Wall clock time and date at job start Tue Mar 31 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34776 * 119.99853 * 2 1 4 4 O 1.21287 * 120.00452 * 359.97438 * 3 2 1 5 5 C 1.50709 * 120.00034 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.64148 * 298.31359 * 5 3 2 7 7 C 1.55156 * 110.87197 * 175.06208 * 5 3 2 8 8 C 1.55123 * 101.48498 * 205.90029 * 7 5 3 9 9 N 1.47423 * 104.72654 * 37.29727 * 8 7 5 10 10 C 1.34777 * 125.65109 * 155.81318 * 9 8 7 11 11 O 1.21283 * 119.99750 * 179.69290 * 10 9 8 12 12 C 1.50702 * 119.99928 * 359.97383 * 10 9 8 13 13 S 1.80999 * 109.46903 * 179.72354 * 12 10 9 14 14 C 1.76200 * 99.99730 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00351 * 0.02562 * 14 13 12 16 16 C 1.38796 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31634 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00384 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46990 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47522 * 119.99735 * 18 16 14 21 21 H 1.48500 * 109.47073 * 240.00101 * 18 16 14 22 22 C 1.47025 * 108.69835 * 335.55436 * 9 8 7 23 23 H 1.09006 * 109.47335 * 60.00023 * 1 2 3 24 24 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47540 * 300.00020 * 1 2 3 26 26 H 0.96996 * 120.00467 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46842 * 181.68720 * 6 5 3 28 28 H 1.09002 * 109.46816 * 301.68461 * 6 5 3 29 29 H 1.08999 * 109.47447 * 61.68540 * 6 5 3 30 30 H 1.09005 * 111.00556 * 324.14164 * 7 5 3 31 31 H 1.09000 * 111.00136 * 87.99172 * 7 5 3 32 32 H 1.09004 * 110.49673 * 278.45187 * 8 7 5 33 33 H 1.09004 * 110.34018 * 156.06510 * 8 7 5 34 34 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 35 35 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 36 36 H 0.97002 * 120.00288 * 179.97438 * 17 16 14 37 37 H 1.09004 * 109.88256 * 120.70346 * 22 9 8 38 38 H 1.08998 * 109.87939 * 241.71109 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1847 0.4885 1.2614 7 6 4.1986 2.6116 -0.1243 8 6 5.5867 2.3565 -0.7682 9 7 5.3635 1.2464 -1.7122 10 6 6.1125 0.9777 -2.8000 11 8 5.8385 0.0304 -3.5060 12 6 7.2943 1.8506 -3.1355 13 16 8.0947 1.2317 -4.6363 14 6 9.4015 2.4035 -4.7915 15 1 9.5045 3.1967 -4.0659 16 6 10.2991 2.3064 -5.8457 17 7 10.1744 1.3387 -6.7293 18 14 11.6849 3.5482 -6.0098 19 1 11.6060 4.5280 -4.8968 20 1 12.9906 2.8427 -5.9572 21 1 11.5595 4.2613 -7.3063 22 6 4.1923 0.4772 -1.2670 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.9500 -0.8400 0.0004 27 1 5.2741 0.5257 1.2567 28 1 3.8073 1.0071 2.1427 29 1 3.8567 -0.5508 1.2831 30 1 3.5675 3.2166 -0.7753 31 1 4.3041 3.0757 0.8563 32 1 6.3128 2.0680 -0.0081 33 1 5.9264 3.2449 -1.3006 34 1 6.9553 2.8735 -3.2999 35 1 8.0058 1.8319 -2.3101 36 1 10.8015 1.2710 -7.4662 37 1 3.4306 0.4772 -2.0467 38 1 4.4869 -0.5466 -1.0368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281238853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:32 Heat of formation + Delta-G solvation = -73.687425 kcal Electronic energy + Delta-G solvation = -20376.655630 eV Core-core repulsion = 17152.256819 eV Total energy + Delta-G solvation = -3224.398811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89083 -39.19108 -37.20058 -34.97370 -33.08598 -32.43107 -29.82094 -29.49319 -27.28091 -26.49674 -25.46424 -23.71345 -22.12011 -19.90222 -19.42512 -17.89209 -17.29470 -16.42896 -16.32543 -16.04189 -15.42438 -15.02139 -14.80664 -14.42989 -14.20366 -13.94992 -13.75745 -13.33401 -12.84385 -12.76251 -12.63322 -12.63147 -12.49774 -12.29835 -11.86739 -11.72284 -11.31169 -11.07550 -11.04678 -11.01728 -10.76228 -10.11067 -9.80724 -9.49282 -9.43124 -9.07687 -8.56686 -8.23792 -6.50918 -6.22106 -3.92814 2.28234 2.76290 2.95342 3.03810 3.21638 3.26272 3.31318 3.59747 3.96300 4.19685 4.21605 4.42612 4.62869 4.89041 4.90903 4.97099 5.07072 5.13239 5.15938 5.26026 5.40036 5.44593 5.45603 5.50150 5.58165 5.60813 5.70652 5.75968 5.89704 5.96050 6.04408 6.13053 6.33550 7.09150 7.59176 7.61162 7.87011 8.35194 8.51407 9.23361 10.85393 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.003195 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.294020 B = 8760.801471 C = 9086.804256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.734 5.734 3 C 0.532 3.468 4 O -0.533 6.533 5 C -0.098 4.098 6 C -0.135 4.135 7 C -0.107 4.107 8 C 0.099 3.901 9 N -0.624 5.624 10 C 0.549 3.451 11 O -0.515 6.515 12 C -0.147 4.147 13 S -0.061 6.061 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.125 3.875 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.403 0.597 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.068 0.932 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 -1.718 18.220 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.385 5.385 3 C 0.317 3.683 4 O -0.408 6.408 5 C -0.101 4.101 6 C -0.192 4.192 7 C -0.146 4.146 8 C -0.024 4.024 9 N -0.362 5.362 10 C 0.338 3.662 11 O -0.389 6.389 12 C -0.297 4.297 13 S 0.165 5.835 14 C -0.682 4.682 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.001 3.999 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.237 0.763 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.790 -2.472 16.918 23.274 hybrid contribution 1.353 1.427 0.717 2.093 sum -14.437 -1.045 17.635 22.815 Atomic orbital electron populations 1.21560 0.79426 1.02363 1.02408 1.45815 1.07896 1.08816 1.76017 1.20244 0.89138 0.83640 0.75261 1.90712 1.70011 1.31297 1.48811 1.21884 0.91635 0.99231 0.97382 1.21818 1.02438 1.00069 0.94909 1.22794 0.95387 0.93844 1.02557 1.22428 0.97074 0.90521 0.92353 1.48456 1.30119 1.30858 1.26789 1.20067 0.82757 0.85098 0.78288 1.90711 1.69985 1.29543 1.48649 1.23510 0.97594 1.02020 1.06573 1.85403 1.32998 1.40423 1.24636 1.22896 1.14748 1.15644 1.14921 0.90848 1.24999 0.97700 0.96179 0.94743 1.70030 1.36451 1.30566 1.13243 0.86106 0.80759 0.80354 0.78216 1.19595 1.20569 1.20566 1.21789 0.88758 0.95424 0.93902 0.92087 0.90531 0.92190 0.76259 0.90644 0.91561 0.91786 0.89135 0.89226 0.90984 0.89772 0.89183 0.89175 0.92233 0.91338 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.84 0.64 1.19 16 2 N -0.73 -5.53 5.60 -67.08 -0.38 -5.90 16 3 C 0.53 5.56 6.38 -10.98 -0.07 5.49 16 4 O -0.53 -7.53 15.78 5.55 0.09 -7.44 16 5 C -0.10 -0.90 0.75 -153.82 -0.12 -1.02 16 6 C -0.13 -0.90 8.35 37.16 0.31 -0.59 16 7 C -0.11 -1.04 5.65 -24.47 -0.14 -1.18 16 8 C 0.10 1.07 6.38 -2.41 -0.02 1.06 16 9 N -0.62 -8.98 3.32 -170.38 -0.57 -9.54 16 10 C 0.55 10.61 7.87 -10.98 -0.09 10.52 16 11 O -0.51 -11.91 16.19 5.55 0.09 -11.82 16 12 C -0.15 -3.00 5.16 36.01 0.19 -2.82 16 13 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 14 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 15 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 16 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 18 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C 0.13 1.47 5.97 -3.06 -0.02 1.45 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.40 2.07 8.49 -40.82 -0.35 1.72 16 27 H 0.07 0.51 7.42 -51.93 -0.39 0.13 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.33 7.83 -51.93 -0.41 -0.08 16 30 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16 31 H 0.09 0.71 8.04 -51.93 -0.42 0.29 16 32 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 33 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16 34 H 0.09 1.72 7.86 -51.91 -0.41 1.32 16 35 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 38 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -36.65 332.57 -6.98 -43.63 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.61 Total: -2.18 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.89 Total: 1.19 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.21 Total: -40.88 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.18 Total: -19.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.65 -6.98 -43.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281238853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.059 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds