Wall clock time and date at job start Tue Mar 31 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47284 * 2 1 4 4 C 1.36942 * 119.99460 * 293.76149 * 3 2 1 5 5 H 1.07997 * 119.99610 * 149.39189 * 4 3 2 6 6 C 1.38811 * 120.00123 * 329.38566 * 4 3 2 7 7 N 1.31625 * 119.99850 * 337.58677 * 6 4 3 8 8 Si 1.86801 * 119.99984 * 157.58979 * 6 4 3 9 9 H 1.48503 * 109.46967 * 89.99803 * 8 6 4 10 10 H 1.48497 * 109.47108 * 209.99935 * 8 6 4 11 11 H 1.48496 * 109.47029 * 330.00230 * 8 6 4 12 12 S 1.65597 * 120.00444 * 113.75838 * 3 2 1 13 13 O 1.42103 * 106.40197 * 336.46445 * 12 3 2 14 14 O 1.42101 * 106.40468 * 203.54058 * 12 3 2 15 15 C 1.76202 * 107.21681 * 89.99932 * 12 3 2 16 16 C 1.38828 * 120.35093 * 90.00423 * 15 12 3 17 17 C 1.38389 * 118.48078 * 180.02562 * 16 15 12 18 18 C 1.38912 * 119.11430 * 359.97438 * 17 16 15 19 19 O 1.35670 * 119.68721 * 180.02562 * 18 17 16 20 20 C 1.42905 * 117.00396 * 179.97438 * 19 18 17 21 21 N 1.32256 * 120.63115 * 359.97438 * 18 17 16 22 22 C 1.31970 * 121.64458 * 0.04754 * 21 18 17 23 23 H 1.09002 * 109.46977 * 300.00341 * 1 2 3 24 24 H 1.08995 * 109.46935 * 60.00591 * 1 2 3 25 25 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46977 * 239.99659 * 2 1 3 27 27 H 1.09007 * 109.47298 * 119.99596 * 2 1 3 28 28 H 0.97002 * 119.99848 * 180.02562 * 7 6 4 29 29 H 1.07993 * 120.75898 * 359.97438 * 16 15 12 30 30 H 1.07999 * 120.43844 * 179.72517 * 17 16 15 31 31 H 1.08990 * 109.47025 * 300.00815 * 20 19 18 32 32 H 1.09002 * 109.46529 * 60.00161 * 20 19 18 33 33 H 1.08993 * 109.47134 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.58138 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7961 2.1859 -1.0855 5 1 1.6828 3.2518 -0.9532 6 6 1.7165 1.6318 -2.3557 7 7 2.2701 0.4628 -2.5995 8 14 0.8237 2.5450 -3.7189 9 1 1.7815 3.4264 -4.4339 10 1 0.2443 1.5662 -4.6735 11 1 -0.2642 3.3686 -3.1330 12 16 2.8391 1.9693 1.3125 13 8 2.4449 1.1736 2.4219 14 8 2.6917 3.3822 1.2780 15 6 4.5500 1.6410 1.0478 16 6 5.3494 2.5689 0.3942 17 6 6.6878 2.2711 0.2066 18 6 7.1832 1.0613 0.6763 19 8 8.4936 0.7576 0.4991 20 6 8.9421 -0.5013 1.0052 21 7 6.3900 0.2030 1.2954 22 6 5.1098 0.4587 1.4887 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.2148 0.0757 -3.4872 29 1 4.9361 3.5015 0.0395 30 1 7.3374 2.9682 -0.3017 31 1 8.7752 -0.5404 2.0815 32 1 8.3871 -1.3055 0.5221 33 1 10.0056 -0.6184 0.7974 34 1 4.4923 -0.2662 1.9981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279284678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:43 Heat of formation + Delta-G solvation = -89.132055 kcal Electronic energy + Delta-G solvation = -21219.837820 eV Core-core repulsion = 17858.936185 eV Total energy + Delta-G solvation = -3360.901635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63263 -38.94780 -37.89989 -37.75066 -36.35343 -33.63621 -33.60846 -31.89752 -30.94552 -28.32257 -26.71990 -24.85094 -24.19425 -23.26515 -20.31761 -19.60719 -19.12422 -18.41390 -18.19775 -17.87762 -17.11713 -16.63956 -16.10198 -15.69731 -15.37883 -15.18166 -14.73396 -14.62606 -14.44540 -14.11766 -13.94977 -13.69603 -13.06438 -12.86793 -12.72183 -12.66323 -12.60401 -12.55029 -12.35427 -12.12741 -11.98085 -11.80925 -11.52173 -11.14255 -11.09109 -10.79353 -9.88253 -9.67398 -8.31700 -5.97466 -0.29161 0.01542 0.11529 1.51576 1.56399 1.68182 1.95460 2.27955 2.45784 2.74402 2.94386 3.15651 3.29120 3.63693 3.92878 4.02921 4.22675 4.36407 4.40847 4.42563 4.59118 4.60711 4.71465 4.75553 4.80474 4.97378 5.04858 5.30257 5.32159 5.40714 5.66417 5.81655 6.02361 6.46161 6.57198 6.85791 7.32300 8.58017 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.006460 C = 0.005749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.968824 B = 4333.544527 C = 4869.402575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.104 3.896 3 N -0.806 5.806 4 C -0.265 4.265 5 H 0.104 0.896 6 C 0.014 3.986 7 N -0.842 5.842 8 Si 0.977 3.023 9 H -0.270 1.270 10 H -0.272 1.272 11 H -0.261 1.261 12 S 2.548 3.452 13 O -1.018 7.018 14 O -1.010 7.010 15 C -0.756 4.756 16 C 0.039 3.961 17 C -0.209 4.209 18 C 0.334 3.666 19 O -0.310 6.310 20 C 0.033 3.967 21 N -0.561 5.561 22 C 0.214 3.786 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.280 0.720 29 H 0.156 0.844 30 H 0.172 0.828 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.085 -2.207 -0.096 6.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 N -0.630 5.630 4 C -0.413 4.413 5 H 0.121 0.879 6 C -0.199 4.199 7 N -0.480 5.480 8 Si 0.800 3.200 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.186 1.186 12 S 2.650 3.350 13 O -1.008 7.008 14 O -1.000 7.000 15 C -0.838 4.838 16 C 0.013 3.987 17 C -0.230 4.230 18 C 0.156 3.844 19 O -0.217 6.217 20 C -0.062 4.062 21 N -0.285 5.285 22 C 0.057 3.943 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.189 0.811 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.555 -2.618 0.966 7.125 hybrid contribution 0.093 0.547 -0.956 1.106 sum 6.649 -2.071 0.009 6.964 Atomic orbital electron populations 1.21854 0.95278 1.01608 1.01263 1.21582 0.95404 0.82327 1.02907 1.53909 1.54005 1.20854 1.34242 1.19914 1.42506 0.93383 0.85535 0.87881 1.26373 0.96499 0.97090 0.99896 1.69971 1.36879 1.17781 1.23362 0.85158 0.79050 0.78446 0.77352 1.19579 1.19703 1.18553 1.10548 0.73448 0.73891 0.77092 1.93302 1.82408 1.70453 1.54662 1.93297 1.86268 1.32418 1.87998 1.32864 1.31339 1.04587 1.15047 1.21303 0.92082 0.97349 0.87982 1.21403 0.96690 0.97646 1.07265 1.20250 0.84880 0.90176 0.89134 1.86237 1.19434 1.40616 1.75419 1.23161 1.01453 0.81974 0.99590 1.67353 1.06904 1.33845 1.20424 1.22197 0.89395 0.93056 0.89633 0.93893 0.92927 0.90612 0.88763 0.91773 0.90924 0.82594 0.81059 0.92313 0.92658 0.84976 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.96 71.98 0.72 -4.55 16 2 C 0.10 4.39 5.84 86.38 0.50 4.90 16 3 N -0.81 -37.35 2.98 -343.44 -1.02 -38.37 16 4 C -0.27 -12.56 8.67 84.03 0.73 -11.83 16 5 H 0.10 4.96 7.34 -2.91 -0.02 4.94 16 6 C 0.01 0.62 4.63 84.86 0.39 1.01 16 7 N -0.84 -38.72 11.06 21.65 0.24 -38.48 16 8 Si 0.98 35.72 29.61 68.60 2.03 37.75 16 9 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 10 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 11 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 12 S 2.55 118.42 5.64 -56.49 -0.32 118.10 16 13 O -1.02 -49.26 15.94 -128.00 -2.04 -51.30 16 14 O -1.01 -51.17 16.21 -128.00 -2.08 -53.25 16 15 C -0.76 -32.03 5.99 22.36 0.13 -31.90 16 16 C 0.04 1.50 9.64 22.45 0.22 1.72 16 17 C -0.21 -7.14 10.04 22.47 0.23 -6.92 16 18 C 0.33 11.76 7.49 84.79 0.63 12.40 16 19 O -0.31 -9.20 10.48 -89.87 -0.94 -10.14 16 20 C 0.03 0.72 10.38 113.37 1.18 1.90 16 21 N -0.56 -21.04 9.22 -308.96 -2.85 -23.89 16 22 C 0.21 8.56 10.68 84.63 0.90 9.46 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.05 2.03 7.41 -2.39 -0.02 2.01 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.09 4.21 5.52 -2.39 -0.01 4.20 16 27 H 0.06 2.58 7.03 -2.38 -0.02 2.56 16 28 H 0.28 12.02 8.31 -92.71 -0.77 11.25 16 29 H 0.16 5.75 7.71 -2.91 -0.02 5.73 16 30 H 0.17 4.62 8.06 -2.91 -0.02 4.59 16 31 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 32 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.17 6.42 7.62 -2.91 -0.02 6.39 16 Total: -1.00 -59.91 305.41 -0.23 -60.14 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.12 Total: 23.25 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.63 Total: -23.81 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -3.63 Total: -100.75 kcal Atomic # 8 Polarization: -109.63 SS G_CDS: -5.06 Total: -114.69 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Atomic # 16 Polarization: 118.42 SS G_CDS: -0.32 Total: 118.10 kcal Total: -59.91 -0.23 -60.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279284678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.996 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds