Wall clock time and date at job start Tue Mar 31 2020 02:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35906 * 117.00684 * 2 1 4 4 C 1.38756 * 120.47412 * 0.02562 * 3 2 1 5 5 N 1.31807 * 120.68708 * 179.97438 * 4 3 2 6 6 C 1.31877 * 121.77583 * 359.71151 * 5 4 3 7 7 C 1.38204 * 120.89212 * 0.57899 * 6 5 4 8 8 S 1.76202 * 120.39181 * 179.70543 * 7 6 5 9 9 O 1.42101 * 106.40553 * 156.18223 * 8 7 6 10 10 O 1.42100 * 106.39896 * 23.26409 * 8 7 6 11 11 N 1.65593 * 107.21781 * 269.72523 * 8 7 6 12 12 C 1.46500 * 120.00261 * 64.99999 * 11 8 7 13 13 H 1.08999 * 109.47094 * 24.99626 * 12 11 8 14 14 C 1.53004 * 109.47128 * 264.99946 * 12 11 8 15 15 C 1.50695 * 109.47730 * 145.00023 * 12 11 8 16 16 H 1.08006 * 119.99720 * 35.00050 * 15 12 11 17 17 C 1.37876 * 120.00468 * 215.00648 * 15 12 11 18 18 N 1.31514 * 120.00248 * 184.91817 * 17 15 12 19 19 Si 1.86799 * 119.99903 * 4.90631 * 17 15 12 20 20 H 1.48496 * 109.46932 * 84.83719 * 19 17 15 21 21 H 1.48491 * 109.47212 * 204.84013 * 19 17 15 22 22 H 1.48507 * 109.46996 * 324.84188 * 19 17 15 23 23 C 1.38584 * 119.22409 * 359.43302 * 7 6 5 24 24 H 1.09006 * 109.46749 * 59.99968 * 1 2 3 25 25 H 1.09000 * 109.47844 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47349 * 299.99968 * 1 2 3 27 27 H 1.08005 * 119.65037 * 359.95680 * 4 3 2 28 28 H 1.08009 * 119.55634 * 180.30925 * 6 5 4 29 29 H 0.97003 * 120.00458 * 245.00231 * 11 8 7 30 30 H 1.09002 * 109.47308 * 295.02301 * 14 12 11 31 31 H 1.08999 * 109.47453 * 175.01765 * 14 12 11 32 32 H 1.09006 * 109.47132 * 55.01836 * 14 12 11 33 33 H 0.97002 * 120.00267 * 179.97438 * 18 17 15 34 34 H 1.07992 * 120.81610 * 180.25564 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.3001 2.3809 0.0005 5 7 1.8943 3.5574 0.0010 6 6 3.2081 3.6719 0.0067 7 6 4.0180 2.5521 0.0004 8 16 5.7719 2.7205 0.0003 9 8 6.2909 1.5146 0.5442 10 8 6.0519 4.0026 0.5452 11 7 6.2597 2.7681 -1.5815 12 6 5.8557 3.8848 -2.4394 13 1 5.6472 4.7594 -1.8232 14 6 4.5976 3.4991 -3.2199 15 6 6.9676 4.2043 -3.4050 16 1 7.5827 3.4103 -3.8021 17 6 7.1998 5.5102 -3.7816 18 7 8.1051 5.7797 -4.6967 19 14 6.2282 6.8966 -2.9922 20 1 6.8793 7.2943 -1.7182 21 1 6.1899 8.0609 -3.9130 22 1 4.8431 6.4367 -2.7177 23 6 3.4345 1.2951 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2214 2.3268 0.0002 28 1 3.6572 4.6542 0.0120 29 1 6.8129 2.0565 -1.9401 30 1 4.8294 2.6807 -3.9015 31 1 4.2462 4.3588 -3.7906 32 1 3.8206 3.1831 -2.5237 33 1 8.2682 6.6984 -4.9619 34 1 4.0428 0.4028 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282000327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:00 Heat of formation + Delta-G solvation = -99.112659 kcal Electronic energy + Delta-G solvation = -21011.872952 eV Core-core repulsion = 17650.538525 eV Total energy + Delta-G solvation = -3361.334427 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81794 -39.25770 -38.41658 -37.38105 -37.00992 -34.27611 -33.87293 -31.79666 -30.79056 -28.49296 -27.27939 -25.13082 -24.50588 -22.63088 -20.84555 -19.89564 -19.29818 -18.40992 -18.08263 -17.87470 -17.56908 -17.02678 -16.92272 -16.25580 -15.44335 -15.24541 -14.91582 -14.58460 -14.53293 -14.40516 -14.04844 -13.71454 -13.48671 -13.28451 -13.19634 -12.99044 -12.88352 -12.61241 -12.53256 -12.50823 -12.28950 -11.80064 -11.45599 -11.21620 -10.81625 -10.72822 -10.23902 -9.72369 -8.33051 -6.38405 -0.79489 -0.53429 -0.02375 1.35417 1.43090 1.45797 1.94081 2.08777 2.32646 2.35820 2.69411 3.05733 3.16364 3.31404 3.42684 3.71141 3.78817 4.10018 4.22674 4.33024 4.37925 4.55135 4.60959 4.64692 4.74357 4.75437 4.85789 5.07539 5.33047 5.48072 5.51022 6.05483 6.25417 6.30072 6.53986 6.68926 7.27099 8.82263 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.005747 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.679068 B = 4871.090610 C = 5250.653383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.318 6.318 3 C 0.062 3.938 4 C 0.072 3.928 5 N -0.472 5.472 6 C 0.147 3.853 7 C -0.688 4.688 8 S 2.704 3.296 9 O -0.980 6.980 10 O -0.984 6.984 11 N -1.092 6.092 12 C 0.238 3.762 13 H 0.046 0.954 14 C -0.152 4.152 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.027 3.973 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.233 1.233 23 C -0.017 4.017 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.074 0.926 27 H 0.203 0.797 28 H 0.171 0.829 29 H 0.421 0.579 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.269 0.731 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.086 -9.925 9.099 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.230 6.230 3 C 0.014 3.986 4 C -0.086 4.086 5 N -0.181 5.181 6 C -0.011 4.011 7 C -0.777 4.777 8 S 2.793 3.207 9 O -0.970 6.970 10 O -0.974 6.974 11 N -0.854 5.854 12 C 0.132 3.868 13 H 0.064 0.936 14 C -0.212 4.212 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.173 4.173 18 N -0.572 5.572 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.155 1.155 23 C -0.044 4.044 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.092 0.908 27 H 0.220 0.780 28 H 0.188 0.812 29 H 0.258 0.742 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.051 -9.061 9.816 22.457 hybrid contribution 0.096 -0.133 -0.459 0.488 sum -17.955 -9.195 9.357 22.237 Atomic orbital electron populations 1.23571 0.75336 1.06647 1.03024 1.86120 1.24279 1.24437 1.88187 1.20004 0.92814 0.87023 0.98802 1.23864 1.02537 0.86419 0.95808 1.67740 1.11267 1.27402 1.11710 1.22547 0.89319 0.98025 0.91213 1.31744 1.28086 1.00291 1.17531 1.01441 0.73578 0.72776 0.72902 1.93526 1.78432 1.47387 1.77633 1.93552 1.83572 1.42629 1.77651 1.55484 1.65594 1.34638 1.29668 1.18880 0.93687 0.84815 0.89424 0.93633 1.22324 0.96560 1.01903 1.00404 1.21222 1.15857 0.93722 1.25023 0.92811 1.25715 0.95686 1.01020 0.94875 1.69991 1.34871 1.20843 1.31524 0.86303 0.81755 0.79636 0.79069 1.19542 1.20416 1.15547 1.20764 0.93442 0.96852 0.93343 0.90907 0.85540 0.90756 0.78035 0.81177 0.74240 0.92099 0.92625 0.93420 0.92133 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.70 10.51 -92.49 -0.97 -6.67 16 3 C 0.06 1.37 6.71 22.60 0.15 1.52 16 4 C 0.07 1.48 10.22 84.82 0.87 2.35 16 5 N -0.47 -12.65 10.36 -195.43 -2.02 -14.67 16 6 C 0.15 4.41 9.88 84.68 0.84 5.24 16 7 C -0.69 -20.51 4.95 22.34 0.11 -20.40 16 8 S 2.70 94.82 5.73 -56.49 -0.32 94.49 16 9 O -0.98 -35.73 17.36 -128.00 -2.22 -37.95 16 10 O -0.98 -40.48 16.63 -128.00 -2.13 -42.61 16 11 N -1.09 -40.72 5.46 -172.52 -0.94 -41.66 16 12 C 0.24 10.22 2.56 44.24 0.11 10.33 16 13 H 0.05 2.01 4.65 -2.39 -0.01 2.00 16 14 C -0.15 -5.65 9.50 71.98 0.68 -4.97 16 15 C -0.52 -27.40 9.11 25.60 0.23 -27.17 16 16 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 17 C 0.03 1.51 5.47 84.65 0.46 1.98 16 18 N -0.93 -55.52 13.96 21.45 0.30 -55.22 16 19 Si 0.91 42.00 26.99 68.60 1.85 43.85 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 H -0.23 -9.57 6.82 99.48 0.68 -8.89 16 23 C -0.02 -0.44 9.60 22.56 0.22 -0.22 16 24 H 0.07 0.43 7.68 -2.38 -0.02 0.41 16 25 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.07 0.39 7.68 -2.39 -0.02 0.38 16 27 H 0.20 2.38 6.32 -2.91 -0.02 2.36 16 28 H 0.17 5.09 7.62 -2.91 -0.02 5.06 16 29 H 0.42 14.44 8.83 -96.74 -0.85 13.59 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 1.52 6.19 -2.38 -0.01 1.50 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.17 3.93 7.71 -2.91 -0.02 3.90 16 Total: -1.00 -70.58 303.31 -1.41 -71.99 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.26 Total: 18.60 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.79 Total: -30.16 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -2.67 Total: -111.56 kcal Atomic # 8 Polarization: -81.90 SS G_CDS: -5.32 Total: -87.23 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.85 Total: 43.85 kcal Atomic # 16 Polarization: 94.82 SS G_CDS: -0.32 Total: 94.49 kcal Total: -70.58 -1.41 -71.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282000327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.119 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds