Wall clock time and date at job start Tue Mar 31 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47097 * 2 1 4 4 C 1.34780 * 120.00199 * 270.00010 * 3 2 1 5 5 O 1.21281 * 120.00590 * 180.02562 * 4 3 2 6 6 C 1.50712 * 119.99530 * 359.97438 * 4 3 2 7 7 S 1.80994 * 109.46973 * 179.97438 * 6 4 3 8 8 C 1.76196 * 100.00173 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99790 * 0.02562 * 8 7 6 10 10 C 1.38801 * 120.00598 * 180.02562 * 8 7 6 11 11 N 1.31628 * 120.00219 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 119.99391 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47028 * 90.00245 * 12 10 8 14 14 H 1.48504 * 109.46870 * 209.99535 * 12 10 8 15 15 H 1.48498 * 109.47535 * 329.99922 * 12 10 8 16 16 C 1.46503 * 120.00512 * 89.99949 * 3 2 1 17 17 H 1.09001 * 110.53391 * 358.60537 * 16 3 2 18 18 C 1.54226 * 110.60413 * 235.58944 * 16 3 2 19 19 C 1.51315 * 103.55557 * 241.47813 * 18 16 3 20 20 O 1.21223 * 125.39579 * 180.02562 * 19 18 16 21 21 N 1.33877 * 109.20497 * 359.75702 * 19 18 16 22 22 C 1.33872 * 114.47412 * 0.44059 * 21 19 18 23 23 O 1.21233 * 125.39808 * 179.82782 * 22 21 19 24 24 H 1.08997 * 109.47117 * 300.00459 * 1 2 3 25 25 H 1.08998 * 109.46978 * 60.00361 * 1 2 3 26 26 H 1.09002 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47494 * 239.99903 * 2 1 3 28 28 H 1.08998 * 109.46978 * 119.99639 * 2 1 3 29 29 H 1.08990 * 109.47070 * 300.00410 * 6 4 3 30 30 H 1.09002 * 109.46639 * 60.00267 * 6 4 3 31 31 H 0.96993 * 119.99964 * 180.02562 * 11 10 8 32 32 H 1.09001 * 110.61135 * 0.02562 * 18 16 3 33 33 H 1.09005 * 110.60720 * 122.80536 * 18 16 3 34 34 H 0.97003 * 122.76342 * 180.23666 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6476 3.1599 -1.1673 6 6 1.9923 1.3059 -2.4724 7 16 2.3835 2.4150 -3.8481 8 6 2.0102 1.3590 -5.2082 9 1 1.6552 0.3546 -5.0305 10 6 2.1723 1.8178 -6.5082 11 7 1.8930 1.0290 -7.5242 12 14 2.7870 3.5548 -6.8155 13 1 4.2698 3.5479 -6.8972 14 1 2.2233 4.0605 -8.0929 15 1 2.3568 4.4367 -5.7009 16 6 2.2625 2.0719 1.2687 17 1 2.0082 1.4273 2.1101 18 6 1.4656 3.3909 1.3307 19 6 2.5403 4.4493 1.4510 20 8 2.3445 5.6430 1.5291 21 7 3.7413 3.8580 1.4632 22 6 3.7037 2.5237 1.3603 23 8 4.6708 1.7928 1.3479 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6227 0.4187 -2.5298 30 1 0.9444 1.0114 -2.5302 31 1 2.0067 1.3496 -8.4326 32 1 0.8871 3.5330 0.4179 33 1 0.8120 3.4036 2.2030 34 1 4.5707 4.3555 1.5374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299560758.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:40 Heat of formation + Delta-G solvation = -93.757389 kcal Electronic energy + Delta-G solvation = -20817.073187 eV Core-core repulsion = 17455.970983 eV Total energy + Delta-G solvation = -3361.102205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13512 -39.56777 -38.60893 -36.24587 -35.68388 -32.48749 -32.44017 -30.19967 -29.06006 -26.00023 -25.61750 -23.59379 -22.50019 -21.52436 -19.32612 -18.07602 -17.76669 -17.22174 -17.04383 -16.14064 -15.71601 -15.48123 -15.01214 -14.86547 -14.26175 -14.07619 -13.99114 -13.89727 -13.71483 -13.51629 -12.85830 -12.72557 -12.38614 -12.25307 -11.86855 -11.34406 -11.29167 -11.11294 -11.04039 -10.68705 -10.39158 -10.25895 -9.91641 -9.72676 -9.05713 -8.99180 -8.56696 -6.98851 -6.33576 -4.06319 1.30351 2.25900 2.51951 2.70797 2.82168 3.07111 3.29939 3.46662 3.50541 3.88848 3.95636 4.09975 4.28386 4.44581 4.60148 4.73885 4.94606 5.02750 5.05749 5.12638 5.20773 5.37750 5.52970 5.57694 5.68994 5.84213 5.84990 6.03713 6.19677 6.49619 7.03536 7.15034 7.72159 7.89319 8.09901 8.36558 9.12504 10.75554 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.005214 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.613514 B = 5368.473342 C = 6090.297106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.532 3.468 5 O -0.511 6.511 6 C -0.120 4.120 7 S -0.141 6.141 8 C -0.522 4.522 9 H 0.089 0.911 10 C 0.097 3.903 11 N -0.879 5.879 12 Si 0.855 3.145 13 H -0.267 1.267 14 H -0.273 1.273 15 H -0.236 1.236 16 C 0.119 3.881 17 H 0.140 0.860 18 C -0.165 4.165 19 C 0.549 3.451 20 O -0.486 6.486 21 N -0.669 5.669 22 C 0.528 3.472 23 O -0.476 6.476 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.271 0.729 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -1.697 20.811 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.340 5.340 4 C 0.321 3.679 5 O -0.384 6.384 6 C -0.270 4.270 7 S 0.085 5.915 8 C -0.669 4.669 9 H 0.107 0.893 10 C -0.112 4.112 11 N -0.515 5.515 12 Si 0.680 3.320 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.160 1.160 16 C 0.011 3.989 17 H 0.158 0.842 18 C -0.206 4.206 19 C 0.337 3.663 20 O -0.358 6.358 21 N -0.334 5.334 22 C 0.313 3.687 23 O -0.346 6.346 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.106 0.106 20.609 20.717 hybrid contribution 0.216 -0.569 -0.497 0.786 sum -1.891 -0.463 20.112 20.206 Atomic orbital electron populations 1.22251 0.95252 1.02798 1.02938 1.21734 0.94785 0.80923 1.04303 1.47959 1.67666 1.15056 1.03346 1.20555 0.76042 0.86591 0.84724 1.90728 1.43523 1.17434 1.86736 1.23330 1.05715 1.03453 0.94521 1.84849 1.88258 1.20871 0.97482 1.22277 1.51946 1.01916 0.90802 0.89290 1.24692 0.93709 0.97880 0.94878 1.69927 1.46409 1.36234 0.98918 0.86759 0.80311 0.85024 0.79894 1.19217 1.19852 1.15971 1.21641 0.91601 0.95546 0.90106 0.84198 1.22870 0.98356 0.91772 1.07600 1.20432 0.84296 0.89029 0.72512 1.90794 1.84075 1.14981 1.45904 1.44553 1.11885 1.10100 1.66887 1.20998 0.92408 0.81832 0.73466 1.90796 1.41008 1.57764 1.45013 0.92232 0.91681 0.91053 0.89157 0.89830 0.88221 0.88033 0.91874 0.85311 0.85862 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.10 0.85 5.91 -4.04 -0.02 0.83 16 3 N -0.60 -6.80 2.49 -166.35 -0.41 -7.21 16 4 C 0.53 8.60 6.82 -10.98 -0.07 8.53 16 5 O -0.51 -9.81 12.77 5.56 0.07 -9.74 16 6 C -0.12 -2.17 4.71 36.01 0.17 -2.00 16 7 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 8 C -0.52 -14.66 10.04 30.94 0.31 -14.34 16 9 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 10 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 11 N -0.88 -26.12 13.97 55.49 0.78 -25.35 16 12 Si 0.86 21.60 27.74 -169.99 -4.71 16.89 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 16 C 0.12 1.10 3.59 -68.14 -0.24 0.86 16 17 H 0.14 0.70 7.87 -51.93 -0.41 0.29 16 18 C -0.17 -1.52 6.03 -26.94 -0.16 -1.68 16 19 C 0.55 6.86 7.69 -11.09 -0.09 6.77 16 20 O -0.49 -7.64 18.02 5.61 0.10 -7.54 16 21 N -0.67 -7.90 5.30 -11.40 -0.06 -7.96 16 22 C 0.53 6.53 6.91 -11.09 -0.08 6.45 16 23 O -0.48 -7.31 18.02 5.60 0.10 -7.21 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.58 7.22 -51.93 -0.38 0.20 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.81 6.44 -51.93 -0.33 0.48 16 28 H 0.08 0.49 7.96 -51.93 -0.41 0.07 16 29 H 0.10 1.72 7.40 -51.92 -0.38 1.33 16 30 H 0.10 1.67 7.19 -51.91 -0.37 1.30 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.13 1.44 6.94 -51.93 -0.36 1.08 16 33 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.41 4.40 8.96 -40.82 -0.37 4.03 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -36.27 306.00 -5.29 -41.56 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.86 Total: 0.13 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 0.10 Total: 7.28 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.30 Total: -40.52 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.27 Total: -24.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.27 -5.29 -41.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299560758.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.201 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds