Wall clock time and date at job start Tue Mar 31 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 N 1.46496 * 109.47572 * 120.00045 * 2 1 3 5 5 C 1.46495 * 120.00004 * 300.00827 * 4 2 1 6 6 C 1.34776 * 120.00019 * 119.99723 * 4 2 1 7 7 O 1.21285 * 120.00124 * 355.25179 * 6 4 2 8 8 C 1.50703 * 120.00011 * 175.24373 * 6 4 2 9 9 H 1.08998 * 109.46378 * 23.78605 * 8 6 4 10 10 C 1.55399 * 109.46915 * 263.79802 * 8 6 4 11 11 S 1.84255 * 99.76238 * 199.61221 * 10 8 6 12 12 C 1.83568 * 94.86052 * 33.14146 * 11 10 8 13 13 N 1.46131 * 109.46973 * 143.73205 * 8 6 4 14 14 C 1.34772 * 122.49972 * 330.77811 * 13 8 6 15 15 O 1.21688 * 120.00050 * 354.10497 * 14 13 8 16 16 C 1.46379 * 120.00399 * 174.11284 * 14 13 8 17 17 H 1.08005 * 119.99280 * 6.02141 * 16 14 13 18 18 C 1.40046 * 120.00315 * 186.02493 * 16 14 13 19 19 N 1.30672 * 119.99760 * 5.97078 * 18 16 14 20 20 Si 1.86799 * 119.99943 * 185.97754 * 18 16 14 21 21 H 1.48498 * 109.47180 * 94.98739 * 20 18 16 22 22 H 1.48503 * 109.47062 * 214.99104 * 20 18 16 23 23 H 1.48497 * 109.47094 * 334.98935 * 20 18 16 24 24 H 1.08994 * 109.47508 * 299.99411 * 1 2 3 25 25 H 1.09000 * 109.47433 * 60.00157 * 1 2 3 26 26 H 1.09008 * 109.46805 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47205 * 240.00785 * 2 1 3 28 28 H 1.09008 * 109.47064 * 59.99973 * 3 2 1 29 29 H 1.08995 * 109.47395 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47712 * 300.00649 * 3 2 1 31 31 H 1.09002 * 109.47392 * 95.45590 * 5 4 2 32 32 H 1.09004 * 109.47108 * 215.45573 * 5 4 2 33 33 H 1.09006 * 109.47141 * 335.45530 * 5 4 2 34 34 H 1.09000 * 111.34444 * 317.24124 * 10 8 6 35 35 H 1.08996 * 111.35164 * 81.92824 * 10 8 6 36 36 H 1.09000 * 110.33400 * 100.36372 * 12 11 10 37 37 H 1.08996 * 110.33884 * 222.50771 * 12 11 10 38 38 H 0.97007 * 119.99742 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.7933 -1.7864 1.0724 7 8 3.0154 -2.2512 -0.0256 8 6 3.3838 -2.4340 2.2983 9 1 2.7792 -2.1815 3.1694 10 6 4.8348 -1.9188 2.5082 11 16 5.4848 -3.2521 3.6012 12 6 4.4803 -4.5843 2.8357 13 7 3.4012 -3.8846 2.1225 14 6 2.4959 -4.5328 1.3631 15 8 1.5595 -3.9241 0.8799 16 6 2.6389 -5.9691 1.1197 17 1 3.4121 -6.5282 1.6258 18 6 1.7733 -6.6183 0.2305 19 7 0.9150 -5.9247 -0.4693 20 14 1.8455 -8.4757 0.0452 21 1 0.8324 -9.1014 0.9325 22 1 1.5630 -8.8437 -1.3655 23 1 3.1985 -8.9584 0.4213 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 0.7927 -0.7293 2.8976 32 1 2.5024 -0.3426 3.2069 33 1 1.4349 0.8736 2.4656 34 1 5.3811 -1.8768 1.5659 35 1 4.8438 -0.9522 3.0118 36 1 5.0855 -5.1605 2.1359 37 1 4.0672 -5.2368 3.6049 38 1 0.3152 -6.3744 -1.0849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274250708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:33 Heat of formation + Delta-G solvation = -76.800558 kcal Electronic energy + Delta-G solvation = -22027.376021 eV Core-core repulsion = 18802.842214 eV Total energy + Delta-G solvation = -3224.533807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44924 -39.33798 -37.26033 -36.57039 -34.64141 -33.62589 -31.75310 -28.39226 -28.09818 -27.92634 -27.72933 -25.21233 -23.04929 -21.12544 -19.84607 -18.94326 -18.43574 -18.06339 -17.38017 -16.90063 -16.33264 -16.02180 -15.74501 -15.62693 -14.96678 -14.74367 -14.47570 -14.33053 -14.04349 -13.84278 -13.72403 -13.40677 -13.15864 -13.11182 -13.01218 -12.93324 -12.85210 -12.73630 -12.44410 -12.23956 -12.05264 -11.78822 -11.71133 -10.95372 -10.63113 -9.83922 -9.58180 -9.37532 -8.85024 -8.34310 -6.88465 0.63218 0.92604 1.35689 1.37450 1.52690 1.65260 2.09762 2.19723 2.43840 2.55322 3.35668 3.52441 3.61376 3.86605 3.99598 4.15877 4.22008 4.29126 4.33858 4.36373 4.43030 4.56919 4.60789 4.71061 4.72052 4.83862 4.92580 5.05295 5.22860 5.27207 5.33493 5.37167 5.77213 5.89545 6.14854 6.48379 6.82610 7.18445 7.39686 8.39974 8.61953 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.014838 B = 0.007222 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.535788 B = 3875.951616 C = 5419.805984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.128 3.872 3 C -0.143 4.143 4 N -0.613 5.613 5 C 0.072 3.928 6 C 0.527 3.473 7 O -0.567 6.567 8 C 0.119 3.881 9 H 0.100 0.900 10 C -0.053 4.053 11 S -0.256 6.256 12 C 0.179 3.821 13 N -0.642 5.642 14 C 0.558 3.442 15 O -0.591 6.591 16 C -0.568 4.568 17 H 0.088 0.912 18 C 0.031 3.969 19 N -0.817 5.817 20 Si 0.995 3.005 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.247 1.247 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.015 0.985 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 12.482 7.969 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.201 4.201 4 N -0.348 5.348 5 C -0.070 4.070 6 C 0.313 3.687 7 O -0.444 6.444 8 C 0.010 3.990 9 H 0.118 0.882 10 C -0.203 4.203 11 S -0.030 6.030 12 C -0.055 4.055 13 N -0.384 5.384 14 C 0.363 3.637 15 O -0.475 6.475 16 C -0.604 4.604 17 H 0.106 0.894 18 C -0.184 4.184 19 N -0.446 5.446 20 Si 0.815 3.185 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.170 1.170 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.180 0.820 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.448 12.563 7.913 15.499 hybrid contribution -1.064 -1.204 -1.400 2.131 sum 3.384 11.359 6.513 13.524 Atomic orbital electron populations 1.22030 0.94483 1.00459 1.03722 1.21040 0.94701 0.94176 0.87643 1.22036 1.01140 0.92821 1.04073 1.47848 1.50524 1.27966 1.08451 1.22020 1.01259 1.01539 0.82164 1.20502 0.78513 0.79526 0.90155 1.90674 1.61603 1.61953 1.30148 1.21726 0.97261 0.83396 0.96609 0.88239 1.24648 0.93025 1.00754 1.01841 1.87581 1.59928 1.06643 1.48854 1.23653 0.89377 0.94758 0.97760 1.48422 1.32232 1.03706 1.53998 1.18407 0.80353 0.88591 0.76347 1.90572 1.34410 1.68894 1.53590 1.21366 1.18687 0.92110 1.28227 0.89444 1.26944 0.92862 1.05848 0.92771 1.70196 1.16558 1.39202 1.18656 0.85040 0.80288 0.75040 0.78166 1.18497 1.19978 1.17007 0.90057 0.89904 0.96544 0.93165 0.89716 0.92819 0.90067 0.93938 0.89417 0.87282 0.89298 0.81967 0.90202 0.88234 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.19 71.98 0.66 -3.71 16 2 C 0.13 4.07 3.24 44.99 0.15 4.22 16 3 C -0.14 -2.92 9.18 71.98 0.66 -2.26 16 4 N -0.61 -20.94 2.76 -822.59 -2.27 -23.21 16 5 C 0.07 1.63 8.83 127.77 1.13 2.76 16 6 C 0.53 23.27 4.95 87.66 0.43 23.70 16 7 O -0.57 -32.30 14.05 19.17 0.27 -32.03 16 8 C 0.12 4.57 2.52 45.14 0.11 4.68 16 9 H 0.10 3.41 6.19 -2.39 -0.01 3.39 16 10 C -0.05 -1.53 7.04 72.81 0.51 -1.02 16 11 S -0.26 -7.60 23.33 -56.49 -1.32 -8.92 16 12 C 0.18 6.79 6.49 127.66 0.83 7.62 16 13 N -0.64 -30.24 3.13 -811.72 -2.54 -32.78 16 14 C 0.56 33.21 6.81 86.36 0.59 33.80 16 15 O -0.59 -39.71 12.27 17.91 0.22 -39.49 16 16 C -0.57 -33.06 8.93 24.83 0.22 -32.84 16 17 H 0.09 4.57 6.81 -2.91 -0.02 4.55 16 18 C 0.03 1.79 5.49 85.30 0.47 2.26 16 19 N -0.82 -51.73 11.89 21.84 0.26 -51.47 16 20 Si 1.00 42.34 29.56 68.60 2.03 44.37 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 24 H 0.08 1.87 7.67 -2.39 -0.02 1.86 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.05 2.08 6.91 -2.39 -0.02 2.07 16 28 H 0.08 1.26 6.67 -2.38 -0.02 1.24 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.60 6.51 -2.38 -0.02 1.58 16 33 H 0.11 1.62 6.44 -2.38 -0.02 1.61 16 34 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 35 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.13 7.81 -2.39 -0.02 3.12 16 37 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 38 H 0.27 15.73 8.29 -92.70 -0.77 14.97 16 Total: -1.00 -87.34 319.40 3.47 -83.87 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 1.06 Total: 20.45 kcal Atomic # 6 Polarization: 33.46 SS G_CDS: 5.76 Total: 39.22 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.55 Total: -107.46 kcal Atomic # 8 Polarization: -72.01 SS G_CDS: 0.49 Total: -71.52 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.32 Total: -8.92 kcal Total: -87.34 3.47 -83.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274250708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.066 kcal (2) G-P(sol) polarization free energy of solvation -87.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds