.165 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.179 3.821 10 O -0.398 6.398 11 C -0.030 4.030 12 N -0.363 5.363 13 C 0.358 3.642 14 O -0.479 6.479 15 C -0.139 4.139 16 C -0.126 4.126 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.253 4.253 20 C -0.047 4.047 21 N -0.190 5.190 22 H 0.268 0.732 23 C -0.047 4.047 24 C -0.119 4.119 25 C -0.012 4.012 26 H 0.086 0.914 27 H 0.242 0.758 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.174 0.826 32 H 0.191 0.809 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.078 0.922 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.392 -5.083 14.198 16.379 hybrid contribution 0.352 1.733 -0.372 1.807 sum -6.040 -3.350 13.826 15.455 Atomic orbital electron populations 1.69471 1.07096 1.28949 1.50079 1.25725 0.95741 1.02483 0.92552 0.85393 0.78487 0.78290 0.78489 1.19520 1.19640 1.20922 1.21712 0.94201 0.90594 1.52934 0.90850 1.20134 0.85804 0.91854 0.84270 1.86071 1.47525 1.49715 1.56488 1.24237 0.99784 0.77300 1.01711 1.50118 1.39964 1.04921 1.41282 1.18396 0.81587 0.81192 0.82989 1.90654 1.58925 1.40130 1.58225 1.19489 1.01418 0.95322 0.97704 1.20723 0.98038 0.95288 0.98515 1.20430 0.96580 0.99114 0.93836 1.19880 0.99912 0.92103 0.98696 1.22077 1.05685 0.97468 1.00088 1.22690 0.94580 0.91790 0.95690 1.41950 1.39380 1.10225 1.27438 0.73215 1.18171 0.99847 0.91468 0.95183 1.20831 0.97282 0.99373 0.94366 1.23516 0.94111 0.91969 0.91566 0.91423 0.75843 0.88552 0.91174 0.85467 0.82561 0.80929 0.76443 0.84576 0.92159 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.02 11.20 21.45 0.24 -44.78 16 2 C 0.04 1.72 5.40 84.65 0.46 2.18 16 3 Si 0.97 38.38 29.54 68.60 2.03 40.40 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -27.36 8.61 25.60 0.22 -27.14 16 8 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.22 10.64 1.40 -10.88 -0.02 10.62 16 10 O -0.59 -30.96 13.49 -148.98 -2.01 -32.97 16 11 C 0.09 3.93 5.59 86.44 0.48 4.42 16 12 N -0.63 -28.20 3.60 -843.43 -3.03 -31.23 16 13 C 0.57 25.66 7.97 86.71 0.69 26.35 16 14 O -0.60 -30.10 17.07 -3.98 -0.07 -30.17 16 15 C -0.14 -5.19 5.87 -20.08 -0.12 -5.31 16 16 C -0.11 -3.54 9.51 22.28 0.21 -3.33 16 17 C -0.08 -2.20 10.03 22.20 0.22 -1.97 16 18 C -0.10 -2.65 6.37 -20.14 -0.13 -2.78 16 19 C -0.23 -4.18 11.08 23.49 0.26 -3.92 16 20 C 0.08 1.16 11.81 83.09 0.98 2.14 16 21 N -0.59 -11.58 6.07 -187.72 -1.14 -12.72 16 22 H 0.43 6.46 8.96 -92.71 -0.83 5.63 16 23 C 0.06 1.72 7.26 38.96 0.28 2.00 16 24 C -0.10 -3.32 9.09 22.63 0.21 -3.12 16 25 C 0.11 4.97 8.23 86.48 0.71 5.68 16 26 H 0.28 12.82 8.31 -92.71 -0.77 12.05 16 27 H 0.39 20.47 6.60 -74.06 -0.49 19.98 16 28 H 0.10 3.82 7.99 -2.38 -0.02 3.81 16 29 H 0.07 3.03 6.90 -2.39 -0.02 3.01 16 30 H 0.13 4.28 7.64 -2.91 -0.02 4.25 16 31 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 32 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.22 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.14 4.67 4.04 -2.91 -0.01 4.65 16 35 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.11 4.32 8.09 -2.39 -0.02 4.30 16 Total: -1.00 -65.96 309.16 0.31 -65.64 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.17 Total: 39.98 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.47 Total: 5.83 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -3.93 Total: -88.73 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -2.08 Total: -63.13 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.40 kcal Total: -65.96 0.31 -65.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193967543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.844 kcal (2) G-P(sol) polarization free energy of solvation -65.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds