Wall clock time and date at job start Tue Mar 31 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47060 * 2 1 4 4 C 1.46501 * 119.99901 * 274.81295 * 3 2 1 5 5 C 1.52995 * 109.47051 * 275.12970 * 4 3 2 6 6 C 1.34775 * 119.99977 * 94.81363 * 3 2 1 7 7 O 1.21279 * 120.00214 * 2.71387 * 6 3 2 8 8 C 1.50701 * 120.00036 * 182.71379 * 6 3 2 9 9 H 1.09002 * 108.70319 * 309.56344 * 8 6 3 10 10 C 1.54560 * 108.62754 * 67.74786 * 8 6 3 11 11 S 1.84214 * 101.32453 * 143.97559 * 10 8 6 12 12 C 1.84333 * 93.83048 * 327.58766 * 11 10 8 13 13 N 1.45501 * 108.75664 * 191.31180 * 8 6 3 14 14 C 1.34778 * 122.42902 * 60.26572 * 13 8 6 15 15 O 1.21682 * 120.00039 * 0.02562 * 14 13 8 16 16 C 1.46373 * 119.99930 * 180.02562 * 14 13 8 17 17 H 1.07998 * 120.00244 * 5.41038 * 16 14 13 18 18 C 1.40047 * 119.99957 * 185.40571 * 16 14 13 19 19 N 1.30663 * 120.00261 * 5.30968 * 18 16 14 20 20 Si 1.86802 * 120.00057 * 185.30920 * 18 16 14 21 21 H 1.48508 * 109.47075 * 265.00536 * 20 18 16 22 22 H 1.48498 * 109.47224 * 25.00182 * 20 18 16 23 23 H 1.48497 * 109.47263 * 145.00397 * 20 18 16 24 24 H 1.09004 * 109.47650 * 60.00005 * 1 2 3 25 25 H 1.08998 * 109.47612 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47225 * 299.99786 * 1 2 3 27 27 H 1.08996 * 109.47201 * 240.00257 * 2 1 3 28 28 H 1.08995 * 109.47411 * 119.99994 * 2 1 3 29 29 H 1.09000 * 109.47074 * 35.13523 * 4 3 2 30 30 H 1.09000 * 109.46852 * 155.13649 * 4 3 2 31 31 H 1.09003 * 109.46950 * 60.00123 * 5 4 3 32 32 H 1.09000 * 109.47295 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47632 * 300.00211 * 5 4 3 34 34 H 1.08991 * 111.05336 * 261.98840 * 10 8 6 35 35 H 1.08998 * 111.05198 * 25.97133 * 10 8 6 36 36 H 1.09002 * 110.89719 * 275.43957 * 12 11 10 37 37 H 1.09001 * 110.76943 * 151.92725 * 12 11 10 38 38 H 0.97006 * 120.00109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1620 2.1073 -1.2643 5 6 3.5195 1.7794 -1.8892 6 6 2.3352 1.9839 1.1631 7 8 2.2632 1.3673 2.2049 8 6 2.7791 3.4240 1.1690 9 1 3.5717 3.5486 0.4311 10 6 1.5802 4.3119 0.7651 11 16 1.8532 5.7929 1.8261 12 6 2.6020 4.8220 3.2025 13 7 3.3108 3.7443 2.4850 14 6 4.3702 3.0997 3.0129 15 8 4.9187 2.2140 2.3841 16 6 4.8609 3.4651 4.3427 17 1 4.3229 4.1889 4.9368 18 6 6.0281 2.8759 4.8446 19 7 6.7356 2.0797 4.0878 20 14 6.5735 3.2284 6.5961 21 1 7.5590 4.3394 6.5936 22 1 5.3951 3.6139 7.4134 23 1 7.1999 2.0122 7.1737 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3662 1.8094 -1.9469 30 1 2.0978 3.1792 -1.0770 31 1 3.5838 0.7075 -2.0764 32 1 3.6267 2.3199 -2.8296 33 1 4.3153 2.0773 -1.2065 34 1 1.6254 4.5737 -0.2919 35 1 0.6346 3.8264 1.0065 36 1 1.8302 4.4108 3.8530 37 1 3.3025 5.4340 3.7707 38 1 7.5442 1.6719 4.4354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330880549.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:08 Heat of formation + Delta-G solvation = -78.144599 kcal Electronic energy + Delta-G solvation = -21934.296288 eV Core-core repulsion = 18709.704199 eV Total energy + Delta-G solvation = -3224.592089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52518 -39.35723 -37.17504 -36.60553 -34.66088 -33.43110 -32.03621 -30.30449 -28.40884 -27.96570 -25.44916 -24.59046 -23.61208 -21.63717 -19.87650 -18.75206 -18.62307 -18.11807 -17.42655 -17.10386 -16.47158 -16.05263 -15.86880 -15.32179 -15.07187 -14.82895 -14.56351 -14.42536 -14.27411 -13.91172 -13.65674 -13.43905 -13.34826 -13.17457 -12.97860 -12.86245 -12.74799 -12.56528 -12.45435 -12.06951 -11.94259 -11.88361 -11.85652 -10.95713 -10.73952 -9.92359 -9.69127 -9.36772 -8.89058 -8.36154 -6.89988 0.64717 0.93025 1.35991 1.38195 1.53652 1.62232 1.90611 2.19250 2.44859 2.52834 3.27067 3.42830 3.65145 3.78101 4.01756 4.12952 4.20538 4.25446 4.28044 4.41285 4.42839 4.49191 4.50544 4.59975 4.73050 4.89527 4.94720 5.02690 5.25433 5.26954 5.32349 5.37399 5.68020 5.89662 6.12962 6.40104 6.81311 7.18188 7.25501 8.37993 8.60558 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.006325 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.063245 B = 4425.872880 C = 5247.676519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.105 3.895 3 N -0.612 5.612 4 C 0.094 3.906 5 C -0.171 4.171 6 C 0.506 3.494 7 O -0.569 6.569 8 C 0.124 3.876 9 H 0.085 0.915 10 C -0.048 4.048 11 S -0.273 6.273 12 C 0.179 3.821 13 N -0.631 5.631 14 C 0.564 3.436 15 O -0.611 6.611 16 C -0.566 4.566 17 H 0.089 0.911 18 C 0.031 3.969 19 N -0.820 5.820 20 Si 0.996 3.004 21 H -0.255 1.255 22 H -0.250 1.250 23 H -0.274 1.274 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.032 0.968 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.020 0.980 34 H 0.164 0.836 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 3.452 -11.447 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 N -0.347 5.347 4 C -0.027 4.027 5 C -0.229 4.229 6 C 0.292 3.708 7 O -0.447 6.447 8 C 0.014 3.986 9 H 0.102 0.898 10 C -0.197 4.197 11 S -0.047 6.047 12 C -0.055 4.055 13 N -0.370 5.370 14 C 0.370 3.630 15 O -0.496 6.496 16 C -0.603 4.603 17 H 0.107 0.893 18 C -0.184 4.184 19 N -0.449 5.449 20 Si 0.815 3.185 21 H -0.179 1.179 22 H -0.173 1.173 23 H -0.199 1.199 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.117 0.883 28 H 0.058 0.942 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.039 0.961 34 H 0.182 0.818 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.205 3.749 -11.418 17.128 hybrid contribution 0.971 -1.494 1.127 2.108 sum -11.234 2.255 -10.290 15.401 Atomic orbital electron populations 1.22017 0.93697 1.03118 1.02103 1.21464 0.95804 0.82110 1.02328 1.48111 1.65445 1.14641 1.06466 1.22069 0.98878 0.97710 0.84089 1.22199 0.96737 1.02537 1.01439 1.21360 0.75825 0.89909 0.83729 1.90663 1.53277 1.66595 1.34143 1.21062 0.97072 0.91777 0.88717 0.89767 1.24623 0.98265 0.92511 1.04254 1.87856 1.80541 1.15731 1.20541 1.24049 0.98015 0.89343 0.94122 1.48368 1.33149 1.39178 1.16308 1.18364 0.77166 0.80255 0.87251 1.90548 1.60127 1.34557 1.64349 1.21382 1.11154 1.27508 1.00226 0.89319 1.26960 0.95137 0.92356 1.03987 1.70154 1.12530 1.23572 1.38628 0.85034 0.79310 0.78678 0.75495 1.17926 1.17321 1.19935 0.89861 0.90157 0.94850 0.88322 0.94159 0.86216 0.88918 0.92494 0.88310 0.96072 0.81814 0.87231 0.90111 0.87019 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 10.24 71.98 0.74 -2.39 16 2 C 0.11 2.90 6.22 86.38 0.54 3.44 16 3 N -0.61 -18.69 2.47 -821.85 -2.03 -20.72 16 4 C 0.09 1.85 5.76 86.38 0.50 2.35 16 5 C -0.17 -3.77 10.23 71.98 0.74 -3.03 16 6 C 0.51 21.27 5.96 87.66 0.52 21.79 16 7 O -0.57 -30.84 14.78 8.54 0.13 -30.72 16 8 C 0.12 4.81 2.09 44.96 0.09 4.91 16 9 H 0.08 3.39 7.29 -2.39 -0.02 3.37 16 10 C -0.05 -1.26 6.02 72.51 0.44 -0.82 16 11 S -0.27 -8.21 23.44 -56.49 -1.32 -9.54 16 12 C 0.18 6.95 7.01 127.56 0.89 7.84 16 13 N -0.63 -30.26 2.69 -812.10 -2.19 -32.45 16 14 C 0.56 34.13 6.75 86.36 0.58 34.71 16 15 O -0.61 -42.12 14.10 7.28 0.10 -42.01 16 16 C -0.57 -33.27 8.82 24.83 0.22 -33.05 16 17 H 0.09 4.67 6.45 -2.91 -0.02 4.65 16 18 C 0.03 1.78 5.49 85.31 0.47 2.25 16 19 N -0.82 -51.56 11.88 21.83 0.26 -51.30 16 20 Si 1.00 42.36 29.56 68.60 2.03 44.39 16 21 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 22 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 28 H 0.04 1.47 7.25 -2.39 -0.02 1.46 16 29 H 0.12 1.39 8.11 -2.39 -0.02 1.37 16 30 H 0.09 1.59 4.02 -2.39 -0.01 1.58 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.02 0.64 7.85 -2.39 -0.02 0.62 16 34 H 0.16 2.78 6.44 -2.39 -0.02 2.76 16 35 H 0.11 2.65 7.84 -2.39 -0.02 2.63 16 36 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.11 4.34 6.92 -2.39 -0.02 4.33 16 38 H 0.27 15.66 8.29 -92.70 -0.77 14.90 16 Total: -1.00 -88.55 322.25 3.76 -84.78 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.06 Total: 19.56 kcal Atomic # 6 Polarization: 32.27 SS G_CDS: 5.73 Total: 38.00 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -3.96 Total: -104.47 kcal Atomic # 8 Polarization: -72.96 SS G_CDS: 0.23 Total: -72.73 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.32 Total: -9.54 kcal Total: -88.55 3.76 -84.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880549.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.638 kcal (2) G-P(sol) polarization free energy of solvation -88.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds