Wall clock time and date at job start Tue Mar 31 2020 02:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47135 * 2 1 4 4 N 1.46497 * 109.47251 * 179.97438 * 3 2 1 5 5 C 1.37103 * 119.99885 * 264.75272 * 4 3 2 6 6 H 1.08000 * 120.00080 * 146.17119 * 5 4 3 7 7 C 1.38945 * 119.99777 * 326.16506 * 5 4 3 8 8 N 1.31411 * 120.00558 * 337.67645 * 7 5 4 9 9 Si 1.86801 * 119.99798 * 157.67661 * 7 5 4 10 10 H 1.48500 * 109.47085 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47139 * 119.99831 * 9 7 5 12 12 H 1.48491 * 109.47370 * 240.00031 * 9 7 5 13 13 C 1.34774 * 119.99971 * 84.75153 * 4 3 2 14 14 O 1.21297 * 119.99998 * 180.02562 * 13 4 3 15 15 C 1.50704 * 120.00239 * 359.97438 * 13 4 3 16 16 S 1.80993 * 109.47414 * 180.02562 * 15 13 4 17 17 C 1.76200 * 100.00150 * 180.02562 * 16 15 13 18 18 N 1.30183 * 125.67641 * 359.97438 * 17 16 15 19 19 N 1.40169 * 108.03119 * 179.76788 * 18 17 16 20 20 H 0.97003 * 126.29604 * 180.30602 * 19 18 17 21 21 C 1.34901 * 107.40993 * 0.41150 * 19 18 17 22 22 O 1.21834 * 126.21650 * 179.85473 * 21 19 18 23 23 N 1.34797 * 107.57556 * 359.59219 * 21 19 18 24 24 H 0.96999 * 125.82528 * 180.22467 * 23 21 19 25 25 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47100 * 299.99864 * 1 2 3 27 27 H 1.09000 * 109.46982 * 60.00210 * 1 2 3 28 28 H 1.09001 * 109.47100 * 240.00136 * 2 1 3 29 29 H 1.09003 * 109.46934 * 120.00322 * 2 1 3 30 30 H 1.09002 * 109.46828 * 59.99571 * 3 2 1 31 31 H 1.09005 * 109.46758 * 300.00157 * 3 2 1 32 32 H 0.96995 * 120.00587 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.46607 * 60.00236 * 15 13 4 34 34 H 1.08996 * 109.47358 * 300.00847 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5513 1.1833 6 1 5.1328 1.0401 1.3102 7 6 3.6712 2.3194 2.2184 8 7 2.8002 3.2687 1.9596 9 14 4.2120 2.0026 3.9781 10 1 5.1934 0.8883 4.0014 11 1 4.8426 3.2284 4.5305 12 1 3.0307 1.6396 4.8013 13 6 4.1794 1.3356 -1.1614 14 8 5.3923 1.3352 -1.1608 15 6 3.4264 1.2154 -2.4613 16 16 4.6031 1.0888 -3.8307 17 6 3.4836 0.9643 -5.1856 18 7 2.1846 0.9722 -5.1004 19 7 1.6641 0.8585 -6.3969 20 1 0.7249 0.8416 -6.6391 21 6 2.7093 0.7744 -7.2456 22 8 2.6456 0.6627 -8.4571 23 7 3.8371 0.8422 -6.5103 24 1 4.7428 0.8099 -6.8559 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 2.4377 3.8046 2.6823 33 1 2.7996 2.0961 -2.6007 34 1 2.8000 0.3238 -2.4373 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274968200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:44 Heat of formation + Delta-G solvation = -17.196158 kcal Electronic energy + Delta-G solvation = -20191.751524 eV Core-core repulsion = 16866.262014 eV Total energy + Delta-G solvation = -3325.489509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.42154 -40.48940 -38.52210 -37.18276 -34.82969 -34.58811 -33.06523 -31.95118 -30.72216 -27.46184 -26.13116 -24.64628 -23.74122 -22.49890 -21.32028 -20.19749 -18.83926 -18.03319 -17.92166 -17.65944 -17.63230 -16.85435 -16.73655 -16.19080 -15.98555 -15.37944 -14.86503 -14.49987 -14.44972 -14.05465 -13.60562 -13.41187 -13.36785 -13.11073 -12.94944 -12.60736 -12.28052 -12.25363 -12.06217 -11.96299 -11.74556 -11.67669 -11.50494 -10.88264 -10.55365 -10.40380 -9.49332 -8.84425 -8.35260 -6.04641 -0.23917 0.55235 0.70268 1.24654 1.37288 1.46260 1.46477 1.58648 1.92342 2.29924 2.74525 2.97520 3.01471 3.58715 3.82256 4.04264 4.15577 4.31049 4.37301 4.44459 4.63394 4.79151 5.02696 5.17657 5.28800 5.33299 5.43594 5.50241 5.63473 5.76830 6.17944 6.22036 6.46253 6.94094 7.12778 7.40967 7.95952 8.66598 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.004126 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.164803 B = 6785.246332 C = 7476.210064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.097 3.903 4 N -0.438 5.438 5 C -0.341 4.341 6 H 0.070 0.930 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.977 3.023 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.457 3.543 14 O -0.613 6.613 15 C -0.128 4.128 16 S 0.106 5.894 17 C 0.247 3.753 18 N -0.289 5.289 19 N -0.531 5.531 20 H 0.467 0.533 21 C 0.652 3.348 22 O -0.590 6.590 23 N -0.623 5.623 24 H 0.454 0.546 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.275 0.725 33 H 0.126 0.874 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -4.659 -8.521 11.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.026 4.026 4 N -0.156 5.156 5 C -0.469 4.469 6 H 0.088 0.912 7 C -0.194 4.194 8 N -0.519 5.519 9 Si 0.801 3.199 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.190 1.190 13 C 0.245 3.755 14 O -0.500 6.500 15 C -0.279 4.279 16 S 0.332 5.668 17 C -0.140 4.140 18 N -0.121 5.121 19 N -0.284 5.284 20 H 0.318 0.682 21 C 0.347 3.653 22 O -0.466 6.466 23 N -0.278 5.278 24 H 0.299 0.701 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.735 -4.523 -8.563 10.780 hybrid contribution -0.533 0.084 0.137 0.556 sum -5.268 -4.439 -8.426 10.884 Atomic orbital electron populations 1.21629 0.93506 1.02328 1.02156 1.21876 0.97288 0.96489 1.01429 1.21867 0.79615 0.96982 1.04136 1.43670 1.06225 1.61518 1.04144 1.19468 1.07252 1.29976 0.90212 0.91184 1.26002 0.96956 0.92873 1.03569 1.69974 1.30904 1.16764 1.34267 0.85125 0.78622 0.78280 0.77853 1.19460 1.20580 1.19001 1.20058 0.87572 0.82878 0.85038 1.90541 1.15252 1.57305 1.86907 1.23760 1.01393 1.09398 0.93372 1.86713 1.00774 1.90083 0.89241 1.26588 0.95895 1.00451 0.91109 1.77591 1.05503 1.27069 1.01904 1.46601 1.09735 1.69337 1.02728 0.68221 1.16818 0.82145 0.81048 0.85302 1.91137 1.84939 1.60530 1.10043 1.43462 1.11448 1.68154 1.04757 0.70083 0.91340 0.93200 0.91584 0.92043 0.93372 0.88878 0.91446 0.91522 0.85576 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.13 -4.18 6.17 30.60 0.19 -4.00 16 3 C 0.10 3.79 4.71 86.38 0.41 4.19 16 4 N -0.44 -20.54 2.56 -635.53 -1.63 -22.17 16 5 C -0.34 -18.04 8.98 84.04 0.75 -17.29 16 6 H 0.07 3.99 7.70 -2.91 -0.02 3.96 16 7 C 0.01 0.47 4.92 84.93 0.42 0.89 16 8 N -0.88 -44.48 11.33 21.66 0.25 -44.23 16 9 Si 0.98 39.90 29.61 68.60 2.03 41.93 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 13 C 0.46 20.27 7.61 87.66 0.67 20.93 16 14 O -0.61 -31.66 15.69 -3.08 -0.05 -31.71 16 15 C -0.13 -4.04 4.28 71.24 0.30 -3.74 16 16 S 0.11 2.93 21.45 -56.49 -1.21 1.72 16 17 C 0.25 5.86 8.33 179.50 1.49 7.35 16 18 N -0.29 -6.99 11.98 -56.74 -0.68 -7.67 16 19 N -0.53 -11.53 7.39 -184.36 -1.36 -12.89 16 20 H 0.47 7.46 8.96 -213.27 -1.91 5.54 16 21 C 0.65 16.41 9.41 179.01 1.68 18.09 16 22 O -0.59 -18.45 18.06 -4.78 -0.09 -18.54 16 23 N -0.62 -13.23 6.09 -323.75 -1.97 -15.21 16 24 H 0.45 7.16 8.96 -92.71 -0.83 6.33 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.78 6.59 -2.39 -0.02 1.77 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.09 4.13 5.34 -2.39 -0.01 4.12 16 31 H 0.07 2.34 6.66 -2.38 -0.02 2.32 16 32 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 33 H 0.13 3.73 7.41 -2.40 -0.02 3.71 16 34 H 0.13 3.66 6.53 -2.40 -0.02 3.64 16 Total: -1.00 -66.57 308.84 0.35 -66.22 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -1.57 Total: 18.78 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 6.63 Total: 23.76 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -5.39 Total: -102.17 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.13 Total: -50.25 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.21 Total: 1.72 kcal Total: -66.57 0.35 -66.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274968200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.023 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds