Wall clock time and date at job start Tue Mar 31 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35906 * 117.00684 * 2 1 4 4 C 1.38756 * 120.47412 * 0.02562 * 3 2 1 5 5 N 1.31807 * 120.68708 * 179.97438 * 4 3 2 6 6 C 1.31877 * 121.77583 * 359.71151 * 5 4 3 7 7 C 1.38204 * 120.89212 * 0.57899 * 6 5 4 8 8 S 1.76202 * 120.39181 * 179.70543 * 7 6 5 9 9 O 1.42101 * 106.40553 * 156.18223 * 8 7 6 10 10 O 1.42100 * 106.39896 * 23.26409 * 8 7 6 11 11 N 1.65593 * 107.21781 * 269.72523 * 8 7 6 12 12 C 1.46500 * 120.00261 * 64.99999 * 11 8 7 13 13 H 1.08999 * 109.47094 * 24.99626 * 12 11 8 14 14 C 1.53004 * 109.47128 * 264.99946 * 12 11 8 15 15 C 1.50695 * 109.47730 * 145.00023 * 12 11 8 16 16 H 1.08006 * 119.99720 * 35.00050 * 15 12 11 17 17 C 1.37876 * 120.00468 * 215.00648 * 15 12 11 18 18 N 1.31514 * 120.00248 * 184.91817 * 17 15 12 19 19 Si 1.86799 * 119.99903 * 4.90631 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83719 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.84013 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.84188 * 19 17 15 23 23 C 1.38584 * 119.22409 * 359.43302 * 7 6 5 24 24 H 1.09006 * 109.46749 * 59.99968 * 1 2 3 25 25 H 1.09000 * 109.47844 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47349 * 299.99968 * 1 2 3 27 27 H 1.08005 * 119.65037 * 359.95680 * 4 3 2 28 28 H 1.08009 * 119.55634 * 180.30925 * 6 5 4 29 29 H 0.97003 * 120.00458 * 245.00231 * 11 8 7 30 30 H 1.09002 * 109.47308 * 295.02301 * 14 12 11 31 31 H 1.08999 * 109.47453 * 175.01765 * 14 12 11 32 32 H 1.09006 * 109.47132 * 55.01836 * 14 12 11 33 33 H 0.97002 * 120.00267 * 179.97438 * 18 17 15 34 34 H 1.07992 * 120.81610 * 180.25564 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.3001 2.3809 0.0005 5 7 1.8943 3.5574 0.0010 6 6 3.2081 3.6719 0.0067 7 6 4.0180 2.5521 0.0004 8 16 5.7719 2.7205 0.0003 9 8 6.2909 1.5146 0.5442 10 8 6.0519 4.0026 0.5452 11 7 6.2597 2.7681 -1.5815 12 6 5.8557 3.8848 -2.4394 13 1 5.6472 4.7594 -1.8232 14 6 4.5976 3.4991 -3.2199 15 6 6.9676 4.2043 -3.4050 16 1 7.5827 3.4103 -3.8021 17 6 7.1998 5.5102 -3.7816 18 7 8.1051 5.7797 -4.6967 19 14 6.2282 6.8966 -2.9922 20 1 6.8793 7.2943 -1.7182 21 1 6.1899 8.0609 -3.9130 22 1 4.8431 6.4367 -2.7177 23 6 3.4345 1.2951 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2214 2.3268 0.0002 28 1 3.6572 4.6542 0.0120 29 1 6.8129 2.0565 -1.9401 30 1 4.8294 2.6807 -3.9015 31 1 4.2462 4.3588 -3.7906 32 1 3.8206 3.1831 -2.5237 33 1 8.2682 6.6984 -4.9619 34 1 4.0428 0.4028 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282000327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:00 Heat of formation + Delta-G solvation = -72.349780 kcal Electronic energy + Delta-G solvation = -21010.712426 eV Core-core repulsion = 17650.538525 eV Total energy + Delta-G solvation = -3360.173901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.83400 -38.36331 -36.89488 -35.68801 -35.47953 -32.79806 -32.28303 -30.78616 -29.13850 -27.87914 -25.39015 -24.07961 -23.45823 -20.87657 -19.51860 -18.57573 -17.75640 -17.37167 -16.89915 -16.41118 -16.23382 -16.08407 -15.48179 -14.73721 -14.37531 -13.93685 -13.62454 -13.37776 -13.05394 -12.88623 -12.57796 -12.28717 -12.08061 -11.91572 -11.82159 -11.73230 -11.65483 -11.34363 -11.10388 -10.78892 -10.62515 -10.28202 -9.86971 -9.67075 -9.38834 -8.81275 -8.74324 -8.59488 -6.26569 -4.28124 0.39358 0.80558 1.04011 2.82626 3.22286 3.29047 3.31671 3.36374 3.59028 4.08586 4.19830 4.28474 4.29911 4.60781 4.63794 4.76761 4.80489 4.90910 5.08244 5.11243 5.32541 5.62243 5.69868 5.91542 6.09568 6.18065 6.32833 6.48171 6.86450 7.00468 7.06095 7.38772 7.60326 7.81397 8.31432 8.76593 9.33037 10.84935 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.005747 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.679068 B = 4871.090610 C = 5250.653383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.052 3.948 4 C 0.064 3.936 5 N -0.460 5.460 6 C 0.164 3.836 7 C -0.685 4.685 8 S 2.681 3.319 9 O -0.972 6.972 10 O -0.953 6.953 11 N -1.087 6.087 12 C 0.234 3.766 13 H 0.050 0.950 14 C -0.158 4.158 15 C -0.514 4.514 16 H 0.083 0.917 17 C 0.080 3.920 18 N -0.883 5.883 19 Si 0.865 3.135 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.261 1.261 23 C -0.004 4.004 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.163 0.837 28 H 0.175 0.825 29 H 0.415 0.585 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.269 0.731 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -8.896 7.996 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.221 6.221 3 C 0.004 3.996 4 C -0.094 4.094 5 N -0.170 5.170 6 C 0.005 3.995 7 C -0.769 4.769 8 S 2.767 3.233 9 O -0.961 6.961 10 O -0.943 6.943 11 N -0.849 5.849 12 C 0.130 3.870 13 H 0.068 0.932 14 C -0.218 4.218 15 C -0.555 4.555 16 H 0.101 0.899 17 C -0.125 4.125 18 N -0.520 5.520 19 Si 0.691 3.309 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.186 1.186 23 C -0.031 4.031 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.180 0.820 28 H 0.192 0.808 29 H 0.250 0.750 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.716 -8.019 8.730 18.897 hybrid contribution -0.787 -0.210 -0.207 0.841 sum -15.503 -8.230 8.523 19.512 Atomic orbital electron populations 1.23151 0.77956 1.04561 1.01586 1.86105 1.21646 1.25525 1.88797 1.20009 0.93310 0.86028 1.00225 1.23221 1.00748 0.87428 0.98051 1.67685 1.11978 1.26096 1.11220 1.22524 0.88604 0.98143 0.90228 1.32349 1.30398 0.99221 1.14977 1.02553 0.72912 0.73759 0.74082 1.93539 1.77390 1.47293 1.77920 1.93591 1.82259 1.41121 1.77302 1.55823 1.64570 1.35052 1.29484 1.19045 0.94148 0.83969 0.89866 0.93221 1.22448 0.97270 1.01831 1.00220 1.20968 1.15472 0.94558 1.24463 0.89857 1.24991 0.94602 0.98575 0.94377 1.69870 1.32391 1.20382 1.29348 0.87034 0.81474 0.82109 0.80292 1.18902 1.20937 1.18566 1.20582 0.92121 0.97262 0.93168 0.92277 0.87692 0.92391 0.81979 0.80799 0.74970 0.92474 0.92348 0.95937 0.92093 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.36 10.51 -19.44 -0.20 -3.57 16 3 C 0.05 0.66 6.71 -39.07 -0.26 0.40 16 4 C 0.06 0.78 10.22 -17.37 -0.18 0.61 16 5 N -0.46 -6.88 10.36 -13.12 -0.14 -7.02 16 6 C 0.16 2.61 9.88 -17.54 -0.17 2.44 16 7 C -0.68 -10.82 4.95 -39.47 -0.20 -11.01 16 8 S 2.68 47.95 5.73 -107.50 -0.62 47.33 16 9 O -0.97 -18.12 17.36 -57.17 -0.99 -19.11 16 10 O -0.95 -19.71 16.63 -57.17 -0.95 -20.66 16 11 N -1.09 -20.44 5.46 -5.88 -0.03 -20.47 16 12 C 0.23 5.10 2.56 -69.08 -0.18 4.92 16 13 H 0.05 1.12 4.65 -51.93 -0.24 0.88 16 14 C -0.16 -3.06 9.50 37.16 0.35 -2.71 16 15 C -0.51 -13.32 9.11 -34.44 -0.31 -13.64 16 16 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 17 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.88 -25.44 13.96 55.43 0.77 -24.67 16 19 Si 0.87 20.49 26.99 -169.99 -4.59 15.90 16 20 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.26 -5.75 6.82 56.52 0.39 -5.37 16 23 C 0.00 -0.06 9.60 -39.13 -0.38 -0.43 16 24 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 27 H 0.16 1.40 6.32 -52.48 -0.33 1.07 16 28 H 0.18 2.70 7.62 -52.48 -0.40 2.30 16 29 H 0.41 7.08 8.83 -34.47 -0.30 6.78 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.38 6.19 -51.93 -0.32 0.06 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 34 H 0.16 2.03 7.71 -52.49 -0.40 1.62 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -32.45 303.31 -6.24 -38.70 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.64 Total: 5.22 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.43 Total: -16.21 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.61 Total: -52.16 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -2.15 Total: -43.34 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.59 Total: 15.90 kcal Atomic # 16 Polarization: 47.95 SS G_CDS: -0.62 Total: 47.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.45 -6.24 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282000327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds