Wall clock time and date at job start Tue Mar 31 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 N 1.46496 * 109.47572 * 120.00045 * 2 1 3 5 5 C 1.46495 * 120.00004 * 300.00827 * 4 2 1 6 6 C 1.34776 * 120.00019 * 119.99723 * 4 2 1 7 7 O 1.21285 * 120.00124 * 355.25179 * 6 4 2 8 8 C 1.50703 * 120.00011 * 175.24373 * 6 4 2 9 9 H 1.08998 * 109.46378 * 23.78605 * 8 6 4 10 10 C 1.55399 * 109.46915 * 263.79802 * 8 6 4 11 11 S 1.84255 * 99.76238 * 199.61221 * 10 8 6 12 12 C 1.83568 * 94.86052 * 33.14146 * 11 10 8 13 13 N 1.46131 * 109.46973 * 143.73205 * 8 6 4 14 14 C 1.34772 * 122.49972 * 330.77811 * 13 8 6 15 15 O 1.21688 * 120.00050 * 354.10497 * 14 13 8 16 16 C 1.46379 * 120.00399 * 174.11284 * 14 13 8 17 17 H 1.08005 * 119.99280 * 6.02141 * 16 14 13 18 18 C 1.40046 * 120.00315 * 186.02493 * 16 14 13 19 19 N 1.30672 * 119.99760 * 5.97078 * 18 16 14 20 20 Si 1.86799 * 119.99943 * 185.97754 * 18 16 14 21 21 H 1.48498 * 109.47180 * 94.98739 * 20 18 16 22 22 H 1.48503 * 109.47062 * 214.99104 * 20 18 16 23 23 H 1.48497 * 109.47094 * 334.98935 * 20 18 16 24 24 H 1.08994 * 109.47508 * 299.99411 * 1 2 3 25 25 H 1.09000 * 109.47433 * 60.00157 * 1 2 3 26 26 H 1.09008 * 109.46805 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47205 * 240.00785 * 2 1 3 28 28 H 1.09008 * 109.47064 * 59.99973 * 3 2 1 29 29 H 1.08995 * 109.47395 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47712 * 300.00649 * 3 2 1 31 31 H 1.09002 * 109.47392 * 95.45590 * 5 4 2 32 32 H 1.09004 * 109.47108 * 215.45573 * 5 4 2 33 33 H 1.09006 * 109.47141 * 335.45530 * 5 4 2 34 34 H 1.09000 * 111.34444 * 317.24124 * 10 8 6 35 35 H 1.08996 * 111.35164 * 81.92824 * 10 8 6 36 36 H 1.09000 * 110.33400 * 100.36372 * 12 11 10 37 37 H 1.08996 * 110.33884 * 222.50771 * 12 11 10 38 38 H 0.97007 * 119.99742 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.7933 -1.7864 1.0724 7 8 3.0154 -2.2512 -0.0256 8 6 3.3838 -2.4340 2.2983 9 1 2.7792 -2.1815 3.1694 10 6 4.8348 -1.9188 2.5082 11 16 5.4848 -3.2521 3.6012 12 6 4.4803 -4.5843 2.8357 13 7 3.4012 -3.8846 2.1225 14 6 2.4959 -4.5328 1.3631 15 8 1.5595 -3.9241 0.8799 16 6 2.6389 -5.9691 1.1197 17 1 3.4121 -6.5282 1.6258 18 6 1.7733 -6.6183 0.2305 19 7 0.9150 -5.9247 -0.4693 20 14 1.8455 -8.4757 0.0452 21 1 0.8324 -9.1014 0.9325 22 1 1.5630 -8.8437 -1.3655 23 1 3.1985 -8.9584 0.4213 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 0.7927 -0.7293 2.8976 32 1 2.5024 -0.3426 3.2069 33 1 1.4349 0.8736 2.4656 34 1 5.3811 -1.8768 1.5659 35 1 4.8438 -0.9522 3.0118 36 1 5.0855 -5.1605 2.1359 37 1 4.0672 -5.2368 3.6049 38 1 0.3152 -6.3744 -1.0849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274250708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:33 Heat of formation + Delta-G solvation = -51.403147 kcal Electronic energy + Delta-G solvation = -22026.274706 eV Core-core repulsion = 18802.842214 eV Total energy + Delta-G solvation = -3223.432492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85512 -37.60160 -35.67123 -34.71063 -32.49810 -32.24802 -30.28370 -27.02757 -26.59654 -26.32010 -26.27735 -23.67421 -21.40998 -19.57002 -18.26292 -17.36095 -16.65739 -16.44015 -15.52243 -15.46815 -14.78174 -14.56819 -14.10610 -13.95924 -13.67737 -13.24246 -12.96497 -12.79912 -12.55055 -12.41563 -12.24770 -12.16389 -11.92158 -11.77189 -11.66604 -11.31002 -11.18649 -11.05797 -10.91589 -10.58386 -10.43741 -10.32927 -10.17864 -8.99475 -8.87107 -8.17433 -7.78170 -7.60733 -7.39964 -6.25447 -4.69057 1.98479 2.36784 3.12351 3.17259 3.21188 3.24509 3.49016 3.97617 4.27261 4.49720 4.82494 4.90357 5.12812 5.23698 5.26097 5.30298 5.45450 5.49668 5.61740 5.63931 5.71622 5.78709 5.80051 5.89348 5.94147 5.98588 6.11111 6.13827 6.40595 6.55423 6.95367 7.10660 7.38600 7.82510 7.95544 8.20800 8.91909 8.98053 9.21967 10.48760 10.68224 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.007222 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.535788 B = 3875.951616 C = 5419.805984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 C -0.158 4.158 4 N -0.617 5.617 5 C 0.081 3.919 6 C 0.536 3.464 7 O -0.497 6.497 8 C 0.126 3.874 9 H 0.081 0.919 10 C -0.061 4.061 11 S -0.308 6.308 12 C 0.195 3.805 13 N -0.633 5.633 14 C 0.571 3.429 15 O -0.546 6.546 16 C -0.538 4.538 17 H 0.070 0.930 18 C 0.090 3.910 19 N -0.760 5.760 20 Si 0.908 3.092 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.264 1.264 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 11.192 5.748 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 C -0.217 4.217 4 N -0.354 5.354 5 C -0.062 4.062 6 C 0.321 3.679 7 O -0.369 6.369 8 C 0.016 3.984 9 H 0.099 0.901 10 C -0.210 4.210 11 S -0.082 6.082 12 C -0.040 4.040 13 N -0.376 5.376 14 C 0.377 3.623 15 O -0.426 6.426 16 C -0.575 4.575 17 H 0.088 0.912 18 C -0.131 4.131 19 N -0.388 5.388 20 Si 0.733 3.267 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.188 1.188 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.342 11.212 5.612 12.976 hybrid contribution -0.751 -0.936 -0.771 1.427 sum 2.591 10.276 4.840 11.651 Atomic orbital electron populations 1.22100 0.95273 1.03093 1.01150 1.20884 0.94079 0.92012 0.89644 1.22160 1.01371 0.96319 1.01807 1.47681 1.52334 1.29189 1.06187 1.21679 1.00719 0.99500 0.84325 1.20031 0.78339 0.78987 0.90529 1.90715 1.58743 1.59691 1.27731 1.21451 0.94467 0.85470 0.96983 0.90149 1.24552 0.96124 0.98811 1.01540 1.87764 1.61418 1.08764 1.50243 1.23579 0.89701 0.93036 0.97683 1.48722 1.32393 1.01719 1.54801 1.18170 0.79987 0.87994 0.76135 1.90617 1.32345 1.67806 1.51822 1.20816 1.17781 0.91291 1.27608 0.91172 1.25686 0.93936 0.99655 0.93837 1.70011 1.15074 1.36339 1.17376 0.86341 0.79366 0.83008 0.78004 1.19736 1.20405 1.18777 0.92988 0.92168 0.91430 0.88344 0.92614 0.92566 0.91783 0.92890 0.91711 0.91251 0.88261 0.86779 0.89334 0.89120 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.19 37.16 0.34 -1.96 16 2 C 0.14 2.16 3.24 -67.93 -0.22 1.94 16 3 C -0.16 -1.82 9.18 37.16 0.34 -1.47 16 4 N -0.62 -10.56 2.76 -173.93 -0.48 -11.04 16 5 C 0.08 1.03 8.83 59.84 0.53 1.56 16 6 C 0.54 11.47 4.95 -10.98 -0.05 11.42 16 7 O -0.50 -13.23 14.05 -17.68 -0.25 -13.48 16 8 C 0.13 2.45 2.52 -68.01 -0.17 2.27 16 9 H 0.08 1.44 6.19 -51.93 -0.32 1.12 16 10 C -0.06 -0.94 7.04 38.43 0.27 -0.67 16 11 S -0.31 -4.97 23.33 -107.50 -2.51 -7.48 16 12 C 0.19 3.74 6.49 60.15 0.39 4.13 16 13 N -0.63 -14.61 3.13 -170.55 -0.53 -15.14 16 14 C 0.57 16.25 6.81 -12.99 -0.09 16.16 16 15 O -0.55 -17.25 12.27 -18.04 -0.22 -17.48 16 16 C -0.54 -15.17 8.93 -35.63 -0.32 -15.49 16 17 H 0.07 1.80 6.81 -52.48 -0.36 1.45 16 18 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 19 N -0.76 -22.85 11.89 55.55 0.66 -22.19 16 20 Si 0.91 20.23 29.56 -169.99 -5.03 15.21 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 28 H 0.05 0.55 6.67 -51.92 -0.35 0.20 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.71 6.51 -51.93 -0.34 0.38 16 33 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 34 H 0.10 1.62 8.10 -51.93 -0.42 1.20 16 35 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.09 1.72 7.81 -51.93 -0.41 1.32 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -36.13 319.40 -7.99 -44.12 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.37 Total: 2.37 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 0.92 Total: 20.29 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.35 Total: -48.37 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.47 Total: -30.95 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.51 Total: -7.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.13 -7.99 -44.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274250708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.279 kcal (2) G-P(sol) polarization free energy of solvation -36.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds