Wall clock time and date at job start Tue Mar 31 2020 02:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 S 1.65601 * 120.59741 * 124.62063 * 12 11 10 14 14 O 1.42108 * 106.39821 * 23.56743 * 13 12 11 15 15 O 1.42099 * 106.40122 * 156.48219 * 13 12 11 16 16 C 1.76192 * 107.21921 * 270.02589 * 13 12 11 17 17 C 1.35312 * 126.12587 * 269.70998 * 16 13 12 18 18 C 1.39871 * 107.92221 * 179.90338 * 17 16 13 19 19 N 1.30842 * 108.20029 * 0.37092 * 18 17 16 20 20 N 1.34945 * 126.12895 * 90.02253 * 16 13 12 21 21 H 0.97004 * 126.03602 * 359.94231 * 20 16 13 22 22 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 23 23 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 24 24 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 26 26 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 27 27 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 28 28 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 29 29 H 1.07998 * 126.04154 * 0.03840 * 17 16 13 30 30 H 1.08002 * 125.90018 * 180.13636 * 18 17 16 31 31 H 1.09001 * 109.60759 * 295.47709 * 22 12 11 32 32 H 1.08998 * 109.74755 * 175.05508 * 22 12 11 33 33 H 1.08993 * 109.60915 * 354.94812 * 23 9 7 34 34 H 1.09004 * 109.60752 * 115.28520 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 16 0.2001 -5.9803 2.3229 14 8 1.1330 -7.0318 2.1144 15 8 -0.4240 -5.7319 3.5751 16 6 -1.0997 -6.2306 1.1600 17 6 -2.3705 -5.7801 1.2748 18 6 -3.0774 -6.1923 0.1405 19 7 -2.2624 -6.8729 -0.6241 20 7 -1.0079 -6.9108 -0.0018 21 1 -0.2134 -7.3485 -0.3456 22 6 0.5346 -3.2873 2.4477 23 6 0.2345 -2.3367 1.2822 24 1 -0.4851 0.8400 -0.0004 25 1 1.0135 -4.0708 -0.8204 26 1 2.7054 -3.5085 -0.8010 27 1 3.0128 -4.2756 1.4848 28 1 2.2521 -5.6157 0.5910 29 1 -2.7681 -5.2023 2.0961 30 1 -4.1175 -5.9877 -0.0666 31 1 1.3249 -2.8662 3.0691 32 1 -0.3654 -3.4280 3.0461 33 1 0.0947 -1.3247 1.6622 34 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223265813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:38 Heat of formation + Delta-G solvation = 39.870218 kcal Electronic energy + Delta-G solvation = -21509.066701 eV Core-core repulsion = 18186.051775 eV Total energy + Delta-G solvation = -3323.014926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19426 -37.73098 -37.32982 -35.91176 -33.93644 -31.71336 -31.20006 -30.38764 -30.26822 -26.52339 -23.41099 -23.01096 -22.68281 -21.54419 -20.19066 -19.34703 -18.45944 -17.63813 -16.28690 -15.83921 -15.56697 -14.93650 -14.76296 -14.24899 -14.15313 -13.84407 -13.71958 -13.64558 -13.52829 -13.06001 -12.34661 -12.20641 -12.18312 -11.69263 -11.56239 -11.21763 -10.96204 -10.90486 -10.81557 -10.51709 -10.30776 -10.08199 -10.00799 -9.78975 -9.11412 -8.92019 -8.56450 -6.78084 -5.90360 -3.35098 0.28119 1.22858 2.52637 2.66165 3.03825 3.30754 3.39556 3.41182 3.69350 4.32692 4.39890 4.68541 4.96765 5.20216 5.25768 5.30327 5.40389 5.61916 5.65894 5.79244 5.91380 6.15999 6.25388 6.30902 6.38208 6.48133 6.68766 6.76295 6.93535 7.16614 7.31463 7.47180 7.68993 8.31117 9.07388 9.69840 10.26499 11.17328 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023466 B = 0.005683 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.925924 B = 4926.083087 C = 5332.941594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.130 3.870 11 C 0.102 3.898 12 N -0.977 5.977 13 S 2.704 3.296 14 O -0.959 6.959 15 O -0.942 6.942 16 C -0.482 4.482 17 C -0.148 4.148 18 C 0.035 3.965 19 N -0.256 5.256 20 N -0.414 5.414 21 H 0.446 0.554 22 C 0.093 3.907 23 C 0.156 3.844 24 H 0.255 0.745 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.165 0.835 30 H 0.194 0.806 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 -10.664 3.078 11.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.002 3.998 11 C -0.025 4.025 12 N -0.818 5.818 13 S 2.787 3.213 14 O -0.949 6.949 15 O -0.931 6.931 16 C -0.691 4.691 17 C -0.180 4.180 18 C -0.151 4.151 19 N -0.082 5.082 20 N -0.126 5.126 21 H 0.292 0.708 22 C -0.033 4.033 23 C 0.028 3.972 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.182 0.818 30 H 0.211 0.789 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.981 -11.695 2.664 12.157 hybrid contribution 0.072 1.354 -0.178 1.368 sum -1.909 -10.340 2.486 10.805 Atomic orbital electron populations 1.70017 1.05307 1.25670 1.53496 1.25075 0.95302 0.98574 1.00541 0.86208 0.79380 0.83727 0.77330 1.20208 1.21729 1.21429 1.19235 0.92775 0.84606 1.41963 0.91411 1.43918 1.36516 1.01499 1.49072 1.21370 0.98350 0.87626 0.92425 1.22221 0.87879 1.00376 0.92026 1.57419 1.42583 1.21961 1.59819 1.01985 0.72574 0.73106 0.73588 1.93567 1.60335 1.54576 1.86416 1.93602 1.77550 1.85100 1.36844 1.34036 1.18329 1.09778 1.06942 1.21653 0.91237 1.03937 1.01193 1.24136 1.00553 0.97593 0.92785 1.77188 0.90134 1.20415 1.20421 1.45935 1.11230 1.41421 1.14032 0.70803 1.22444 0.99763 0.82751 0.98300 1.21204 0.89126 0.98780 0.88042 0.93491 0.96182 0.91378 0.90510 0.90495 0.81757 0.78904 0.90872 0.90110 0.88066 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 11.20 55.49 0.62 -24.13 16 2 C 0.00 0.11 4.91 -17.44 -0.09 0.02 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.58 9.57 -15.06 -0.14 -6.73 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -13.58 2.96 -171.77 -0.51 -14.09 16 10 C 0.13 2.47 6.70 -3.37 -0.02 2.45 16 11 C 0.10 1.60 6.57 -3.37 -0.02 1.58 16 12 N -0.98 -15.66 3.26 -113.01 -0.37 -16.03 16 13 S 2.70 40.53 5.85 -107.50 -0.63 39.90 16 14 O -0.96 -15.27 16.71 -57.17 -0.96 -16.22 16 15 O -0.94 -15.67 16.54 -57.17 -0.95 -16.62 16 16 C -0.48 -6.97 7.24 -17.23 -0.12 -7.09 16 17 C -0.15 -2.02 10.55 -40.01 -0.42 -2.45 16 18 C 0.03 0.45 12.03 -17.36 -0.21 0.24 16 19 N -0.26 -3.72 12.70 30.63 0.39 -3.33 16 20 N -0.41 -5.74 7.36 31.09 0.23 -5.51 16 21 H 0.45 5.08 8.96 -182.61 -1.64 3.44 16 22 C 0.09 1.62 6.54 -3.60 -0.02 1.60 16 23 C 0.16 3.38 5.51 -3.60 -0.02 3.36 16 24 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.01 7.09 -51.93 -0.37 0.65 16 29 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.25 7.10 -51.93 -0.37 0.88 16 33 H 0.10 2.46 6.00 -51.93 -0.31 2.15 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -32.13 299.07 -8.95 -41.08 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.18 Total: 1.79 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.07 Total: -7.02 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.36 Total: -63.09 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.90 Total: -32.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: 40.53 SS G_CDS: -0.63 Total: 39.90 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.13 -8.95 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223265813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.949 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds