Wall clock time and date at job start Tue Mar 31 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00048 * 2 1 4 4 N 1.46494 * 109.47211 * 124.99905 * 3 2 1 5 5 C 1.46504 * 119.99862 * 274.99416 * 4 3 2 6 6 C 1.50696 * 109.47428 * 275.00122 * 5 4 3 7 7 H 1.08005 * 119.99902 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00319 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99771 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00319 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47121 * 60.00232 * 10 8 6 12 12 H 1.48506 * 109.47093 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47158 * 300.00083 * 10 8 6 14 14 S 1.65599 * 120.00088 * 95.00039 * 4 3 2 15 15 O 1.42098 * 104.27702 * 333.92725 * 14 4 3 16 16 O 1.42101 * 104.27540 * 206.06853 * 14 4 3 17 17 C 1.81403 * 104.45088 * 89.99823 * 14 4 3 18 18 C 1.50702 * 109.46815 * 180.02562 * 17 14 4 19 19 C 1.41379 * 126.80093 * 269.70536 * 18 17 14 20 20 C 1.35446 * 103.98652 * 180.26598 * 19 18 17 21 21 O 1.34044 * 106.44743 * 0.02562 * 20 19 18 22 22 N 1.20918 * 111.56370 * 359.97438 * 21 20 19 23 23 H 1.08000 * 120.00084 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.00389 * 180.02562 * 1 2 3 25 25 H 1.07991 * 119.99565 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47092 * 4.99497 * 3 2 1 27 27 H 1.09003 * 109.46782 * 244.99744 * 3 2 1 28 28 H 1.08999 * 109.47268 * 35.00752 * 5 4 3 29 29 H 1.09003 * 109.47002 * 154.99792 * 5 4 3 30 30 H 0.96998 * 119.99640 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.46823 * 60.00122 * 17 14 4 32 32 H 1.08995 * 109.47153 * 299.99802 * 17 14 4 33 33 H 1.08001 * 128.00721 * 0.25149 * 19 18 17 34 34 H 1.08004 * 126.77907 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5284 1.7622 2.4522 6 6 2.5991 3.2647 2.5448 7 1 2.9555 3.8414 1.7040 8 6 2.2089 3.9032 3.7028 9 7 1.7754 3.2009 4.7269 10 14 2.2959 5.7656 3.8174 11 1 1.4338 6.3669 2.7684 12 1 1.8243 6.2018 5.1563 13 1 3.6992 6.2088 3.6188 14 16 4.5712 0.8759 0.9173 15 8 4.5315 -0.0150 -0.1890 16 8 4.9847 0.4307 2.2019 17 6 5.4290 2.4100 0.4687 18 6 6.8910 2.1210 0.2448 19 6 7.9214 2.1679 1.2117 20 6 9.0367 1.8372 0.5179 21 8 8.6474 1.6230 -0.7468 22 7 7.4563 1.7847 -0.8786 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 1.4983 1.4372 2.5982 29 1 3.1612 1.3205 3.2221 30 1 1.5012 3.6501 5.5417 31 1 5.3210 3.1357 1.2748 32 1 4.9950 2.8151 -0.4454 33 1 7.8385 2.4112 2.2606 34 1 10.0415 1.7619 0.9066 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292502419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:33 Heat of formation + Delta-G solvation = -6.372775 kcal Electronic energy + Delta-G solvation = -20914.545252 eV Core-core repulsion = 17557.232329 eV Total energy + Delta-G solvation = -3357.312924 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.13399 -38.31144 -37.96762 -37.05374 -36.05431 -35.00771 -33.56641 -32.86351 -30.31958 -29.35080 -26.56213 -24.38980 -24.16174 -22.48848 -21.02380 -19.91789 -19.06698 -18.87414 -18.52841 -18.29654 -17.51089 -17.33109 -16.52488 -16.09656 -15.92801 -15.26795 -14.78980 -14.60042 -14.42919 -14.21174 -13.81536 -13.74784 -13.44819 -13.25158 -13.04957 -12.95852 -12.81702 -12.50800 -12.45400 -12.32605 -12.29647 -11.91232 -11.69964 -11.04375 -10.70719 -10.57199 -10.32903 -9.80308 -8.16968 -6.32701 -0.89771 0.50068 1.09154 1.28946 1.45818 1.46515 1.54326 1.81430 2.30316 2.42343 2.64788 2.90564 3.09050 3.14768 3.47562 3.86960 3.97340 4.04323 4.14153 4.25240 4.38076 4.52144 4.71058 4.75481 4.92382 4.99948 5.06914 5.31672 5.43572 5.68608 5.75087 5.78731 5.98092 6.07985 6.80115 7.13607 7.38570 8.91065 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.007038 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.091308 B = 3977.466578 C = 5451.340534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.189 4.189 3 C 0.148 3.852 4 N -0.982 5.982 5 C 0.258 3.742 6 C -0.555 4.555 7 H 0.078 0.922 8 C 0.014 3.986 9 N -0.926 5.926 10 Si 0.958 3.042 11 H -0.266 1.266 12 H -0.288 1.288 13 H -0.264 1.264 14 S 2.617 3.383 15 O -0.979 6.979 16 O -0.983 6.983 17 C -0.539 4.539 18 C -0.017 4.017 19 C -0.246 4.246 20 C -0.027 4.027 21 O 0.113 5.887 22 N -0.379 5.379 23 H 0.107 0.893 24 H 0.113 0.887 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.266 0.734 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.194 0.806 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.515 0.139 -8.534 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.209 4.209 3 C 0.023 3.977 4 N -0.819 5.819 5 C 0.135 3.865 6 C -0.594 4.594 7 H 0.096 0.904 8 C -0.186 4.186 9 N -0.565 5.565 10 Si 0.783 3.217 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.189 1.189 14 S 2.711 3.289 15 O -0.970 6.970 16 O -0.974 6.974 17 C -0.668 4.668 18 C -0.175 4.175 19 C -0.269 4.269 20 C -0.108 4.108 21 O 0.041 5.959 22 N -0.081 5.081 23 H 0.125 0.875 24 H 0.132 0.868 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.211 0.789 34 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 9.277 -0.905 -9.497 13.307 hybrid contribution -0.265 1.615 1.284 2.080 sum 9.012 0.709 -8.212 12.213 Atomic orbital electron populations 1.24030 0.95135 1.03005 0.98381 1.23388 0.97098 0.98704 1.01742 1.20472 0.93244 0.96356 0.87661 1.57295 1.24561 1.82852 1.17186 1.18808 0.95543 0.94316 0.77834 1.21901 1.44771 0.92475 1.00237 0.90371 1.25818 0.94479 1.03133 0.95167 1.70070 1.43884 1.37771 1.04786 0.85605 0.79153 0.79621 0.77335 1.19101 1.21359 1.18892 1.04652 0.74073 0.76955 0.73258 1.93519 1.86337 1.61470 1.55637 1.93516 1.82556 1.80054 1.41245 1.29059 0.98834 1.24004 1.14907 1.22783 0.97006 1.06241 0.91439 1.23282 0.91310 1.08773 1.03510 1.27072 1.03273 0.98610 0.81811 1.84789 1.16907 1.63723 1.30449 1.73908 0.92233 1.18391 1.23535 0.87498 0.86837 0.88374 0.88922 0.88757 0.95955 0.95812 0.92454 0.81385 0.82042 0.78875 0.70427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 14.32 67.78 0.97 -3.78 16 2 C -0.19 -6.34 9.84 25.64 0.25 -6.08 16 3 C 0.15 5.10 5.69 85.63 0.49 5.59 16 4 N -0.98 -40.27 2.68 -523.92 -1.41 -41.67 16 5 C 0.26 12.83 5.41 85.63 0.46 13.30 16 6 C -0.55 -27.85 9.38 25.60 0.24 -27.61 16 7 H 0.08 3.57 7.81 -2.91 -0.02 3.55 16 8 C 0.01 0.74 5.46 84.65 0.46 1.20 16 9 N -0.93 -52.47 13.29 21.45 0.28 -52.18 16 10 Si 0.96 40.35 29.54 68.60 2.03 42.37 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 12 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 14 S 2.62 104.39 5.35 -56.49 -0.30 104.09 16 15 O -0.98 -41.13 16.99 -127.65 -2.17 -43.30 16 16 O -0.98 -45.97 16.53 -127.65 -2.11 -48.08 16 17 C -0.54 -17.43 6.77 71.24 0.48 -16.95 16 18 C -0.02 -0.53 6.59 43.58 0.29 -0.24 16 19 C -0.25 -6.02 11.12 22.40 0.25 -5.77 16 20 C -0.03 -0.46 12.30 67.17 0.83 0.36 16 21 O 0.11 2.72 11.20 71.60 0.80 3.52 16 22 N -0.38 -11.87 12.07 -49.55 -0.60 -12.46 16 23 H 0.11 2.83 7.84 -2.91 -0.02 2.81 16 24 H 0.11 2.72 8.06 -2.91 -0.02 2.70 16 25 H 0.10 3.44 8.06 -2.92 -0.02 3.41 16 26 H 0.09 3.07 7.76 -2.39 -0.02 3.05 16 27 H 0.09 2.82 7.61 -2.39 -0.02 2.80 16 28 H 0.02 1.19 8.11 -2.39 -0.02 1.17 16 29 H 0.02 1.33 6.82 -2.39 -0.02 1.31 16 30 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.17 5.24 8.14 -2.39 -0.02 5.22 16 32 H 0.16 4.49 8.14 -2.39 -0.02 4.47 16 33 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.28 1.05 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -72.30 318.62 2.35 -69.95 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.10 Total: 17.74 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 4.72 Total: -39.98 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -1.72 Total: -106.32 kcal Atomic # 8 Polarization: -84.38 SS G_CDS: -3.48 Total: -87.85 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 104.39 SS G_CDS: -0.30 Total: 104.09 kcal Total: -72.30 2.35 -69.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292502419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.579 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds